Package evaluation of Circuitscape on Julia 1.13.0-DEV.1155 (b3f8bb4e33*) started at 2025-09-18T00:15:07.635 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.63s ################################################################################ # Installation # Installing Circuitscape... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed Extents ───────────────────── v0.1.6 Installed MosaicViews ───────────────── v0.3.4 Installed OrderedCollections ────────── v1.8.1 Installed PreallocationTools ────────── v0.4.34 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Tables ────────────────────── v1.12.1 Installed SimpleWeightedGraphs ──────── v1.5.0 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed EnumX ─────────────────────── v1.0.5 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Jieko ─────────────────────── v0.2.1 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed LERC_jll ──────────────────── v4.0.1+0 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.5.0 Installed IterativeSolvers ──────────── v0.9.4 Installed LinearSolve ───────────────── v3.40.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed boost_jll ─────────────────── v1.87.0+0 Installed HDF4_jll ──────────────────── v4.3.2+0 Installed MappedArrays ──────────────── v0.4.2 Installed UnPack ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed ADTypes ───────────────────── v1.18.0 Installed RecursiveArrayTools ───────── v3.37.1 Installed DataStructures ────────────── v0.19.1 Installed MacroTools ────────────────── v0.5.16 Installed Arrow_jll ─────────────────── v19.0.1+0 Installed libaec_jll ────────────────── v1.1.4+0 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed DiskArrays ────────────────── v0.4.16 Installed ExprTools ─────────────────── v0.1.10 Installed FillArrays ────────────────── v1.14.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Expat_jll ─────────────────── v2.7.1+0 Installed GPUArraysCore ─────────────── v0.2.0 Installed CEnum ─────────────────────── v0.5.0 Installed libpng_jll ────────────────── v1.6.50+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed ArrayInterface ────────────── v7.20.0 Installed ConcreteStructs ───────────── v0.2.3 Installed Qhull_jll ─────────────────── v10008.0.1004+0 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed OpenMPI_jll ───────────────── v5.0.8+0 Installed SimpleTraits ──────────────── v0.9.5 Installed ArrayLayouts ──────────────── v1.11.2 Installed libzip_jll ────────────────── v1.11.3+0 Installed ColorVectorSpace ──────────── v0.11.0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed Setfield ──────────────────── v1.1.2 Installed LRUCache ──────────────────── v1.6.2 Installed GZip ──────────────────────── v0.6.2 Installed DocStringExtensions ───────── v0.9.5 Installed snappy_jll ────────────────── v1.2.3+0 Installed CompositionsBase ──────────── v0.1.2 Installed ImageCore ─────────────────── v0.10.5 Installed CommonSolve ───────────────── v0.2.4 Installed Moshi ─────────────────────── v0.3.7 Installed OpenJpeg_jll ──────────────── v2.5.4+0 Installed Circuitscape ──────────────── v5.15.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed StackViews ────────────────── v0.1.2 Installed MPICH_jll ─────────────────── v4.3.1+0 Installed RecipesBase ───────────────── v1.3.4 Installed FunctionWrappersWrappers ──── v0.1.3 Installed DataAPI ───────────────────── v1.16.0 Installed SciMLOperators ────────────── v1.7.2 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed SciMLStructures ───────────── v1.7.0 Installed StaticArraysCore ──────────── v1.4.3 Installed StaticArrays ──────────────── v1.9.15 Installed Colors ────────────────────── v0.13.1 Installed Krylov ────────────────────── v0.10.1 Installed ColorTypes ────────────────── v0.12.1 Installed FunctionWrappers ──────────── v1.1.3 Installed ICU_jll ───────────────────── v76.2.0+0 Installed GeoFormatTypes ────────────── v0.4.4 Installed Requires ──────────────────── v1.3.1 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed ArchGDAL ──────────────────── v0.10.10 Installed SciMLBase ─────────────────── v2.120.0 Installed JLLWrappers ───────────────── v1.7.1 Installed Thrift_jll ────────────────── v0.21.1+0 Installed XZ_jll ────────────────────── v5.8.1+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed muparser_jll ──────────────── v2.3.5+0 Installed NetCDF_jll ────────────────── v401.900.300+0 Installed AlgebraicMultigrid ────────── v1.1.0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed Accessors ─────────────────── v0.1.42 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.3.0 Installed Kerberos_krb5_jll ─────────── v1.21.3+0 Installed libgeotiff_jll ────────────── v100.702.400+0 Installed RuntimeGeneratedFunctions ─── v0.5.15 Installed ConstructionBase ──────────── v1.6.0 Installed Graphs ────────────────────── v1.13.1 Installed Compat ────────────────────── v4.18.0 Installed SymbolicIndexingInterface ─── v0.3.44 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed TensorCore ────────────────── v0.1.1 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed Statistics ────────────────── v1.11.1 Installed OffsetArrays ──────────────── v1.17.0 Installed LazyArrays ────────────────── v2.6.2 Installed ExproniconLite ────────────── v0.10.14 Installed PrecompileTools ───────────── v1.3.3 Installed ChainRulesCore ────────────── v1.26.0 Installed LibPQ_jll ─────────────────── v16.8.0+0 Installed PROJ_jll ──────────────────── v902.600.200+0 Installed MPIPreferences ────────────── v0.1.11 Installed LittleCMS_jll ─────────────── v2.17.0+0 Installed XML2_jll ──────────────────── v2.13.8+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed GDAL ──────────────────────── v1.11.0 Installed GDAL_jll ──────────────────── v303.1100.400+0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed SQLite_jll ────────────────── v3.48.0+0 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed GEOS_jll ──────────────────── v3.14.0+0 Installed brotli_jll ────────────────── v1.1.1+0 Installed GeoInterface ──────────────── v1.6.0 Installing 47 artifacts Installed artifact libaec 49.6 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Expat 274.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact LERC 272.9 KiB Installed artifact Qhull 2.5 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Thrift 2.0 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact OpenJpeg 421.4 KiB Installed artifact libgeotiff 151.8 KiB Installed artifact PROJ 3.9 MiB Installed artifact oneTBB 435.6 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact snappy 43.9 KiB Installed artifact LittleCMS 752.2 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact libpng 328.4 KiB Installed artifact ICU 15.6 MiB Installed artifact Libtiff 3.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Giflib 154.6 KiB Installed artifact HDF5 5.7 MiB Installed artifact MPICH 3.3 MiB Installed artifact brotli 406.5 KiB Installed artifact SQLite 5.0 MiB Installed artifact libzip 177.6 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Bzip2 503.5 KiB Installed artifact HDF4 1009.8 KiB Installed artifact muparser 205.5 KiB Installed artifact libwebp 2.6 MiB Installed artifact XZ 1.5 MiB Installed artifact XML2 2.5 MiB Installed artifact GDAL 17.1 MiB Installed artifact Blosc 44.2 KiB Installed artifact Hwloc 3.5 MiB Installed artifact NetCDF 936.0 KiB Installed artifact Arrow 10.3 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Kerberos_krb5 4.5 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact GEOS 2.4 MiB Installed artifact Lz4 239.7 KiB Installed artifact boost 24.9 MiB Installed artifact LibPQ 33.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [2b7a1792] + Circuitscape v5.15.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [2169fc97] + AlgebraicMultigrid v1.1.0 [c9ce4bd3] + ArchGDAL v0.10.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [2b7a1792] + Circuitscape v5.15.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [3c3547ce] + DiskArrays v0.4.16 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [add2ef01] + GDAL v1.11.0 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.6.0 [86223c79] + Graphs v1.13.1 [a09fc81d] + ImageCore v0.10.5 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.1 [8ac3fa9e] + LRUCache v1.6.2 [5078a376] + LazyArrays v2.6.2 [7ed4a6bd] + LinearSolve v3.40.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [e94cdb99] + MosaicViews v0.3.4 [2e0e35c7] + Moshi v0.3.7 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [5432bcbf] + PaddedViews v0.5.12 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] + SciMLBase v2.120.0 [c0aeaf25] + SciMLOperators v1.7.2 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [2efcf032] + SymbolicIndexingInterface v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3a884ed6] + UnPack v1.0.2 [8ce61222] + Arrow_jll v19.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [2e619515] + Expat_jll v2.7.1+0 [a7073274] + GDAL_jll v303.1100.400+0 [d604d12d] + GEOS_jll v3.14.0+0 [59f7168a] + Giflib_jll v5.2.3+0 [818ab7a1] + HDF4_jll v4.3.2+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [a51ab1cf] + ICU_jll v76.2.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [08be9ffa] + LibPQ_jll v16.8.0+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [d3a379c0] + LittleCMS_jll v2.17.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [643b3616] + OpenJpeg_jll v2.5.4+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [58948b4f] + PROJ_jll v902.600.200+0 [784f63db] + Qhull_jll v10008.0.1004+0 [76ed43ae] + SQLite_jll v3.48.0+0 [e0b8ae26] + Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [28df3c45] + boost_jll v1.87.0+0 [4611771a] + brotli_jll v1.1.1+0 [477f73a3] + libaec_jll v1.1.4+0 [06c338fa] + libgeotiff_jll v100.702.400+0 [b53b4c65] + libpng_jll v1.6.50+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [888e69b1] + muparser_jll v2.3.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [fe1e1685] + snappy_jll v1.2.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 39.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5175.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: AlgebraicMultigrid Failed to precompile AlgebraicMultigrid [2169fc97-5a83-5252-b627-83903c6c433c] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicMultigrid/jl_OAWuGz" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `MKL_jll` not defined in `LinearSolve` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/tOoFP/src/mkl.jl:18 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/LinearSolve/tOoFP/src/LinearSolve.jl:369 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [9] include_string @ ./loading.jl:2925 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/tOoFP/src/mkl.jl:18 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/tOoFP/src/LinearSolve.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] to "/home/pkgeval/.julia/compiled/v1.13/LinearSolve/jl_jZiEaE" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/AlgebraicMultigrid/5k9uh/src/AlgebraicMultigrid.jl:5 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/AlgebraicMultigrid/5k9uh/src/AlgebraicMultigrid.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 582.41s ################################################################################ # Testing # Testing Circuitscape Status `/tmp/jl_FWr4Gl/Project.toml` [2169fc97] AlgebraicMultigrid v1.1.0 [c9ce4bd3] ArchGDAL v0.10.10 [2b7a1792] Circuitscape v5.15.0 [8bb1440f] DelimitedFiles v1.9.1 [92fee26a] GZip v0.6.2 [86223c79] Graphs v1.13.1 [42fd0dbc] IterativeSolvers v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [3fa0cd96] REPL v1.11.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [4607b0f0] SuiteSparse [8dfed614] Test v1.11.0 Status `/tmp/jl_FWr4Gl/Manifest.toml` [47edcb42] ADTypes v1.18.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [2169fc97] AlgebraicMultigrid v1.1.0 [c9ce4bd3] ArchGDAL v0.10.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [fa961155] CEnum v0.5.0 [d360d2e6] ChainRulesCore v1.26.0 [2b7a1792] Circuitscape v5.15.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [3c3547ce] DiskArrays v0.4.16 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [add2ef01] GDAL v1.11.0 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.6.0 [86223c79] Graphs v1.13.1 [a09fc81d] ImageCore v0.10.5 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [ba0b0d4f] Krylov v0.10.1 [8ac3fa9e] LRUCache v1.6.2 [5078a376] LazyArrays v2.6.2 [7ed4a6bd] LinearSolve v3.40.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [e94cdb99] MosaicViews v0.3.4 [2e0e35c7] Moshi v0.3.7 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.37.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [0bca4576] SciMLBase v2.120.0 [c0aeaf25] SciMLOperators v1.7.2 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [47aef6b3] SimpleWeightedGraphs v1.5.0 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [2efcf032] SymbolicIndexingInterface v0.3.44 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3a884ed6] UnPack v1.0.2 [8ce61222] Arrow_jll v19.0.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] Expat_jll v2.7.1+0 [a7073274] GDAL_jll v303.1100.400+0 [d604d12d] GEOS_jll v3.14.0+0 [59f7168a] Giflib_jll v5.2.3+0 [818ab7a1] HDF4_jll v4.3.2+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [a51ab1cf] ICU_jll v76.2.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [b39eb1a6] Kerberos_krb5_jll v1.21.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [08be9ffa] LibPQ_jll v16.8.0+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [89763e89] Libtiff_jll v4.7.1+0 [d3a379c0] LittleCMS_jll v2.17.0+0 [5ced341a] Lz4_jll v1.10.1+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [643b3616] OpenJpeg_jll v2.5.4+0 [fe0851c0] OpenMPI_jll v5.0.8+0 [58948b4f] PROJ_jll v902.600.200+0 [784f63db] Qhull_jll v10008.0.1004+0 [76ed43ae] SQLite_jll v3.48.0+0 [e0b8ae26] Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [28df3c45] boost_jll v1.87.0+0 [4611771a] brotli_jll v1.1.1+0 [477f73a3] libaec_jll v1.1.4+0 [06c338fa] libgeotiff_jll v100.702.400+0 [b53b4c65] libpng_jll v1.6.50+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [888e69b1] muparser_jll v2.3.5+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [fe1e1685] snappy_jll v1.2.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ LinearSolve ✗ LinearSolve → LinearSolveSparseArraysExt ✗ LinearSolve → LinearSolveIterativeSolversExt ✗ AlgebraicMultigrid 0 dependencies successfully precompiled in 61 seconds. 205 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: AlgebraicMultigrid Failed to precompile AlgebraicMultigrid [2169fc97-5a83-5252-b627-83903c6c433c] to "/home/pkgeval/.julia/compiled/v1.13/AlgebraicMultigrid/jl_fWQbEm" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `MKL_jll` not defined in `LinearSolve` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/LinearSolve/tOoFP/src/mkl.jl:18 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/LinearSolve/tOoFP/src/LinearSolve.jl:369 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [9] include_string @ ./loading.jl:2925 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/tOoFP/src/mkl.jl:18 in expression starting at /home/pkgeval/.julia/packages/LinearSolve/tOoFP/src/LinearSolve.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] to "/home/pkgeval/.julia/compiled/v1.13/LinearSolve/jl_PZirqH" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/AlgebraicMultigrid/5k9uh/src/AlgebraicMultigrid.jl:5 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/AlgebraicMultigrid/5k9uh/src/AlgebraicMultigrid.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/Circuitscape/8vKOI/test/runtests.jl:1 Testing failed after 77.88s ERROR: LoadError: Package Circuitscape errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 735.84s: package fails to precompile