Package evaluation of Stheno on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:28:12.184 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.16s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 27.55s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_5Oifcj/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.28 ⌅ [e88e6eb3] Zygote v0.6.76 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5Oifcj/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [69de0a69] Parsers v2.8.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.28 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.76 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.35+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Documenter... 12420.7 ms ✓ Documenter 1 dependency successfully precompiled in 13 seconds. 26 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 27m30.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1671s / 98.8% 25.6GiB / 99.4% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 1119s 67.8% 1119s 17.5GiB 69.0% 17.5GiB addition 1 640s 38.8% 640s 10.7GiB 42.3% 10.7GiB Standardised Tests (correlated sum) 1 260s 15.7% 260s 6.01GiB 23.6% 6.01GiB adj_ad 9 14.6s 0.9% 1.62s 380MiB 1.5% 42.2MiB adj_fd 9 4.33s 0.3% 481ms 109MiB 0.4% 12.1MiB Correlated GPs 1 199s 12.1% 199s 247MiB 0.9% 247MiB Consistency Tests 1 75.2s 4.6% 75.2s 106MiB 0.4% 106MiB Standardised Tests (independent sum) 1 178s 10.8% 178s 4.46GiB 17.5% 4.46GiB adj_ad 9 23.0s 1.4% 2.56s 511MiB 2.0% 56.7MiB adj_fd 9 6.19s 0.4% 688ms 82.5MiB 0.3% 9.17MiB Verify mean / kernel numerically 1 3.40s 0.2% 3.40s 38.8MiB 0.1% 38.8MiB Consistency Tests 1 1.65s 0.1% 1.65s 14.2MiB 0.1% 14.2MiB product 1 237s 14.4% 237s 3.12GiB 12.3% 3.12GiB multiply by function 1 165s 10.0% 165s 1.75GiB 6.9% 1.75GiB Diff Tests 1 67.5s 4.1% 67.5s 1.27GiB 5.0% 1.27GiB adj_ad 9 22.8s 1.4% 2.53s 754MiB 2.9% 83.8MiB adj_fd 9 6.11s 0.4% 679ms 77.6MiB 0.3% 8.62MiB Consistency Tests 1 12.6s 0.8% 12.6s 86.0MiB 0.3% 86.0MiB multiply by constant 1 72.7s 4.4% 72.7s 1.38GiB 5.4% 1.38GiB Diff Tests 1 49.4s 3.0% 49.4s 1.32GiB 5.2% 1.32GiB adj_ad 9 13.3s 0.8% 1.48s 201MiB 0.8% 22.4MiB adj_fd 9 5.48s 0.3% 609ms 76.8MiB 0.3% 8.53MiB Consistency Tests 1 5.54s 0.3% 5.54s 21.2MiB 0.1% 21.2MiB GP mul errors 1 12.7ms 0.0% 12.7ms 36.1KiB 0.0% 36.1KiB compose 1 73.5s 4.5% 73.5s 1.75GiB 6.9% 1.75GiB general 1 49.5s 3.0% 49.5s 1.22GiB 4.8% 1.22GiB Diff Tests 1 42.7s 2.6% 42.7s 1.16GiB 4.6% 1.16GiB adj_ad 9 10.8s 0.7% 1.20s 565MiB 2.2% 62.7MiB adj_fd 9 4.99s 0.3% 554ms 85.2MiB 0.3% 9.46MiB Consistency Tests 1 5.31s 0.3% 5.31s 39.3MiB 0.2% 39.3MiB Stretch 1 15.4s 0.9% 15.4s 456MiB 1.8% 456MiB scalar stretch 1 14.7s 0.9% 14.7s 445MiB 1.7% 445MiB scalar input 1 13.4s 0.8% 13.4s 442MiB 1.7% 442MiB adj_fd 9 4.25s 0.3% 472ms 74.4MiB 0.3% 8.26MiB adj_ad 9 846ms 0.1% 94.0ms 30.9MiB 0.1% 3.44MiB vector input 1 1.27s 0.1% 1.27s 3.32MiB 0.0% 3.32MiB Vector stretch 1 519ms 0.0% 519ms 8.04MiB 0.0% 8.04MiB Matrix stretch 1 130ms 0.0% 130ms 2.84MiB 0.0% 2.84MiB Shift 1 5.57s 0.3% 5.57s 35.7MiB 0.1% 35.7MiB Shift{Vector{Float64}} 1 3.46s 0.2% 3.46s 12.7MiB 0.0% 12.7MiB Shift{Float64} 1 2.12s 0.1% 2.12s 23.0MiB 0.1% 23.0MiB Select 1 1.87s 0.1% 1.87s 29.5MiB 0.1% 29.5MiB evaluation 1 869ms 0.1% 869ms 18.5MiB 0.1% 18.5MiB idx isa Vector 1 537ms 0.0% 537ms 7.01MiB 0.0% 7.01MiB idx isa Integer 1 459ms 0.0% 459ms 4.06MiB 0.0% 4.06MiB Periodic 1 1.22s 0.1% 1.22s 28.1MiB 0.1% 28.1MiB cross 1 29.3s 1.8% 29.3s 1.17GiB 4.6% 1.17GiB block arrays 1 17.1s 1.0% 17.1s 794MiB 3.0% 794MiB Stheno._collect ∘ _mortar 1 13.8s 0.8% 13.8s 661MiB 2.5% 661MiB BlockVector 1 7.80s 0.5% 7.80s 345MiB 1.3% 345MiB adj_ad 1 1.33s 0.1% 1.33s 81.9MiB 0.3% 81.9MiB adj_fd 1 674ms 0.0% 674ms 12.8MiB 0.0% 12.8MiB BlockMatrix 1 6.00s 0.4% 6.00s 316MiB 1.2% 316MiB adj_fd 1 741ms 0.0% 741ms 115MiB 0.4% 115MiB adj_ad 1 596ms 0.0% 596ms 33.2MiB 0.1% 33.2MiB fdm stuff 1 3.26s 0.2% 3.26s 133MiB 0.5% 133MiB Correctness tests 1 8.16s 0.5% 8.16s 354MiB 1.4% 354MiB Standardised Tests 1 4.13s 0.3% 4.13s 51.1MiB 0.2% 51.1MiB gp 1 237s 14.4% 237s 4.18GiB 16.5% 4.18GiB adj_ad 2 32.0s 1.9% 16.0s 737MiB 2.8% 369MiB sparse gp 1 24.9s 1.5% 24.9s 694MiB 2.7% 694MiB SparseFiniteGP inference 1 17.8s 1.1% 17.8s 519MiB 2.0% 519MiB SparseFiniteGP methods 1 6.49s 0.4% 6.49s 168MiB 0.6% 168MiB SparseFiniteGP Constructors 1 396ms 0.0% 396ms 3.73MiB 0.0% 3.73MiB gp 1 22.0s 1.3% 22.0s 236MiB 0.9% 236MiB GP 1 21.7s 1.3% 21.7s 233MiB 0.9% 233MiB independent GPs 1 311ms 0.0% 311ms 2.40MiB 0.0% 2.40MiB wrapped AbstractGP 1 12.3ms 0.0% 12.3ms 260KiB 0.0% 260KiB adj_fd 2 4.74s 0.3% 2.37s 93.4MiB 0.4% 46.7MiB derived_gp 1 155μs 0.0% 155μs 1.69KiB 0.0% 1.69KiB gaussian_process_probabilistic_programme 1 209s 12.7% 209s 2.09GiB 8.2% 2.09GiB External Consistency 1 52.6s 3.2% 52.6s 82.8MiB 0.3% 82.8MiB Zygote 1 38.6s 2.3% 38.6s 841MiB 3.2% 841MiB nested gppp 1 15.9s 1.0% 15.9s 81.7MiB 0.3% 81.7MiB split 1 678ms 0.0% 678ms 11.1MiB 0.0% 11.1MiB gppp macro 1 59.2ms 0.0% 59.2ms 511KiB 0.0% 511KiB doctests 1 74.9s 4.5% 74.9s 1.35GiB 5.3% 1.35GiB BlockData 1 9.70s 0.6% 9.70s 269MiB 1.0% 269MiB vcat(::GPPPInput...) 1 2.11s 0.1% 2.11s 88.6MiB 0.3% 88.6MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1699.16s PkgEval succeeded after 1755.13s