Package evaluation of TMLE on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T21:00:43.427 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.01s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8afdd2fb] + TMLE v0.18.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [15f4f7f2] + AutoHashEquals v2.2.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [38e38edf] + GLM v1.9.0 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.1 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [7869d1d1] + IRTools v0.4.14 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.12 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.34 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v1.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.8.1 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.11.0 [d491faf4] + MLJModels v0.17.9 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.15 [fa8bd995] + MetaGraphsNext v0.7.3 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.30 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [8afdd2fb] + TMLE v0.18.0 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [e88e6eb3] + Zygote v0.7.6 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:63 Precompiling package dependencies... Precompilation completed after 1121.95s ################################################################################ # Testing # Testing TMLE ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920 Status `/tmp/jl_B5uOK2/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [6af48e0c] CausalTables v1.2.4 [861a8166] Combinatorics v1.0.2 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.118 [09f84164] HypothesisTests v0.11.5 [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [a7f614a8] MLJBase v1.7.0 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.0 [d491faf4] MLJModels v0.17.9 [bac558e1] OrderedCollections v1.8.0 [860ef19b] StableRNGs v1.0.2 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [8afdd2fb] TMLE v0.18.0 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.0 [ddb6d928] YAML v0.4.13 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_B5uOK2/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [15f4f7f2] AutoHashEquals v2.2.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [6af48e0c] CausalTables v1.2.4 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [38e38edf] GLM v1.9.0 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.12.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [7869d1d1] IRTools v0.4.14 [313cdc1a] Indexing v1.1.1 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.12 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [92ad9a40] LearnAPI v0.1.0 [d3d80556] LineSearches v7.3.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [a7f614a8] MLJBase v1.7.0 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.0 [e80e1ace] MLJModelInterface v1.11.0 [d491faf4] MLJModels v0.17.9 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.15 [fa8bd995] MetaGraphsNext v0.7.3 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.1 [872c559c] NNlib v0.9.30 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [d9ec5142] NamedTupleTools v0.14.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [03a91e81] SplitApplyCombine v1.2.3 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [3eaba693] StatsModels v0.7.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [8afdd2fb] TMLE v0.18.0 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.13 [e88e6eb3] Zygote v0.7.6 [700de1a5] ZygoteRules v0.2.7 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling MLJLinearModels... 2612.5 ms ✓ NLSolversBase 5111.5 ms ✓ LineSearches 8000.6 ms ✓ Optim 8261.2 ms ✓ MLJLinearModels 4 dependencies successfully precompiled in 26 seconds. 75 already precompiled. Precompiling ArrayInterfaceChainRulesExt... 2116.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 3 seconds. 40 already precompiled. Test Summary: | Pass Total Time Test expected_value | 3 3 1m02.5s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 11.1s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 21.7s Test Summary: | Pass Total Time Test SCM | 17 17 4.4s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.2s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 3.5s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.3s Test Summary: | Pass Total Time Test ConditionalDistribution | 3 3 0.3s Test Summary: | Pass Total Time Test CMRelevantFactors | 2 2 0.5s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 5 5 4.6s Precompiling DataFrames... 73626.7 ms ✓ DataFrames 1 dependency successfully precompiled in 75 seconds. 32 already precompiled. Precompiling BangBangDataFramesExt... 4487.2 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 5 seconds. 45 already precompiled. Precompiling TransducersDataFramesExt... 3539.3 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 4 seconds. 61 already precompiled. Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: binary outcome | 11 11 55.9s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: continuous outcome | 7 7 12.2s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Binary outcome | 14 14 11.0s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Continuous outcome | 7 7 0.9s Precompiling StatisticalMeasures... 45781.6 ms ✓ StatisticalMeasures 10701.4 ms ✓ StatisticalMeasures → ScientificTypesExt 2 dependencies successfully precompiled in 61 seconds. 134 already precompiled. Precompiling DefaultMeasuresExt... 10459.5 ms ✓ MLJBase → DefaultMeasuresExt 1 dependency successfully precompiled in 15 seconds. 145 already precompiled. Test Summary: | Pass Total Time Test nomissing | 9 9 10.1s ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 Test Summary: | Pass Total Time Test estimation with missing values and ordered factor treatment | 2 2 1m39.0s Test Summary: | Pass Total Time Test cov | 2 2 5.5s ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 Test Summary: | Pass Total Time Test composition CM(1) - CM(0) = ATE(1,0) | 8 8 1m27.8s ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 Dict{Symbol, Any}(:f => "Main.f", :type => "ComposedEstimand", :estimand => Dict{Symbol, Any}(:type => "JointEstimand", :args => Dict{Symbol, Any}[Dict(:outcome_extra_covariates => Union{}[], :type => "CM", :treatment_values => OrderedCollections.OrderedDict(:T => 1), :outcome => :Y, :treatment_confounders => Dict(:T => [:W])), Dict(:outcome_extra_covariates => Union{}[], :type => "CM", :treatment_values => OrderedCollections.OrderedDict(:T => 0), :outcome => :Y, :treatment_confounders => Dict(:T => [:W]))])) Test Summary: | Pass Total Time Test compose multidimensional function | 8 8 14.4s ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 Precompiling CategoricalArraysJSONExt... 1440.8 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 2 seconds. 16 already precompiled. Precompiling JSONExt... 6646.3 ms ✓ Zygote → ZygoteDistancesExt 24665.8 ms ✓ TMLE → JSONExt 2 dependencies successfully precompiled in 42 seconds. 231 already precompiled. Test Summary: | Pass Total Time Test Joint Interaction | 19 19 1m22.5s ┌ Warning: The TreatmentTransformer is deprecated and will be removed in future version, it has been replaced by MLJModels.ContinuousEncoder. │ caller = macro expansion at treatment_transformer.jl:18 [inlined] └ @ Core ~/.julia/packages/TMLE/UigWe/test/treatment_transformer.jl:18 Test Summary: | Pass Total Time Test TreatmentTransformer | 2 2 8.7s Test Summary: | Pass Total Time Test Configurations | 8 8 21.7s Test Summary: | Pass Total Time Test with an SCM and causal estimands | 6 6 1.5s Test Summary: | Pass Total Time Test serialization | 3 3 3.5s Test Summary: | Pass Total Time Test misc | 127 127 19.1s Test Summary: | Pass Total Time Test ordering strategies | 8 8 3.7s Test Summary: | Pass Total Time Test ordering strategies with Joint Estimands | 4 4 4.1s WARNING: replacing module TestEstimands. Test Summary: | Pass Total Time Test StatisticalCMCompositeEstimand | 8 8 6.5s Test Summary: | Pass Total Time Test standardization of StatisticalCMCompositeEstimand | 10 10 2.2s Test Summary: | Pass Total Time Test structs are concrete types | 3 3 0.0s Test Summary: | Pass Total Time Test dictionary conversion | 8 8 7.7s Test Summary: | Pass Total Time Test control_case_settings | 6 6 11.8s Test Summary: | Pass Total Time Test unique_treatment_values | 2 2 13.7s Test Summary: | Pass Total Time factorialEstimand errors | 2 2 2.8s Test Summary: | Pass Total Time Test factorial CM | 2 2 3.1s Test Summary: | Pass Total Time Test factorial ATE | 3 3 5.3s Test Summary: | Pass Total Time Test factorial AIE | 3 3 3.6s Test Summary: | Pass Total Time Test factorialEstimands | 2 2 0.1s Test Summary: | Pass Total Time Test ps_lower_bound | 5 5 0.1s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 1 treatment | 4 4 17.4s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 2 treatments | 2 2 1.2s Test Summary: | Pass Total Time Test compute_offset, clever_covariate_and_weights: 3 treatments | 2 2 22.4s ┌ Warning: f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol. └ @ Optim ~/.julia/packages/Optim/8dE7C/src/types.jl:120 Test Summary: | Pass Total Time Test gradient_and_plugin_estimate | 5 5 33.7s [ Info: TMLE step: 1. [ Info: Convergence criterion reached. Test Summary: | Pass Total Time Test Fluctuation with 1 Treatments | 21 21 16.1s [ Info: TMLE step: 1. [ Info: Convergence criterion reached. Test Summary: | Pass Total Time Test Fluctuation with 2 Treatments | 11 11 16.1s Test Summary: | Pass Total Time Test same_type_nt | 6 6 0.5s Precompiling CSV... 1870.9 ms ✓ WeakRefStrings 28385.6 ms ✓ CSV 2 dependencies successfully precompiled in 31 seconds. 28 already precompiled. Test CMRelevantFactorsEstimator: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:45 Expression: η̂(η, dataset; cache = cache, verbosity = 1) Log Pattern: fit_log... Captured Logs: LogRecord(Info, "Required Relevant Factors: \n- P₀(Y | T₁, W)\n- P₀(T₁ | W)", TMLE, :estimators, :TMLE_22191201, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/counterfactual_mean_based/estimators.jl", 69, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Estimating: P₀(T₁ | W)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 20, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol.", Optim, :types, :Optim_cc0ddb72, "/home/pkgeval/.julia/packages/Optim/8dE7C/src/types.jl", 120, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Estimating: P₀(Y | T₁, W)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 20, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.11/Test/src/logging.jl:166 [2] macro expansion @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:45 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:27 Test CMRelevantFactorsEstimator: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:73 Expression: new_η̂(η, dataset; cache = cache, verbosity = 1) Log Pattern: partial_reuse_log... Captured Logs: LogRecord(Info, "Required Relevant Factors: \n- P₀(Y | T₁, W)\n- P₀(T₁ | W)", TMLE, :estimators, :TMLE_22191201, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/counterfactual_mean_based/estimators.jl", 69, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Estimating: P₀(T₁ | W)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 20, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol.", Optim, :types, :Optim_cc0ddb72, "/home/pkgeval/.julia/packages/Optim/8dE7C/src/types.jl", 120, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Reusing estimate for: P₀(Y | T₁, W)", TMLE, :estimators, :TMLE_d0bafdc7, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 16, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.11/Test/src/logging.jl:166 [2] macro expansion @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:73 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:27 Test CMRelevantFactorsEstimator: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:78 Expression: resampled_η̂(η, dataset; cache = cache, verbosity = 1) Log Pattern: fit_log... Captured Logs: LogRecord(Info, "Required Relevant Factors: \n- P₀(Y | T₁, W)\n- P₀(T₁ | W)", TMLE, :estimators, :TMLE_22191201, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/counterfactual_mean_based/estimators.jl", 69, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Estimating: P₀(T₁ | W)", TMLE, :estimators, :TMLE_68cc6cb5, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 58, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol.", Optim, :types, :Optim_cc0ddb72, "/home/pkgeval/.julia/packages/Optim/8dE7C/src/types.jl", 120, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol.", Optim, :types, :Optim_cc0ddb72, "/home/pkgeval/.julia/packages/Optim/8dE7C/src/types.jl", 120, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "f_tol is deprecated. Use f_abstol or f_reltol instead. The provided value (0.0001) will be used as f_reltol.", Optim, :types, :Optim_cc0ddb72, "/home/pkgeval/.julia/packages/Optim/8dE7C/src/types.jl", 120, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Info, "Estimating: P₀(Y | T₁, W)", TMLE, :estimators, :TMLE_68cc6cb5, "/home/pkgeval/.julia/packages/TMLE/UigWe/src/estimators.jl", 58, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.11/Test/src/logging.jl:166 [2] macro expansion @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:78 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:27 Test Summary: | Pass Fail Total Time Test CMRelevantFactorsEstimator | 11 3 14 20.9s Error During Test at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:25 Test threw exception Expression: include(joinpath(TEST_DIR, "counterfactual_mean_based/estimators_and_estimates.jl")) LoadError: Some tests did not pass: 11 passed, 3 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TMLE/UigWe/test/counterfactual_mean_based/estimators_and_estimates.jl:1 ERROR: LoadError: There was an error during testing in expression starting at /home/pkgeval/.julia/packages/TMLE/UigWe/test/runtests.jl:6 Testing failed after 1036.96s ERROR: LoadError: Package TMLE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2274.17s: package has test failures