Package evaluation of Stan on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T21:09:28.228


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.08s


################################################################################
# Installation
#

Installing Stan...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [682df890] + Stan v10.8.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [80f14c24] + AbstractMCMC v5.6.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [4fba245c] + ArrayInterface v7.18.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [94b1ba4f] + AxisKeys v0.2.15
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [944b1d66] + CodecZlib v0.7.8
  [861a8166] + Combinatorics v1.0.2
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [5224ae11] + CompatHelperLocal v0.1.27
  [a33af91c] + CompositionsBase v0.1.2
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
⌅ [0703355e] + DimensionalData v0.27.9
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
  [411431e0] + Extents v0.1.5
  [7a1cc6ca] + FFTW v1.8.1
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [c145ed77] + GenericSchur v0.5.4
  [3e5b6fbb] + HostCPUFeatures v0.1.17
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [b5cf5a8d] + InferenceObjects v0.4.9
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] + InlineStrings v1.4.3
  [85a1e053] + Interfaces v0.3.2
  [a98d9a8b] + Interpolations v0.15.1
  [8197267c] + IntervalSets v0.7.10
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.2
  [5ab0869b] + KernelDensity v0.6.9
  [b964fa9f] + LaTeXStrings v1.4.0
  [10f19ff3] + LayoutPointers v0.1.17
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] + LogDensityProblems v2.1.2
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [c7f686f2] + MCMCChains v6.0.7
  [be115224] + MCMCDiagnosticTools v0.3.14
  [e80e1ace] + MLJModelInterface v1.11.0
  [1914dd2f] + MacroTools v0.5.15
  [d125e4d3] + ManualMemory v0.1.8
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [0987c9cc] + MonteCarloMeasurements v1.4.5
  [86f7a689] + NamedArrays v0.10.3
  [356022a1] + NamedDims v1.2.2
  [d9ec5142] + NamedTupleTools v0.14.3
  [c020b1a1] + NaturalSort v1.0.0
  [6fe1bfb0] + OffsetArrays v1.16.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.1
  [2dfb63ee] + PooledArrays v1.4.3
  [1c4bc282] + PosteriorDB v0.5.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.4
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [30f210dd] + ScientificTypesBase v3.0.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [171d559e] + SplittablesBase v0.1.15
  [682df890] + Stan v10.8.1
  [d0ee94f6] + StanBase v4.12.2
  [fb13fc95] + StanDiagnose v4.5.2
  [fbd8da12] + StanOptimize v4.4.3
  [e4723793] + StanQuap v4.4.1
  [c1514b29] + StanSample v7.10.2
  [6ede68ce] + StanVariational v4.5.1
  [aedffcd0] + Static v1.2.0
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.4.0
  [892a3eda] + StringManipulation v0.4.1
  [856f2bd8] + StructTypes v1.11.0
  [ab02a1b2] + TableOperations v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [5d786b92] + TerminalLoggers v0.1.7
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [3a884ed6] + UnPack v1.0.2
  [3d5dd08c] + VectorizationBase v0.21.71
  [ea10d353] + WeakRefStrings v1.4.2
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [a5390f91] + ZipFile v0.10.1
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [856f044c] + MKL_jll v2025.0.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.74s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 171.28s


################################################################################
# Testing
#

     Testing Stan
      Status `/tmp/jl_tezkeA/Project.toml`
  [94b1ba4f] AxisKeys v0.2.15
  [336ed68f] CSV v0.10.15
  [5224ae11] CompatHelperLocal v0.1.27
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
⌅ [0703355e] DimensionalData v0.27.9
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [b5cf5a8d] InferenceObjects v0.4.9
  [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.2
  [c7f686f2] MCMCChains v6.0.7
  [0987c9cc] MonteCarloMeasurements v1.4.5
  [86f7a689] NamedArrays v0.10.3
  [d9ec5142] NamedTupleTools v0.14.3
  [bac558e1] OrderedCollections v1.8.0
  [1c4bc282] PosteriorDB v0.5.3
  [682df890] Stan v10.8.1
  [d0ee94f6] StanBase v4.12.2
  [fb13fc95] StanDiagnose v4.5.2
  [fbd8da12] StanOptimize v4.4.3
  [e4723793] StanQuap v4.4.1
  [c1514b29] StanSample v7.10.2
  [6ede68ce] StanVariational v4.5.1
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [bd369af6] Tables v1.12.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_tezkeA/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [80f14c24] AbstractMCMC v5.6.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [4fba245c] ArrayInterface v7.18.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [94b1ba4f] AxisKeys v0.2.15
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] CPUSummary v0.2.6
  [336ed68f] CSV v0.10.15
  [d360d2e6] ChainRulesCore v1.25.1
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.0.2
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [5224ae11] CompatHelperLocal v0.1.27
  [a33af91c] CompositionsBase v0.1.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.5.8
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [8bb1440f] DelimitedFiles v1.9.1
⌅ [0703355e] DimensionalData v0.27.9
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [411431e0] Extents v0.1.5
  [7a1cc6ca] FFTW v1.8.1
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [c145ed77] GenericSchur v0.5.4
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.28
  [615f187c] IfElse v0.1.1
  [b5cf5a8d] InferenceObjects v0.4.9
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.3
  [85a1e053] Interfaces v0.3.2
  [a98d9a8b] Interpolations v0.15.1
  [8197267c] IntervalSets v0.7.10
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.2
  [5ab0869b] KernelDensity v0.6.9
  [b964fa9f] LaTeXStrings v1.4.0
  [10f19ff3] LayoutPointers v0.1.17
  [1d6d02ad] LeftChildRightSiblingTrees v0.2.0
  [6fdf6af0] LogDensityProblems v2.1.2
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [c7f686f2] MCMCChains v6.0.7
  [be115224] MCMCDiagnosticTools v0.3.14
  [e80e1ace] MLJModelInterface v1.11.0
  [1914dd2f] MacroTools v0.5.15
  [d125e4d3] ManualMemory v0.1.8
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [0987c9cc] MonteCarloMeasurements v1.4.5
  [86f7a689] NamedArrays v0.10.3
  [356022a1] NamedDims v1.2.2
  [d9ec5142] NamedTupleTools v0.14.3
  [c020b1a1] NaturalSort v1.0.0
  [6fe1bfb0] OffsetArrays v1.16.0
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [2dfb63ee] PooledArrays v1.4.3
  [1c4bc282] PosteriorDB v0.5.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [30f210dd] ScientificTypesBase v3.0.0
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [171d559e] SplittablesBase v0.1.15
  [682df890] Stan v10.8.1
  [d0ee94f6] StanBase v4.12.2
  [fb13fc95] StanDiagnose v4.5.2
  [fbd8da12] StanOptimize v4.4.3
  [e4723793] StanQuap v4.4.1
  [c1514b29] StanSample v7.10.2
  [6ede68ce] StanVariational v4.5.1
  [aedffcd0] Static v1.2.0
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [64bff920] StatisticalTraits v3.4.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [892a3eda] StringManipulation v0.4.1
  [856f2bd8] StructTypes v1.11.0
  [ab02a1b2] TableOperations v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [5d786b92] TerminalLoggers v0.1.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [28d57a85] Transducers v0.4.84
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.71
  [ea10d353] WeakRefStrings v1.4.2
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
  [a5390f91] ZipFile v0.10.1
  [f5851436] FFTW_jll v3.3.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [856f044c] MKL_jll v2025.0.1+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: Project has issues with [compat]
│   project = "/home/pkgeval/.julia/packages/Stan/RwaQ6/Project.toml"
└ @ CompatHelperLocal ~/.julia/packages/CompatHelperLocal/4LI7I/src/CompatHelperLocal.jl:133
┌ Info: [compat] outdated
│   name = "DimensionalData"
│   compat = (val = VersionSpec("[0.24 - 0.25, 0.27]"), str = "0.24, 0.25, 0.27")
└   latest = v"0.29.15"

Suggested content:
[compat]
AxisKeys = "0.2"
CSV = "0.10"
CompatHelperLocal = "0.1"
DataFrames = "1.4"
DataStructures = "0.18.13"
DimensionalData = "0.24, 0.25, 0.27, 0.29.15"
Distributions = "0.25"
DocStringExtensions = "0.9"
InferenceObjects = "0.3, 0.4"
JSON = "0.21"
JSON3 = "1.12"
MCMCChains = "5.6, 6"
MonteCarloMeasurements = "1.0"
NamedArrays = "0.10"
NamedTupleTools = "0.14"
OrderedCollections = "1.4.1"
PosteriorDB = "0.4, 0.5"
StanBase = "4"
StanDiagnose = "4.4"
StanOptimize = "4"
StanQuap = "4"
StanSample = "7, 8"
StanVariational = "4"
Statistics = "1"
StatsBase = "0.33, 0.34"
StatsFuns = "1"
Tables = "1.10"
julia = "1"



CMDSTAN or JULIA_CMDSTAN_HOME not set. Skipping tests
     Testing Stan tests passed 

Testing completed after 24.63s

PkgEval succeeded after 227.55s