Package evaluation of UMAP on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:09:07.151


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.55s


################################################################################
# Installation
#

Installing UMAP...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [c4f8c510] + UMAP v0.1.11
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.18.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [187b0558] + ConstructionBase v1.5.8
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.50
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [f6369f11] + ForwardDiff v1.0.1
  [86223c79] + Graphs v1.12.1
  [34004b35] + HypergeometricFunctions v0.3.28
  [d25df0c9] + Inflate v0.1.5
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [2fda8390] + LsqFit v0.15.1
  [1914dd2f] + MacroTools v0.5.15
  [e1d29d7a] + Missings v1.2.0
  [d41bc354] + NLSolversBase v7.9.1
  [77ba4419] + NaNMath v1.1.3
  [dd2c4c9e] + NearestNeighborDescent v0.3.6
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [efcf1570] + Setfield v1.1.2
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.4.0
  [c4f8c510] + UMAP v0.1.11
⌅ [68821587] + Arpack_jll v3.5.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.41s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 57.11s


################################################################################
# Testing
#

     Testing UMAP
      Status `/tmp/jl_6OAogm/Project.toml`
  [7d9fca2a] Arpack v0.5.4
  [b4f34e82] Distances v0.10.12
  [2fda8390] LsqFit v0.15.1
  [dd2c4c9e] NearestNeighborDescent v0.3.6
  [c4f8c510] UMAP v0.1.11
  [37e2e46d] LinearAlgebra v1.11.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_6OAogm/Manifest.toml`
  [47edcb42] ADTypes v1.14.0
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.18.0
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [187b0558] ConstructionBase v1.5.8
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.6.50
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.27.0
  [f6369f11] ForwardDiff v1.0.1
  [86223c79] Graphs v1.12.1
  [34004b35] HypergeometricFunctions v0.3.28
  [d25df0c9] Inflate v0.1.5
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [2fda8390] LsqFit v0.15.1
  [1914dd2f] MacroTools v0.5.15
  [e1d29d7a] Missings v1.2.0
  [d41bc354] NLSolversBase v7.9.1
  [77ba4419] NaNMath v1.1.3
  [dd2c4c9e] NearestNeighborDescent v0.3.6
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [efcf1570] Setfield v1.1.2
  [699a6c99] SimpleTraits v0.9.4
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [c4f8c510] UMAP v0.1.11
⌅ [68821587] Arpack_jll v3.5.1+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: `pairwise!(r::AbstractMatrix, dist::PreMetric, a::AbstractMatrix; dims::Union{Nothing, Integer} = nothing)` is deprecated, use `pairwise!(dist, r, a; dims = dims)` instead.
│   caller = knn_search at utils.jl:63 [inlined]
└ @ Core ~/.julia/packages/UMAP/KjtQ5/src/utils.jl:63
┌ Warning: `pairwise!(r::AbstractMatrix, dist::PreMetric, a::AbstractMatrix; dims::Union{Nothing, Integer} = nothing)` is deprecated, use `pairwise!(dist, r, a; dims = dims)` instead.
│   caller = knn_search(X::Matrix{Float64}, k::Int64, metric::Euclidean, ::Val{:pairwise}) at utils.jl:63
└ @ UMAP ~/.julia/packages/UMAP/KjtQ5/src/utils.jl:63
Test Summary: | Pass  Total   Time
utils tests   |    9      9  34.4s
┌ Warning: `pairwise!(r::AbstractMatrix, dist::PreMetric, a::AbstractMatrix; dims::Union{Nothing, Integer} = nothing)` is deprecated, use `pairwise!(dist, r, a; dims = dims)` instead.
│   caller = knn_search at utils.jl:63 [inlined]
└ @ Core ~/.julia/packages/UMAP/KjtQ5/src/utils.jl:63
┌ Info: Arpack.XYAUPD_Exception(1)
└ Error encountered in spectral_layout; defaulting to random layout
┌ Info: Arpack.XYAUPD_Exception(1)
└ Error encountered in spectral_layout; defaulting to random layout
Test Summary: | Pass  Total     Time
umap tests    |   71     71  2m40.1s
     Testing UMAP tests passed 

Testing completed after 206.14s

PkgEval succeeded after 286.28s