Package evaluation of PhyloClustering on Julia 1.13.0-DEV.464 (abc56fde89*) started at 2025-05-02T04:51:48.862


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# Set-up
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Set-up completed after 0.23s


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# Installation
#

Installing PhyloClustering...
   Resolving package versions...
   Installed x265_jll ──────────────────── v4.1.0+0
   Installed JpegTurbo_jll ─────────────── v3.1.1+0
   Installed ScikitLearnBase ───────────── v0.5.0
   Installed ImageIO ───────────────────── v0.6.9
   Installed BioGenerics ───────────────── v0.1.5
   Installed AxisArrays ────────────────── v0.4.7
   Installed PhyloClustering ───────────── v0.2.0
   Installed TiffImages ────────────────── v0.11.3
   Installed libfdk_aac_jll ────────────── v2.0.3+0
   Installed Libmount_jll ──────────────── v2.41.0+0
   Installed HypergeometricFunctions ───── v0.3.28
   Installed OffsetArrays ──────────────── v1.17.0
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed PNGFiles ──────────────────── v0.4.4
   Installed JpegTurbo ─────────────────── v0.1.6
   Installed StatsFuns ─────────────────── v1.5.0
   Installed Opus_jll ──────────────────── v1.3.3+0
   Installed StatisticalTraits ─────────── v3.4.0
   Installed Preferences ───────────────── v1.4.3
   Installed FFTW ──────────────────────── v1.8.1
   Installed ParallelKMeans ────────────── v1.1.0
   Installed Permutations ──────────────── v0.4.23
   Installed Multisets ─────────────────── v0.4.5
   Installed Sixel ─────────────────────── v0.1.3
   Installed PDMats ────────────────────── v0.11.34
   Installed InlineStrings ─────────────── v1.4.3
   Installed RelocatableFolders ────────── v1.0.1
   Installed StableHashTraits ──────────── v1.3.4
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed Grisu ─────────────────────── v1.0.2
   Installed ProgressMeter ─────────────── v1.10.4
   Installed Contour ───────────────────── v0.6.3
   Installed OpenEXR ───────────────────── v0.3.3
   Installed NearestNeighbors ──────────── v0.4.21
   Installed StaticArrays ──────────────── v1.9.13
   Installed PlotUtils ─────────────────── v1.4.3
   Installed EnumX ─────────────────────── v1.0.5
   Installed Formatting ────────────────── v0.4.3
   Installed CEnum ─────────────────────── v0.5.0
   Installed DelimitedFiles ────────────── v1.9.1
   Installed FileIO ────────────────────── v1.17.0
   Installed Cairo_jll ─────────────────── v1.18.4+0
   Installed InvertedIndices ───────────── v1.3.1
   Installed Fontconfig_jll ────────────── v2.16.0+0
   Installed Statistics ────────────────── v1.11.1
   Installed Polynomials ───────────────── v4.0.19
   Installed DataFrames ────────────────── v1.7.0
   Installed IntelOpenMP_jll ───────────── v2025.0.4+0
   Installed GLM ───────────────────────── v1.9.0
   Installed Netpbm ────────────────────── v1.1.1
   Installed BioSequences ──────────────── v3.4.1
   Installed Mods ──────────────────────── v2.2.6
   Installed SignedDistanceFields ──────── v0.4.0
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed FilePaths ─────────────────── v0.8.3
   Installed Distances ─────────────────── v0.10.12
   Installed Missings ──────────────────── v1.2.0
   Installed RoundingEmulator ──────────── v0.2.1
   Installed TupleTools ────────────────── v1.6.0
   Installed ColorSchemes ──────────────── v3.29.0
   Installed TriplotBase ───────────────── v0.1.0
   Installed Showoff ───────────────────── v1.0.3
   Installed IrrationalConstants ───────── v0.2.4
   Installed SIMD ──────────────────────── v3.7.1
   Installed FiniteDiff ────────────────── v2.27.0
   Installed JLD2 ──────────────────────── v0.4.54
   Installed Functors ──────────────────── v0.4.12
   Installed AbstractLattices ──────────── v0.3.1
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed Pango_jll ─────────────────── v1.56.1+0
   Installed JSON ──────────────────────── v0.21.4
   Installed SimpleRandom ──────────────── v0.3.2
   Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0
   Installed PolygonOps ────────────────── v0.1.2
   Installed NLopt ─────────────────────── v1.1.3
   Installed PtrArrays ─────────────────── v1.3.0
   Installed ADTypes ───────────────────── v1.14.0
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed SentinelArrays ────────────── v1.4.8
   Installed QOI ───────────────────────── v1.0.1
   Installed XZ_jll ────────────────────── v5.8.1+0
   Installed SpecialFunctions ──────────── v2.5.1
   Installed Clustering ────────────────── v0.15.8
   Installed isoband_jll ───────────────── v0.2.3+0
   Installed HarfBuzz_jll ──────────────── v8.5.0+0
   Installed PkgVersion ────────────────── v0.3.3
   Installed StaticArraysCore ──────────── v1.4.3
   Installed PikaParser ────────────────── v0.6.1
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed NaNMath ───────────────────── v1.1.3
   Installed MathTeXEngine ─────────────── v0.5.7
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed StringViews ───────────────── v1.3.4
   Installed WebP ──────────────────────── v0.1.3
   Installed NLSolversBase ─────────────── v7.9.1
   Installed TranscodingStreams ────────── v0.11.3
   Installed WorkerUtilities ───────────── v1.6.1
   Installed UnicodeFun ────────────────── v0.4.1
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed Graphics ──────────────────── v1.1.3
   Installed ImageMetadata ─────────────── v0.9.10
   Installed UnsafeArrays ──────────────── v1.0.7
   Installed SimpleGraphs ──────────────── v0.8.6
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed Ratios ────────────────────── v0.4.5
   Installed BioSymbols ────────────────── v5.2.0
   Installed StatsModels ───────────────── v0.7.4
   Installed Colors ────────────────────── v0.12.11
   Installed DataStructures ────────────── v0.18.22
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed PaddedViews ───────────────── v0.5.12
   Installed MappedArrays ──────────────── v0.4.2
   Installed CommonSubexpressions ──────── v0.3.1
   Installed WeakRefStrings ────────────── v1.4.2
   Installed FreeType ──────────────────── v4.1.1
   Installed StatsAPI ──────────────────── v1.7.0
   Installed Compat ────────────────────── v4.16.0
   Installed CodecZlib ─────────────────── v0.7.8
   Installed GridLayoutBase ────────────── v0.10.2
   Installed LazyModules ───────────────── v0.3.1
   Installed LinearAlgebraX ────────────── v0.2.10
   Installed Automa ────────────────────── v1.1.0
   Installed MosaicViews ───────────────── v0.3.4
   Installed StatsBase ─────────────────── v0.33.21
   Installed libaom_jll ────────────────── v3.11.0+0
   Installed libpng_jll ────────────────── v1.6.47+0
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed StructTypes ───────────────── v1.11.0
   Installed Scratch ───────────────────── v1.2.1
   Installed ImageCore ─────────────────── v0.10.5
   Installed oneTBB_jll ────────────────── v2022.0.0+0
   Installed DiffRules ─────────────────── v1.15.1
   Installed ColorTypes ────────────────── v0.11.5
   Installed SimplePartitions ──────────── v0.3.3
   Installed Twiddle ───────────────────── v1.1.2
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed Zstd_jll ──────────────────── v1.5.7+1
   Installed TensorCore ────────────────── v0.1.1
   Installed FreeTypeAbstraction ───────── v0.10.6
   Installed TableTraits ───────────────── v1.0.1
   Installed Expat_jll ─────────────────── v2.6.5+0
   Installed Isoband ───────────────────── v0.1.1
   Installed DiffResults ───────────────── v1.1.0
   Installed WeakKeyIdDicts ────────────── v0.1.0
   Installed PositiveFactorizations ────── v0.2.4
   Installed Inflate ───────────────────── v0.1.5
   Installed PrettyTables ──────────────── v2.4.0
   Installed Imath_jll ─────────────────── v3.1.11+0
   Installed PooledArrays ──────────────── v1.4.3
   Installed Extents ───────────────────── v0.1.5
   Installed Setfield ──────────────────── v1.1.2
   Installed Parsers ───────────────────── v2.8.3
   Installed MKL_jll ───────────────────── v2025.0.1+1
   Installed Libtiff_jll ───────────────── v4.7.1+0
   Installed Format ────────────────────── v1.3.7
   Installed Packing ───────────────────── v0.5.1
   Installed JLLWrappers ───────────────── v1.7.0
   Installed AbstractFFTs ──────────────── v1.5.0
   Installed ConstructionBase ──────────── v1.5.8
   Installed DataValueInterfaces ───────── v1.0.0
   Installed Libffi_jll ────────────────── v3.2.2+2
   Installed ColorVectorSpace ──────────── v0.10.0
   Installed OrderedCollections ────────── v1.8.0
   Installed AbstractTrees ─────────────── v0.4.5
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed ExactPredicates ───────────── v2.2.8
   Installed Ogg_jll ───────────────────── v1.3.5+1
   Installed KernelDensity ─────────────── v0.6.9
   Installed ChainRulesCore ────────────── v1.25.1
   Installed Combinatorics ─────────────── v1.0.2
   Installed Interpolations ────────────── v0.15.1
   Installed ArrayInterface ────────────── v7.18.0
   Installed Reexport ──────────────────── v1.2.2
   Installed LineSearches ──────────────── v7.3.0
   Installed Animations ────────────────── v0.4.2
   Installed LogExpFunctions ───────────── v0.3.29
   Installed RingLists ─────────────────── v0.2.9
   Installed StackViews ────────────────── v0.1.1
   Installed AliasTables ───────────────── v1.1.3
   Installed RangeArrays ───────────────── v0.3.2
   Installed MacroTools ────────────────── v0.5.16
   Installed IntervalArithmetic ────────── v0.22.31
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed UnPack ────────────────────── v1.0.2
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed GeoFormatTypes ────────────── v0.4.4
   Installed Libuuid_jll ───────────────── v2.41.0+0
   Installed SimpleTraits ──────────────── v0.9.4
   Installed ColorBrewer ───────────────── v0.4.1
   Installed OpenEXR_jll ───────────────── v3.2.4+0
   Installed DocStringExtensions ───────── v0.9.4
   Installed MultivariateStats ─────────── v0.10.3
   Installed FASTX ─────────────────────── v2.1.7
   Installed DifferentiationInterface ──── v0.6.52
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed ScientificTypesBase ───────── v3.0.0
   Installed Crayons ───────────────────── v4.1.1
   Installed Adapt ─────────────────────── v4.3.0
   Installed StableRNGs ────────────────── v1.0.2
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed libass_jll ────────────────── v0.15.2+0
   Installed XML2_jll ──────────────────── v2.13.6+1
   Installed Rmath ─────────────────────── v0.8.0
   Installed IntegerMathUtils ──────────── v0.1.2
   Installed ImageBase ─────────────────── v0.1.7
   Installed IntervalSets ──────────────── v0.7.11
   Installed MLJModelInterface ─────────── v1.11.1
   Installed IterTools ─────────────────── v1.10.0
   Installed Gettext_jll ───────────────── v0.21.0+0
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed Cairo ─────────────────────── v1.1.1
   Installed Arpack_jll ────────────────── v3.5.1+1
   Installed FFMPEG_jll ────────────────── v7.1.0+0
   Installed IndirectArrays ────────────── v1.0.0
   Installed GeometryBasics ────────────── v0.4.11
   Installed MakieCore ─────────────────── v0.7.3
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed Tables ────────────────────── v1.12.0
   Installed DataAPI ───────────────────── v1.16.0
   Installed CairoMakie ────────────────── v0.11.9
   Installed ShaderAbstractions ────────── v0.4.1
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed Primes ────────────────────── v0.5.7
   Installed Optim ─────────────────────── v1.12.0
   Installed CSV ───────────────────────── v0.10.15
   Installed DelaunayTriangulation ─────── v0.8.12
   Installed RecipesBase ───────────────── v1.3.4
   Installed LAME_jll ──────────────────── v3.100.2+0
   Installed PrecompileTools ───────────── v1.3.2
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed StructArrays ──────────────── v0.6.21
   Installed libvorbis_jll ─────────────── v1.3.7+2
   Installed Glib_jll ──────────────────── v2.82.4+0
   Installed libsixel_jll ──────────────── v1.10.5+0
   Installed Libglvnd_jll ──────────────── v1.7.1+1
   Installed Arpack ────────────────────── v0.5.4
   Installed FilePathsBase ─────────────── v0.9.24
   Installed AxisAlgorithms ────────────── v1.1.0
   Installed FillArrays ────────────────── v1.13.0
   Installed ForwardDiff ───────────────── v1.0.1
   Installed PhyloNetworks ─────────────── v0.16.4
   Installed CRlibm ────────────────────── v1.0.2
   Installed ImageAxes ─────────────────── v0.6.12
   Installed QuadGK ────────────────────── v2.11.2
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed Requires ──────────────────── v1.3.1
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed Observables ───────────────── v0.5.5
   Installed Parameters ────────────────── v0.12.3
   Installed LightXML ──────────────────── v0.9.1
   Installed GeoInterface ──────────────── v1.4.1
   Installed CRlibm_jll ────────────────── v1.0.1+0
   Installed Distributions ─────────────── v0.25.119
   Installed SimplePolynomials ─────────── v0.2.18
   Installed GaussianMixtures ──────────── v0.3.12
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed libwebp_jll ───────────────── v1.5.0+0
   Installed StringManipulation ────────── v0.4.1
   Installed SortingAlgorithms ─────────── v1.2.1
   Installed Makie ─────────────────────── v0.20.8
  Installing 58 artifacts
   Installed artifact isoband                 25.7 KiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact Opus                    908.1 KiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact Zstd                    646.0 KiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact Expat                   271.4 KiB
   Installed artifact NLopt                   322.7 KiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact Fontconfig              522.5 KiB
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact Libmount                6.4 MiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact Arpack                  147.2 KiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact libaom                  6.4 MiB
   Installed artifact XML2                    2.5 MiB
   Installed artifact Ogg                     257.2 KiB
   Installed artifact FFMPEG                  11.4 MiB
   Installed artifact oneTBB                  435.6 KiB
   Installed artifact Imath                   182.8 KiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact x264                    2.1 MiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact Pango                   1.1 MiB
   Installed artifact libpng                  328.5 KiB
   Installed artifact OpenSpecFun             194.9 KiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact Glib                    7.6 MiB
   Installed artifact Bzip2                   503.5 KiB
   Installed artifact Libtiff                 3.2 MiB
   Installed artifact Libffi                  34.1 KiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact Libuuid                 3.5 MiB
   Installed artifact JpegTurbo               1.6 MiB
   Installed artifact x265                    1.4 MiB
   Installed artifact libass                  372.4 KiB
   Installed artifact OpenEXR                 1.9 MiB
   Installed artifact Xorg_libX11             13.9 MiB
   Installed artifact Gettext                 4.5 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [2e4ec7c6] + PhyloClustering v0.2.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.3.1
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.18.0
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
⌅ [13f3f980] + CairoMakie v0.11.9
  [d360d2e6] + ChainRulesCore v1.25.1
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [a2cac450] + ColorBrewer v0.4.1
  [35d6a980] + ColorSchemes v3.29.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌃ [c3611d14] + ColorVectorSpace v0.10.0
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.0.2
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [187b0558] + ConstructionBase v1.5.8
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.8.12
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.52
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.8
  [411431e0] + Extents v0.1.5
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.8.1
  [5789e2e9] + FileIO v1.17.0
⌅ [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.0.1
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.6
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [cc18c42c] + GaussianMixtures v0.3.12
  [68eda718] + GeoFormatTypes v0.4.4
  [cf35fbd7] + GeoInterface v1.4.1
⌅ [5c1252a2] + GeometryBasics v0.4.11
  [a2bd30eb] + Graphics v1.1.3
⌅ [3955a311] + GridLayoutBase v0.10.2
  [42e2da0e] + Grisu v1.0.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.3
  [18e54dd8] + IntegerMathUtils v0.1.2
  [a98d9a8b] + Interpolations v0.15.1
  [d1acc4aa] + IntervalArithmetic v0.22.31
  [8197267c] + IntervalSets v0.7.11
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.54
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.9
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.1
  [d3d80556] + LineSearches v7.3.0
  [9b3f67b0] + LinearAlgebraX v0.2.10
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.11.1
  [1914dd2f] + MacroTools v0.5.16
⌅ [ee78f7c6] + Makie v0.20.8
⌅ [20f20a25] + MakieCore v0.7.3
  [dbb5928d] + MappedArrays v0.4.2
⌅ [0a4f8689] + MathTeXEngine v0.5.7
  [e1d29d7a] + Missings v1.2.0
  [7475f97c] + Mods v2.2.6
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.5
  [6f286f6a] + MultivariateStats v0.10.3
  [d41bc354] + NLSolversBase v7.9.1
  [76087f3c] + NLopt v1.1.3
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [42b8e9d4] + ParallelKMeans v1.1.0
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [2e4ec7c6] + PhyloClustering v0.2.0
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.3
  [647866c9] + PolygonOps v0.1.2
  [f27b6e38] + Polynomials v4.0.19
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.1
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [286e9d63] + RingLists v0.2.9
  [79098fc4] + Rmath v0.8.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.1
  [30f210dd] + ScientificTypesBase v3.0.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
⌅ [65257c39] + ShaderAbstractions v0.4.1
  [1277b4bf] + ShiftedArrays v2.0.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.6
  [ec83eff0] + SimplePartitions v0.3.3
  [cc47b68c] + SimplePolynomials v0.2.18
  [a6525b86] + SimpleRandom v0.3.2
  [699a6c99] + SimpleTraits v0.9.4
  [45858cf5] + Sixel v0.1.3
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
⌅ [c5dd0088] + StableHashTraits v1.3.4
  [860ef19b] + StableRNGs v1.0.2
  [cae243ae] + StackViews v0.1.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
⌅ [09ab397b] + StructArrays v0.6.21
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.3
  [3bb67fe8] + TranscodingStreams v0.11.3
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.6.0
  [7200193e] + Twiddle v1.1.2
  [3a884ed6] + UnPack v1.0.2
  [1cfade01] + UnicodeFun v0.4.1
  [c4a57d5a] + UnsafeArrays v1.0.7
  [ecbed89c] + WeakKeyIdDicts v0.1.0
  [ea10d353] + WeakRefStrings v1.4.2
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.1+1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
⌃ [83423d85] + Cairo_jll v1.18.4+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.6.5+0
  [b22a6f82] + FFMPEG_jll v7.1.0+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.16.0+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [78b55507] + Gettext_jll v0.21.0+0
  [59f7168a] + Giflib_jll v5.2.3+0
⌃ [7746bdde] + Glib_jll v2.82.4+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.0+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [aacddb02] + JpegTurbo_jll v3.1.1+0
  [c1c5ebd0] + LAME_jll v3.100.2+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+2
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.0+0
  [89763e89] + Libtiff_jll v4.7.1+0
  [38a345b3] + Libuuid_jll v2.41.0+0
  [856f044c] + MKL_jll v2025.0.1+1
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.3.3+0
  [36c8627f] + Pango_jll v1.56.1+0
  [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.11.0+0
  [0ac62f75] + libass_jll v0.15.2+0
  [f638f0a6] + libfdk_aac_jll v2.0.3+0
  [b53b4c65] + libpng_jll v1.6.47+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.7+2
  [c5f90fcd] + libwebp_jll v1.5.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [8bf52ea8] + CRC32c v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [efcefdf7] + PCRE2_jll v10.44.0+1
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 44.38s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   2252.8 ms  ✓ Combinatorics
    801.0 ms  ✓ RangeArrays
   1039.9 ms  ✓ StringViews
    794.7 ms  ✓ ScientificTypesBase
   1140.7 ms  ✓ AbstractFFTs
    809.0 ms  ✓ LaTeXStrings
    993.7 ms  ✓ PositiveFactorizations
    780.8 ms  ✓ IndirectArrays
    764.9 ms  ✓ PolygonOps
    703.3 ms  ✓ IteratorInterfaceExtensions
    969.2 ms  ✓ TensorCore
    899.0 ms  ✓ GeoFormatTypes
   1035.2 ms  ✓ WorkerUtilities
    953.6 ms  ✓ StatsAPI
    708.3 ms  ✓ AbstractLattices
   1384.1 ms  ✓ ADTypes
    818.6 ms  ✓ Contour
   1105.3 ms  ✓ CEnum
   1631.0 ms  ✓ OffsetArrays
   1212.8 ms  ✓ UnsafeArrays
   1293.6 ms  ✓ TriplotBase
   2365.4 ms  ✓ Format
    824.8 ms  ✓ UnPack
   2064.2 ms  ✓ FillArrays
    829.8 ms  ✓ IntegerMathUtils
   1190.2 ms  ✓ Statistics
   1125.7 ms  ✓ IterTools
   4525.1 ms  ✓ MacroTools
   1346.6 ms  ✓ Grisu
    871.2 ms  ✓ ShiftedArrays
   1262.6 ms  ✓ OrderedCollections
   1063.3 ms  ✓ Observables
   1158.1 ms  ✓ Requires
    730.7 ms  ✓ DataValueInterfaces
    809.2 ms  ✓ EnumX
   1024.6 ms  ✓ StableRNGs
    749.9 ms  ✓ Reexport
   1123.6 ms  ✓ DocStringExtensions
   1692.9 ms  ✓ InlineStrings
   1180.5 ms  ✓ AbstractTrees
    772.6 ms  ✓ Twiddle
   2225.7 ms  ✓ IrrationalConstants
    998.1 ms  ✓ IntervalSets
    903.9 ms  ✓ RoundingEmulator
    940.1 ms  ✓ Extents
    755.1 ms  ✓ PtrArrays
   1195.1 ms  ✓ TranscodingStreams
   1059.8 ms  ✓ NaNMath
    909.1 ms  ✓ LazyModules
   1462.5 ms  ✓ Multisets
   1057.6 ms  ✓ DelimitedFiles
   1131.3 ms  ✓ RingLists
    833.8 ms  ✓ InvertedIndices
   1031.6 ms  ✓ Inflate
   1073.8 ms  ✓ ConstructionBase
   1106.7 ms  ✓ Mods
    803.0 ms  ✓ DataAPI
   1835.4 ms  ✓ Crayons
   1514.6 ms  ✓ Functors
    876.4 ms  ✓ StaticArraysCore
    940.0 ms  ✓ TupleTools
    893.6 ms  ✓ MappedArrays
    927.8 ms  ✓ WeakKeyIdDicts
   1281.1 ms  ✓ SuiteSparse
   2136.4 ms  ✓ ProgressMeter
   2564.7 ms  ✓ Formatting
   1426.5 ms  ✓ WoodburyMatrices
   3883.2 ms  ✓ SentinelArrays
   1664.3 ms  ✓ StructTypes
    996.6 ms  ✓ Scratch
   1209.3 ms  ✓ Preferences
   1228.2 ms  ✓ Compat
   3384.4 ms  ✓ UnicodeFun
   4968.9 ms  ✓ PkgVersion
   1206.0 ms  ✓ Permutations
    944.2 ms  ✓ StatisticalTraits
   3817.2 ms  ✓ AbstractFFTs → AbstractFFTsTestExt
    826.2 ms  ✓ TableTraits
   1928.3 ms  ✓ DifferentiationInterface
    971.8 ms  ✓ StackViews
   1015.2 ms  ✓ PaddedViews
   1495.4 ms  ✓ FillArrays → FillArraysSparseArraysExt
   1270.3 ms  ✓ Primes
   1194.2 ms  ✓ SignedDistanceFields
   3747.3 ms  ✓ FixedPointNumbers
   1415.7 ms  ✓ Distances
    946.4 ms  ✓ ScikitLearnBase
   1223.0 ms  ✓ Statistics → SparseArraysExt
    981.7 ms  ✓ FillArrays → FillArraysStatisticsExt
   1758.2 ms  ✓ CommonSubexpressions
   3411.0 ms  ✓ SimpleTraits
    963.3 ms  ✓ Showoff
   1048.6 ms  ✓ Parameters
   3224.6 ms  ✓ MakieCore
    785.0 ms  ✓ Ratios
    999.7 ms  ✓ Adapt
   9644.1 ms  ✓ FileIO
   1507.1 ms  ✓ PikaParser
   1422.2 ms  ✓ LogExpFunctions
    899.5 ms  ✓ IntervalSets → IntervalSetsRandomExt
    907.8 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
   1119.2 ms  ✓ AliasTables
   1003.1 ms  ✓ BioGenerics
   1043.0 ms  ✓ CodecZlib
    891.2 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
    891.7 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    886.7 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   1063.8 ms  ✓ PooledArrays
   1931.5 ms  ✓ GeoInterface
   1008.5 ms  ✓ Missings
    916.3 ms  ✓ DiffResults
   1790.4 ms  ✓ PDMats
   1340.3 ms  ✓ AxisAlgorithms
   1144.9 ms  ✓ RelocatableFolders
   1140.9 ms  ✓ JLLWrappers
    936.6 ms  ✓ PrecompileTools
    899.0 ms  ✓ Compat → CompatLinearAlgebraExt
   2996.8 ms  ✓ MLJModelInterface
   1634.8 ms  ✓ Tables
   1251.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
   1020.5 ms  ✓ MosaicViews
   4598.0 ms  ✓ ColorTypes
   1326.6 ms  ✓ Distances → DistancesSparseArraysExt
    977.3 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   1249.3 ms  ✓ Adapt → AdaptSparseArraysExt
   1232.0 ms  ✓ ArrayInterface
    984.6 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   1822.5 ms  ✓ AxisArrays
   3138.4 ms  ✓ Setfield
   1468.0 ms  ✓ FillArrays → FillArraysPDMatsExt
   1445.1 ms  ✓ OpenBLASConsistentFPCSR_jll
   1378.7 ms  ✓ Graphite2_jll
   1387.2 ms  ✓ Libmount_jll
   1393.9 ms  ✓ LLVMOpenMP_jll
   1388.6 ms  ✓ Bzip2_jll
   1408.6 ms  ✓ Rmath_jll
   1359.1 ms  ✓ Xorg_libXau_jll
   1407.6 ms  ✓ libpng_jll
   1359.9 ms  ✓ libfdk_aac_jll
   1367.0 ms  ✓ Imath_jll
   5451.3 ms  ✓ IntelOpenMP_jll
   1411.0 ms  ✓ Giflib_jll
   1517.3 ms  ✓ LAME_jll
   1545.4 ms  ✓ LERC_jll
   1370.2 ms  ✓ EarCut_jll
   1426.2 ms  ✓ CRlibm_jll
   1438.2 ms  ✓ JpegTurbo_jll
   1401.4 ms  ✓ XZ_jll
   1375.3 ms  ✓ Ogg_jll
   1432.3 ms  ✓ NLopt_jll
   1403.8 ms  ✓ oneTBB_jll
   1375.0 ms  ✓ Xorg_libXdmcp_jll
   1436.1 ms  ✓ x265_jll
   1412.7 ms  ✓ x264_jll
   1376.0 ms  ✓ Arpack_jll
   1447.5 ms  ✓ libaom_jll
   1423.2 ms  ✓ Zstd_jll
   1421.7 ms  ✓ Expat_jll
   1366.0 ms  ✓ LZO_jll
   1374.2 ms  ✓ Opus_jll
   1234.7 ms  ✓ Xorg_xtrans_jll
   1409.6 ms  ✓ Libiconv_jll
   1399.9 ms  ✓ Libffi_jll
   1407.7 ms  ✓ isoband_jll
   1427.9 ms  ✓ FFTW_jll
   1425.7 ms  ✓ OpenSpecFun_jll
   1423.1 ms  ✓ Libuuid_jll
   1977.6 ms  ✓ FriBidi_jll
  13441.2 ms  ✓ StaticArrays
   2886.2 ms  ✓ RecipesBase
   3131.3 ms  ✓ StringManipulation
   2508.1 ms  ✓ BioSymbols
  16820.4 ms  ✓ SIMD
  16676.9 ms  ✓ Parsers
           ✗ JLD2
   4223.6 ms  ✓ DataStructures
   2410.5 ms  ✓ FilePathsBase
   2643.2 ms  ✓ ChainRulesCore
   1772.8 ms  ✓ StructArrays
   6448.0 ms  ✓ StableHashTraits
   6049.1 ms  ✓ QOI
   3791.4 ms  ✓ ColorVectorSpace
   6854.8 ms  ✓ Colors
   1308.7 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
    897.6 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   1402.7 ms  ✓ Pixman_jll
   1638.6 ms  ✓ FreeType2_jll
   1804.2 ms  ✓ Rmath
   1654.1 ms  ✓ OpenEXR_jll
   1618.6 ms  ✓ CRlibm
   1640.5 ms  ✓ libsixel_jll
   1578.4 ms  ✓ libvorbis_jll
           ✗ NLopt
   8281.0 ms  ✓ MKL_jll
   1693.9 ms  ✓ Xorg_libxcb_jll
   1769.6 ms  ✓ Arpack
   1632.2 ms  ✓ Libtiff_jll
   1572.1 ms  ✓ XML2_jll
   1185.3 ms  ✓ Isoband
   5259.9 ms  ✓ SpecialFunctions
   1565.3 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1593.8 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1563.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1537.2 ms  ✓ Adapt → AdaptStaticArraysExt
  34543.2 ms  ✓ Polynomials
   1451.9 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
  28943.8 ms  ✓ PrettyTables
   9579.9 ms  ✓ BioSequences
  20162.3 ms  ✓ Automa
   4108.6 ms  ✓ JSON
   1151.2 ms  ✓ InlineStrings → ParsersExt
   1963.5 ms  ✓ SortingAlgorithms
   2972.4 ms  ✓ QuadGK
   1976.4 ms  ✓ SimplePartitions
 117565.6 ms  ✓ TiffImages
   1267.7 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   3188.5 ms  ✓ FilePathsBase → FilePathsBaseTestExt
   1745.6 ms  ✓ FilePaths
   1379.7 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
   1067.6 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
   1028.9 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
   1016.1 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
   1034.3 ms  ✓ Distances → DistancesChainRulesCoreExt
   3177.3 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
   1150.2 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
   1644.4 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
   1017.3 ms  ✓ StructArrays → StructArraysAdaptExt
   1399.0 ms  ✓ StructArrays → StructArraysSparseArraysExt
   1788.3 ms  ✓ StructArrays → StructArraysStaticArraysExt
   1027.5 ms  ✓ StructArrays → StructArraysLinearAlgebraExt
   1467.6 ms  ✓ Graphics
   1490.5 ms  ✓ Animations
  30511.0 ms  ✓ ImageCore
   7530.0 ms  ✓ ColorSchemes
   1395.9 ms  ✓ FiniteDiff
   2039.8 ms  ✓ FreeType
   1770.5 ms  ✓ Fontconfig_jll
   6500.1 ms  ✓ OpenEXR
   7625.1 ms  ✓ IntervalArithmetic
   6806.2 ms  ✓ FFTW
   1634.4 ms  ✓ Xorg_libX11_jll
   1314.2 ms  ✓ LightXML
   1605.4 ms  ✓ Gettext_jll
   4264.3 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   2543.3 ms  ✓ HypergeometricFunctions
   1399.3 ms  ✓ DiffRules
   1951.0 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   4376.3 ms  ✓ NearestNeighbors
   5970.3 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   3987.6 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   4279.7 ms  ✓ SimplePolynomials
  21514.1 ms  ✓ FASTX
   3653.4 ms  ✓ ColorBrewer
   2437.1 ms  ✓ WeakRefStrings
   8566.1 ms  ✓ StatsBase
  84055.5 ms  ✓ DataFrames
   4371.9 ms  ✓ Interpolations
  11076.6 ms  ✓ GeometryBasics
   4413.4 ms  ✓ ImageBase
   6676.9 ms  ✓ PNGFiles
  10647.3 ms  ✓ Sixel
  11166.9 ms  ✓ JpegTurbo
  17242.0 ms  ✓ PlotUtils
   1328.7 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1590.5 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
   1075.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   1735.8 ms  ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt
   1331.3 ms  ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt
   3578.9 ms  ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt
   2037.0 ms  ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt
   4095.8 ms  ✓ Polynomials → PolynomialsFFTWExt
   1692.6 ms  ✓ Xorg_libXrender_jll
   1634.8 ms  ✓ Xorg_libXext_jll
   1732.7 ms  ✓ Glib_jll
   3121.3 ms  ✓ StatsFuns
   8940.1 ms  ✓ ForwardDiff
   1306.1 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
   4127.7 ms  ✓ LinearAlgebraX
   2319.0 ms  ✓ FASTX → BioSequencesExt
  29203.4 ms  ✓ CSV
   7611.8 ms  ✓ ParallelKMeans
   8318.4 ms  ✓ Clustering
  11202.2 ms  ✓ GridLayoutBase
   3064.9 ms  ✓ Packing
   3669.3 ms  ✓ ShaderAbstractions
   4786.0 ms  ✓ FreeTypeAbstraction
   6396.4 ms  ✓ ImageAxes
   9957.0 ms  ✓ ExactPredicates
   1653.1 ms  ✓ Libglvnd_jll
   1712.5 ms  ✓ Cairo_jll
   3696.5 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
   8803.8 ms  ✓ StatsModels
  13745.4 ms  ✓ Distributions
   4189.5 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   1772.7 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   1930.0 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
  24951.4 ms  ✓ MathTeXEngine
   4670.8 ms  ✓ ImageMetadata
   1799.1 ms  ✓ libwebp_jll
   1753.0 ms  ✓ HarfBuzz_jll
   6025.0 ms  ✓ Distributions → DistributionsTestExt
   5677.9 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   5478.5 ms  ✓ SimpleRandom
   9198.1 ms  ✓ GLM
   8444.4 ms  ✓ MultivariateStats
           ✗ GaussianMixtures
   4443.1 ms  ✓ NLSolversBase
  10264.1 ms  ✓ Netpbm
   9963.9 ms  ✓ WebP
   1931.5 ms  ✓ libass_jll
   1762.4 ms  ✓ Pango_jll
   7378.5 ms  ✓ KernelDensity
           ✗ PhyloNetworks
   6622.7 ms  ✓ LineSearches
   5744.8 ms  ✓ ImageIO
   2050.6 ms  ✓ FFMPEG_jll
   2868.2 ms  ✓ Cairo
  11189.8 ms  ✓ Optim
  10179.4 ms  ✓ SimpleGraphs
  13731.3 ms  ✓ DelaunayTriangulation
 195022.6 ms  ✓ Makie
 156828.8 ms  ✓ CairoMakie
           ✗ PhyloClustering
  318 dependencies successfully precompiled in 1751 seconds. 40 already precompiled.
  4 dependencies had output during precompilation:
┌ Formatting
│  ┌ Warning: DEPRECATION NOTICE
│  │ 
│  │ Formatting.jl has been unmaintained for a while, with some serious
│  │ correctness bugs compromising the original purpose of the package. As a result,
│  │ it has been deprecated - consider using an alternative, such as
│  │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│  │ 
│  │ If you are not using Formatting.jl as a direct dependency, please consider
│  │ opening an issue on any packages you are using that do use it as a dependency.
│  │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│  │ package originally brings it in as a dependency.
│  └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
└  
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
└  
┌ StableRNGs
│  WARNING: Constructor for type "Sampler" was extended in `StableRNGs` without explicit qualification or import.
│    NOTE: Assumed "Sampler" refers to `Random.Sampler`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Sampler end`.
│    Hint: To silence the warning, qualify `Sampler` as `Random.Sampler` in the method signature or explicitly `import Random: Sampler`.
└  
┌ Makie
│  ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
│  └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_p0J9mK" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2979
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2825
 [7] include_string
   @ ./loading.jl:2835 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_70XJ49" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2979
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [24] include_string
    @ ./loading.jl:2835 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_XrAIAs" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
 [19] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2979
 [22] top-level scope
    @ stdin:5
 [23] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [25] include_string
    @ ./loading.jl:2835 [inlined]
 [26] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [27] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 1741.35s



################################################################################
# Loading
#

Loading PhyloClustering...
Precompiling packages...
           ✗ NLopt
           ✗ JLD2
           ✗ PhyloNetworks
           ✗ GaussianMixtures
Info Given PhyloClustering was explicitly requested, output will be shown live 
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2979
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2825
 [7] include_string
   @ ./loading.jl:2835 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_g5BiwR" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2979
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [24] include_string
    @ ./loading.jl:2835 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_zH2aH6" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
 [19] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2979
 [22] top-level scope
    @ stdin:5
 [23] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [25] include_string
    @ ./loading.jl:2835 [inlined]
 [26] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [27] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:5
           ✗ PhyloClustering
  0 dependencies successfully precompiled in 168 seconds. 358 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_kkqZIw" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2979
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2825
 [7] include_string
   @ ./loading.jl:2835 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_g5BiwR" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2979
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [24] include_string
    @ ./loading.jl:2835 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_zH2aH6" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3266
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3837
 [11] maybe_cachefile_lock
    @ ./loading.jl:3834 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2335
 [18] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
 [19] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2979
 [22] top-level scope
    @ stdin:5
 [23] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2825
 [25] include_string
    @ ./loading.jl:2835 [inlined]
 [26] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [27] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:

Loading failed after 169.47s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PhyloClustering'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 1995.93s: package has syntax issues