Package evaluation of SurvivalAnalysis on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:37:22.638


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.55s


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# Installation
#

Installing SurvivalAnalysis...
   Resolving package versions...
   Installed Conda ─ v1.10.2
   Installed RCall ─ v0.13.18
    Updating `~/.julia/environments/v1.11/Project.toml`
  [d1dd7d07] + SurvivalAnalysis v0.1.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [79e6a3ab] + Adapt v4.3.0
  [4fba245c] + ArrayInterface v7.18.0
  [324d7699] + CategoricalArrays v0.10.8
  [d360d2e6] + ChainRulesCore v1.25.1
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [8f4d0f93] + Conda v1.10.2
  [187b0558] + ConstructionBase v1.5.8
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
⌃ [a93c6f00] + DataFrames v1.3.6
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b429d917] + DensityInterface v0.4.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.50
⌅ [31c24e10] + Distributions v0.25.67
  [ffbed154] + DocStringExtensions v0.9.4
  [4e289a0a] + EnumX v1.0.5
⌅ [1a297f60] + FillArrays v0.13.11
  [6a86dc24] + FiniteDiff v2.27.0
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.0.1
  [34004b35] + HypergeometricFunctions v0.3.28
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [d3d80556] + LineSearches v7.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.15
  [e1d29d7a] + Missings v1.2.0
  [d41bc354] + NLSolversBase v7.9.1
  [77ba4419] + NaNMath v1.1.3
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.1
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
⌅ [08abe8d2] + PrettyTables v1.3.1
  [1fd47b50] + QuadGK v2.11.2
⌅ [6f49c342] + RCall v0.13.18
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [efcf1570] + Setfield v1.1.2
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.4.0
⌅ [3eaba693] + StatsModels v0.6.33
  [d1dd7d07] + SurvivalAnalysis v0.1.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3a884ed6] + UnPack v1.0.2
  [81def892] + VersionParsing v1.3.0
  [1b915085] + WinReg v1.0.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3084689b18f9e5e817a6ce9a83a7654d8ad0f2f6/build.log`

Installation completed after 108.98s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 157.06s


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# Testing
#

     Testing SurvivalAnalysis
      Status `/tmp/jl_fjZ9wd/Project.toml`
⌃ [a93c6f00] DataFrames v1.3.6
⌅ [31c24e10] Distributions v0.25.67
  [d41bc354] NLSolversBase v7.9.1
  [429524aa] Optim v1.12.0
⌅ [08abe8d2] PrettyTables v1.3.1
⌅ [6f49c342] RCall v0.13.18
  [3cdcf5f2] RecipesBase v1.3.4
⌅ [2913bbd2] StatsBase v0.33.21
⌅ [3eaba693] StatsModels v0.6.33
  [d1dd7d07] SurvivalAnalysis v0.1.0
  [37e2e46d] LinearAlgebra v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_fjZ9wd/Manifest.toml`
  [47edcb42] ADTypes v1.14.0
  [79e6a3ab] Adapt v4.3.0
  [4fba245c] ArrayInterface v7.18.0
  [324d7699] CategoricalArrays v0.10.8
  [d360d2e6] ChainRulesCore v1.25.1
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [8f4d0f93] Conda v1.10.2
  [187b0558] ConstructionBase v1.5.8
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
⌃ [a93c6f00] DataFrames v1.3.6
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [b429d917] DensityInterface v0.4.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.6.50
⌅ [31c24e10] Distributions v0.25.67
  [ffbed154] DocStringExtensions v0.9.4
  [4e289a0a] EnumX v1.0.5
⌅ [1a297f60] FillArrays v0.13.11
  [6a86dc24] FiniteDiff v2.27.0
  [59287772] Formatting v0.4.3
  [f6369f11] ForwardDiff v1.0.1
  [34004b35] HypergeometricFunctions v0.3.28
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [d3d80556] LineSearches v7.3.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.15
  [e1d29d7a] Missings v1.2.0
  [d41bc354] NLSolversBase v7.9.1
  [77ba4419] NaNMath v1.1.3
  [429524aa] Optim v1.12.0
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
⌅ [08abe8d2] PrettyTables v1.3.1
  [1fd47b50] QuadGK v2.11.2
⌅ [6f49c342] RCall v0.13.18
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [efcf1570] Setfield v1.1.2
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.4.0
⌅ [3eaba693] StatsModels v0.6.33
  [d1dd7d07] SurvivalAnalysis v0.1.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [3a884ed6] UnPack v1.0.2
  [81def892] VersionParsing v1.3.0
  [1b915085] WinReg v1.0.0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling CategoricalArraysRecipesBaseExt...
   2087.1 ms  ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt
  1 dependency successfully precompiled in 3 seconds. 14 already precompiled.
PH(distr=Exponential{Float64}(θ=0.2), lp=0.1)AFT(distr=Exponential{Float64}(θ=0.2), lp=0.1)Test Summary:                       | Pass  Total  Time
ContinuousUnivariateDistribution.jl |   17     17  4.2s
StatsModels.TableStatisticalModel{ParametricAFT{Weibull}, Matrix{Float64}}

(T_Weib,δ;+) ~ 1

Distr:
Weibull{Float64}(α=1.9519886643909778, θ=4.967038229041934)

Coefficients:
  (Scale)  (Intercept)
 0.512298      1.60282
ParametricAFT{Weibull}

Distr:
Weibull{Float64}(α=1.9519886643909778, θ=4.967038229041934)

Coefficients:
  (Scale)  (Intercept)
 0.512298      1.60282
ParametricSurvival.jl: Error During Test at /home/pkgeval/.julia/packages/SurvivalAnalysis/kuB8k/test/runtests.jl:14
  Test threw exception
  Expression: include(f)
  LoadError: REvalError: Error in library(survival) : there is no package called ‘survival’
  in expression starting at /home/pkgeval/.julia/packages/SurvivalAnalysis/kuB8k/test/ParametricSurvival.jl:49
Test Summary:                          | Pass  Error  Total     Time
ParametricSurvival.jl                  |   13      1     14  2m50.4s
  Check correct class                  |    8             8     0.1s
  Check printing                       |    2             2    11.4s
  Check parameters against theoretical |    3             3     0.1s
ERROR: LoadError: Some tests did not pass: 13 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/SurvivalAnalysis/kuB8k/test/runtests.jl:12

Testing failed after 197.71s

ERROR: LoadError: Package SurvivalAnalysis errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 490.97s: package tests unexpectedly errored