Package evaluation of SmallZarrGroups on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T11:16:21.362 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.64s ################################################################################ # Installation # Installing SmallZarrGroups... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [d423b6e5] + SmallZarrGroups v0.8.8 Updating `~/.julia/environments/v1.11/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [dce04be8] + ArgCheck v2.5.0 [0b6fb165] + ChunkCodecCore v0.4.2 [c6a955be] + ChunkCodecLibBlosc v0.1.2 [4c0bbee4] + ChunkCodecLibZlib v0.1.2 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [0c81fc1b] + InputBuffers v1.0.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [d423b6e5] + SmallZarrGroups v0.8.8 [09ab397b] + StructArrays v0.7.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [49080126] + ZipArchives v2.4.1 [0b7ba130] + Blosc_jll v1.21.7+0 [5ced341a] + Lz4_jll v1.10.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [83775a58] + Zlib_jll v1.2.13+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.16s ################################################################################ # Testing # Testing SmallZarrGroups Status `/tmp/jl_RLrjkL/Project.toml` [992eb4ea] CondaPkg v0.2.27 [864edb3b] DataStructures v0.18.22 [0f8b85d8] JSON3 v1.14.2 [6099a3de] PythonCall v0.9.24 [d423b6e5] SmallZarrGroups v0.8.8 [90137ffa] StaticArrays v1.9.13 [09ab397b] StructArrays v0.7.1 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_RLrjkL/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [dce04be8] ArgCheck v2.5.0 [0b6fb165] ChunkCodecCore v0.4.2 [c6a955be] ChunkCodecLibBlosc v0.1.2 [4c0bbee4] ChunkCodecLibZlib v0.1.2 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.27 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [0c81fc1b] InputBuffers v1.0.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [d423b6e5] SmallZarrGroups v0.8.8 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [09ab397b] StructArrays v0.7.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [e17b2a0c] UnsafePointers v1.0.0 [49080126] ZipArchives v2.4.1 [0b7ba130] Blosc_jll v1.21.7+0 [5ced341a] Lz4_jll v1.10.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling SmallZarrGroups... 13025.5 ms ✓ SmallZarrGroups 1 dependency successfully precompiled in 14 seconds. 42 already precompiled. Test Summary: | Pass Total Time basic type parsing | 3193 3193 1.6s Test Summary: | Pass Total Time parsing fill value | 28 28 0.9s Test Summary: | Pass Total Time basic type writing | 17 17 0.1s Test Summary: | Pass Total Time create empty ZGroup | 1 1 1.3s Test Summary: | Pass Total Time copy data to a group | 28 28 9.9s Test Summary: | Pass Total Time read data from a group with collect | 4 4 1.2s Test Summary: | Pass Total Time data in a group can be treated as an array | 4 4 7.5s Test Summary: | Pass Total Time add metadata to groups or arrays with attrs | 5 5 0.2s Test Summary: | Pass Total Time saving and loading a directory | 8 8 33.2s Test Summary: | Pass Total Time saving and loading a zip file | 8 8 6.6s Test Summary: | Pass Total Time loading with predicate | 5 5 1.0s Test Summary: | Pass Total Time saving and loading an in memory zip file | 7 7 3.8s Test Summary: | Pass Total Time deprecated saving and loading a zip file | 8 8 0.4s Test Summary: | Pass Total Time deprecated saving and loading an in memory zip file | 7 7 0.1s Precompiling PythonCall... 3550.3 ms ✓ micromamba_jll 3384.5 ms ✓ pixi_jll 2991.0 ms ✓ MicroMamba 5255.6 ms ✓ CondaPkg 23542.2 ms ✓ PythonCall 5 dependencies successfully precompiled in 39 seconds. 45 already precompiled. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Resolving changes + libstdcxx-ng + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_RLrjkL/.CondaPkg ✔ Created /tmp/jl_RLrjkL/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_RLrjkL/.CondaPkg/pixi.toml │ [dependencies] │ libstdcxx-ng = ">=3.4,<13.0" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_RLrjkL/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: Python: ModuleNotFoundError: No module named 'zarr' Python stacktrace: none Stacktrace: [1] pythrow() @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:92 [2] errcheck @ ~/.julia/packages/PythonCall/WMWY0/src/Core/err.jl:10 [inlined] [3] pyimport(m::String) @ PythonCall.Core ~/.julia/packages/PythonCall/WMWY0/src/Core/builtins.jl:1561 [4] top-level scope @ ~/.julia/packages/SmallZarrGroups/YAaEH/test/test_read-write-fixture.jl:8 [5] include(fname::String) @ Main ./sysimg.jl:38 [6] top-level scope @ ~/.julia/packages/SmallZarrGroups/YAaEH/test/runtests.jl:9 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/SmallZarrGroups/YAaEH/test/test_read-write-fixture.jl:8 in expression starting at /home/pkgeval/.julia/packages/SmallZarrGroups/YAaEH/test/runtests.jl:9 Testing failed after 179.14s ERROR: LoadError: Package SmallZarrGroups errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 280.29s: package tests unexpectedly errored