Package evaluation of TrajGWAS on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T21:15:13.166 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.88s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [9514c204] + TrajGWAS v0.4.6 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 ⌅ [67c07d97] + Automa v0.8.4 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.14.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.8.0 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.38.1 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.16.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 [9514c204] + TrajGWAS v0.4.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [2ff19380] + WiSER v0.2.6 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [76ed43ae] + SQLite_jll v3.48.0+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 895.28s ################################################################################ # Testing # Testing TrajGWAS Status `/tmp/jl_t2zzVL/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.118 ⌅ [a98d9a8b] Interpolations v0.14.0 [b8f27783] MathOptInterface v1.38.1 [429524aa] Optim v1.12.0 [189a3867] Reexport v1.2.2 [4e780e97] SnpArrays v0.3.22 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [3eaba693] StatsModels v0.7.4 [bd369af6] Tables v1.12.0 [9514c204] TrajGWAS v0.4.6 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.6 [2ff19380] WiSER v0.2.6 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_t2zzVL/Manifest.toml` [47edcb42] ADTypes v1.14.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 ⌅ [67c07d97] Automa v0.8.4 ⌃ [13072b0f] AxisAlgorithms v1.0.1 ⌅ [6db4b851] BGEN v0.1.17 [28d598bf] BGZFStreams v0.3.2 [6e4b80f9] BenchmarkTools v1.6.0 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [c27321d9] Glob v1.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 ⌅ [a98d9a8b] Interpolations v0.14.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [b6b21f68] Ipopt v1.8.0 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.172 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.38.1 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.1 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.16.0 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [fdea26ae] SIMD v3.7.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0aa819cd] SQLite v1.6.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [9514c204] TrajGWAS v0.4.6 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [ea10d353] WeakRefStrings v1.4.2 [2ff19380] WiSER v0.2.6 ⌅ [efce3f68] WoodburyMatrices v0.5.6 [76eceee3] WorkerUtilities v1.6.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.12.0+0 [9cc047cb] Ipopt_jll v300.1400.1700+0 [d00139f3] METIS_jll v5.1.3+0 [d7ed1dd3] MUMPS_seq_jll v500.700.301+0 [079eb43e] NLopt_jll v2.10.0+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [319450e9] SPRAL_jll v2024.5.8+0 [76ed43ae] SQLite_jll v3.48.0+0 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ****************************************************************************** This program contains Ipopt, a library for large-scale nonlinear optimization. Ipopt is released as open source code under the Eclipse Public License (EPL). For more information visit https://github.com/coin-or/Ipopt ****************************************************************************** run = 1, ‖Δβ‖ = 0.226739, ‖Δτ‖ = 0.457389, ‖ΔL‖ = 0.109248, status = LOCALLY_SOLVED, time(s) = 2.658897 run = 2, ‖Δβ‖ = 0.057532, ‖Δτ‖ = 0.014932, ‖ΔL‖ = 0.041254, status = LOCALLY_SOLVED, time(s) = 0.180183 Test Summary: | Pass Total Time generic | 4 4 58.0s Test Summary: | Pass Total Time generic_invariant | 4 4 16.8s run = 1, ‖Δβ‖ = 0.037090, ‖Δτ‖ = 0.136339, ‖ΔL‖ = 0.005441, status = LOCALLY_SOLVED, time(s) = 0.104728 run = 2, ‖Δβ‖ = 0.000913, ‖Δτ‖ = 0.019810, ‖ΔL‖ = 0.001582, status = LOCALLY_SOLVED, time(s) = 0.101799 0.2089229077734306 0.19055788036352628 run = 1, ‖Δβ‖ = 0.037090, ‖Δτ‖ = 0.136339, ‖ΔL‖ = 0.005441, status = LOCALLY_SOLVED, time(s) = 0.105376 run = 2, ‖Δβ‖ = 0.000913, ‖Δτ‖ = 0.019810, ‖ΔL‖ = 0.001582, status = LOCALLY_SOLVED, time(s) = 0.098997 WARNING: using deprecated binding Distributions.MatrixReshaped in WiSER. , use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. WARNING: using deprecated binding WiSER.MatrixReshaped in TrajGWAS. , use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. trajgwas_singlesnp_plink: Error During Test at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/test/runtests.jl:89 Got exception outside of a @test UndefVarError: `linear_interpolation` not defined in `TrajGWAS` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] ecgf(vs::Vector{Float64}, zs::Vector{Float64}) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/spa.jl:39 [2] ecgf(z::Vector{Float64}; knots::Int64) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/spa.jl:13 [3] ecgf @ ~/.julia/packages/TrajGWAS/R4aGq/src/spa.jl:7 [inlined] [4] ecgf(st::WSVarScoreTestInvariant{Float64}) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/spa.jl:58 [5] (::TrajGWAS.var"#27#39"{FormulaTerm{Term, Term}, Bool, Symbol, Val{1}, Bool, Bool, UnitRange{Int64}, Ipopt.Optimizer, Dict{String, Any}, typeof(init_ls!), Bool, Int64, Float64, Nothing, Float64, WSVarLmmModel{Float64}, String, Bool, Vector{Float64}, Matrix{Int64}, SnpArrays.SnpArray})(io::IOStream) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/gwas.jl:456 [6] makestream(::TrajGWAS.var"#27#39"{FormulaTerm{Term, Term}, Bool, Symbol, Val{1}, Bool, Bool, UnitRange{Int64}, Ipopt.Optimizer, Dict{String, Any}, typeof(init_ls!), Bool, Int64, Float64, Nothing, Float64, WSVarLmmModel{Float64}, String, Bool, Vector{Float64}, Matrix{Int64}, SnpArrays.SnpArray}, ::String, ::Vararg{String}) @ SnpArrays ~/.julia/packages/SnpArrays/CSYLc/src/codec.jl:31 [7] trajgwas(fittednullmodel::WSVarLmmModel{Float64}, bedfile::String, bimfile::String, bedn::Int64; analysistype::String, testformula::FormulaTerm{Term, Term}, disable_wsvar::Bool, test::Symbol, pvalfile::String, snpmodel::Val{1}, snpinds::Nothing, usespa::Bool, reportchisq::Bool, bedrowinds::UnitRange{Int64}, solver::Ipopt.Optimizer, solver_config::Dict{String, Any}, init::typeof(init_ls!), parallel::Bool, runs::Int64, verbose::Bool, snpset::Nothing, e::Nothing, r::Float64, adjustor::Nothing, adj_cutoff::Float64) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/gwas.jl:446 [8] trajgwas(fittednullmodel::WSVarLmmModel{Float64}, geneticfile::String; analysistype::String, geneticformat::String, vcftype::Nothing, samplepath::Nothing, testformula::FormulaTerm{Term, Term}, testformula_wsvar::FormulaTerm{Term, Term}, test::Symbol, init::Function, pvalfile::String, snpmodel::Val{1}, snpinds::Nothing, usespa::Bool, reportchisq::Bool, geneticrowinds::Nothing, solver::Ipopt.Optimizer, solver_config::Dict{String, Any}, parallel::Bool, runs::Int64, verbose::Bool, snpset::Nothing, e::Nothing, kwargs::@Kwargs{}) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/gwas.jl:305 [9] trajgwas(nullmeanformula::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, Term}}, reformula::FormulaTerm{Term, ConstantTerm{Int64}}, nullwsvarformula::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, Term}}, idvar::Symbol, nulldf::DataFrame, geneticfile::String; nullfile::String, solver::Ipopt.Optimizer, solver_config::Dict{String, Any}, parallel::Bool, runs::Int64, verbose::Bool, init::typeof(init_ls!), test::Symbol, kwargs::@Kwargs{pvalfile::String, usespa::Bool}) @ TrajGWAS ~/.julia/packages/TrajGWAS/R4aGq/src/gwas.jl:182 [10] #trajgwas#9 @ ~/.julia/packages/TrajGWAS/R4aGq/src/gwas.jl:145 [inlined] [11] macro expansion @ ~/.julia/packages/TrajGWAS/R4aGq/test/runtests.jl:106 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [13] top-level scope @ ~/.julia/packages/TrajGWAS/R4aGq/test/runtests.jl:90 [14] include(fname::String) @ Main ./sysimg.jl:38 [15] top-level scope @ none:6 [16] eval @ ./boot.jl:430 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [18] _start() @ Base ./client.jl:531 Test Summary: | Pass Error Total Time trajgwas_singlesnp_plink | 1 1 2 1m26.1s ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/test/runtests.jl:89 Testing failed after 352.32s ERROR: LoadError: Package TrajGWAS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1304.75s: package tests unexpectedly errored