Package evaluation of OrthogonalSphericalShellGrids on Julia 1.13.0-DEV.1155 (b3f8bb4e33*) started at 2025-09-17T22:52:41.199 ################################################################################ # Set-up # Set-up completed after 0.2s ################################################################################ # Installation # Installing OrthogonalSphericalShellGrids... Resolving package versions... Installed Oceananigans ─ v0.99.1 Updating `~/.julia/environments/v1.13/Project.toml` [c2be9673] + OrthogonalSphericalShellGrids v0.2.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [fa961155] + CEnum v0.5.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [21656369] + ExpressionExplorer v1.1.3 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.0 [0c68f7d7] + GPUArrays v11.2.5 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌃ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [63c18a36] + KernelAbstractions v0.9.38 [ba0b0d4f] + Krylov v0.10.1 [45d422c2] + KrylovPreconditioners v0.3.6 [929cbde3] + LLVM v9.4.2 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [2679e427] + Metis v1.5.0 [46d2c3a1] + MuladdMacro v0.2.4 [9e8cae18] + Oceananigans v0.99.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [c2be9673] + OrthogonalSphericalShellGrids v0.2.2 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [94ee1d12] + Quaternions v0.7.6 [a3311ec8] + ReactantCore v0.1.15 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.5.0 [d496a93d] + SeawaterPolynomials v0.3.10 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.19.1 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [dad2f222] + LLVMExtra_jll v0.0.37+2 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1549.6 ms ✓ SeawaterPolynomials 1186.8 ms ✓ ReactantCore 5470.9 ms ✓ TaylorSeries 1873.3 ms ✓ Metis 56359.5 ms ✓ GPUArrays → JLD2Ext 2608.9 ms ✓ CubedSphere 7702.5 ms ✓ TaylorSeries → TaylorSeriesJLD2Ext 3870.1 ms ✓ TaylorSeries → TaylorSeriesSAExt 11247.8 ms ✓ Metis → MetisGraphs 53460.9 ms ✓ KrylovPreconditioners 158602.7 ms ✓ Oceananigans ✗ OrthogonalSphericalShellGrids 11 dependencies successfully precompiled in 324 seconds. 117 already precompiled. 1 dependency had output during precompilation: ┌ Oceananigans │ WARNING: Constructor for type "FieldBoundaryConditions" was extended in `MultiRegion` without explicit qualification or import. │ NOTE: Assumed "FieldBoundaryConditions" refers to `BoundaryConditions.FieldBoundaryConditions`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function FieldBoundaryConditions end`. │ Hint: To silence the warning, qualify `FieldBoundaryConditions` as `BoundaryConditions.FieldBoundaryConditions` in the method signature or explicitly `import BoundaryConditions: FieldBoundaryConditions`. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: OrthogonalSphericalShellGrids Failed to precompile OrthogonalSphericalShellGrids [c2be9673-fb75-4747-82dc-aa2bb9f4aed0] to "/home/pkgeval/.julia/compiled/v1.13/OrthogonalSphericalShellGrids/jl_ujBVpm" (ProcessExited(1)). ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/EilrD/src/Oceananigans.jl:125 WARNING: Imported binding BoundaryConditions.apply_y_north_bc! was undeclared at import time during import to OrthogonalSphericalShellGrids. ERROR: LoadError: invalid method definition in OrthogonalSphericalShellGrids: exported function BoundaryConditions.apply_y_north_bc! does not exist Stacktrace: [1] top-level scope @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:49 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [9] include_string @ ./loading.jl:2925 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 330.71s ################################################################################ # Loading # Loading OrthogonalSphericalShellGrids... Precompiling packages... 7686.0 ms ✓ Metis → MetisGraphs 59192.4 ms ✓ GPUArrays → JLD2Ext 35882.0 ms ✓ KrylovPreconditioners Info Given OrthogonalSphericalShellGrids was explicitly requested, output will be shown live  WARNING: Constructor for type "FieldBoundaryConditions" was extended in `MultiRegion` without explicit qualification or import.  NOTE: Assumed "FieldBoundaryConditions" refers to `BoundaryConditions.FieldBoundaryConditions`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function FieldBoundaryConditions end`.  Hint: To silence the warning, qualify `FieldBoundaryConditions` as `BoundaryConditions.FieldBoundaryConditions` in the method signature or explicitly `import BoundaryConditions: FieldBoundaryConditions`. ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/EilrD/src/Oceananigans.jl:125 WARNING: Imported binding BoundaryConditions.apply_y_north_bc! was undeclared at import time during import to OrthogonalSphericalShellGrids. ERROR: LoadError: invalid method definition in OrthogonalSphericalShellGrids: exported function BoundaryConditions.apply_y_north_bc! does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:309  [3] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:49  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:308  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3069  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2915  [9] include_string  @ ./loading.jl:2925 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [11] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:1 in expression starting at stdin:5 ✗ OrthogonalSphericalShellGrids 3 dependencies successfully precompiled in 231 seconds. 125 already precompiled. ERROR: The following 1 direct dependency failed to precompile: OrthogonalSphericalShellGrids Failed to precompile OrthogonalSphericalShellGrids [c2be9673-fb75-4747-82dc-aa2bb9f4aed0] to "/home/pkgeval/.julia/compiled/v1.13/OrthogonalSphericalShellGrids/jl_brd0oX" (ProcessExited(1)). WARNING: Constructor for type "FieldBoundaryConditions" was extended in `MultiRegion` without explicit qualification or import. NOTE: Assumed "FieldBoundaryConditions" refers to `BoundaryConditions.FieldBoundaryConditions`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function FieldBoundaryConditions end`. Hint: To silence the warning, qualify `FieldBoundaryConditions` as `BoundaryConditions.FieldBoundaryConditions` in the method signature or explicitly `import BoundaryConditions: FieldBoundaryConditions`. ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/EilrD/src/Oceananigans.jl:125 WARNING: Imported binding BoundaryConditions.apply_y_north_bc! was undeclared at import time during import to OrthogonalSphericalShellGrids. ERROR: LoadError: invalid method definition in OrthogonalSphericalShellGrids: exported function BoundaryConditions.apply_y_north_bc! does not exist Stacktrace: [1] top-level scope @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:49 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [9] include_string @ ./loading.jl:2925 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:1 in expression starting at stdin: Loading failed after 232.71s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using OrthogonalSphericalShellGrids'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:308 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 606.76s: package fails to precompile