Package evaluation of SampleChainsDynamicHMC on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T20:25:31.003


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.41s


################################################################################
# Installation
#

Installing SampleChainsDynamicHMC...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [6d9fd711] + SampleChainsDynamicHMC v0.3.5
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [dce04be8] + ArgCheck v2.5.0
⌅ [4c555306] + ArrayLayouts v0.8.19
⌅ [65a8f2f4] + ArraysOfArrays v0.5.0
⌅ [198e06fe] + BangBang v0.3.40
  [49dc2e85] + Calculus v0.5.2
  [d360d2e6] + ChainRulesCore v1.25.1
  [9e997f8a] + ChangesOfVariables v0.1.9
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.4
⌃ [bbc10e6e] + DynamicHMC v3.3.0
  [fdbdab4c] + ElasticArrays v1.2.12
⌅ [1a297f60] + FillArrays v0.13.11
⌅ [f6369f11] + ForwardDiff v0.10.38
⌅ [46192b85] + GPUArraysCore v0.1.6
  [6b9d7cbe] + GeneralizedGenerated v0.3.3
  [615f187c] + IfElse v0.1.1
  [22cec73e] + InitialValues v0.3.1
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b14d175d] + JuliaVariables v0.2.4
⌅ [5078a376] + LazyArrays v0.22.18
  [1fad7336] + LazyStack v0.1.3
⌅ [6fdf6af0] + LogDensityProblems v0.11.5
  [2ab3a3ac] + LogExpFunctions v0.3.29
⌅ [6e857e4b] + MCMCDiagnostics v0.3.0
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.15
  [dbb5928d] + MappedArrays v0.4.2
⌅ [a3b82374] + MatrixFactorizations v0.9.6
  [eff96d63] + Measurements v2.12.0
  [e1d29d7a] + Missings v1.2.0
  [77ba4419] + NaNMath v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [d9ec5142] + NamedTupleTools v0.14.3
⌃ [a734d2a7] + NestedTuples v0.3.10
  [bac558e1] + OrderedCollections v1.8.0
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [d96e819e] + Parameters v0.12.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [92933f4c] + ProgressMeter v1.10.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [754583d1] + SampleChains v0.5.1
  [6d9fd711] + SampleChainsDynamicHMC v0.3.5
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
⌅ [aedffcd0] + Static v0.6.6
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [5e0ebb24] + Strided v2.3.0
  [4db3bf67] + StridedViews v0.4.1
⌅ [09ab397b] + StructArrays v0.6.18
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [02d47bb6] + TensorCast v0.4.8
⌅ [84d833dd] + TransformVariables v0.6.4
  [24ddb15e] + TransmuteDims v0.1.16
  [9d95972d] + TupleTools v1.6.0
⌅ [615932cf] + TupleVectors v0.1.5
  [3a884ed6] + UnPack v1.0.2
  [c4a57d5a] + UnsafeArrays v1.0.7
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 5.7s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 179.43s


################################################################################
# Testing
#

     Testing SampleChainsDynamicHMC
      Status `/tmp/jl_A1eNan/Project.toml`
  [2569d6c7] ConcreteStructs v0.2.3
⌃ [bbc10e6e] DynamicHMC v3.3.0
  [fdbdab4c] ElasticArrays v1.2.12
⌅ [6fdf6af0] LogDensityProblems v0.11.5
  [dbb5928d] MappedArrays v0.4.2
⌃ [a734d2a7] NestedTuples v0.3.10
  [189a3867] Reexport v1.2.2
  [37e2e3b7] ReverseDiff v1.16.1
  [754583d1] SampleChains v0.5.1
  [6d9fd711] SampleChainsDynamicHMC v0.3.5
⌅ [09ab397b] StructArrays v0.6.18
⌅ [84d833dd] TransformVariables v0.6.4
⌅ [615932cf] TupleVectors v0.1.5
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_A1eNan/Manifest.toml`
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [dce04be8] ArgCheck v2.5.0
⌅ [4c555306] ArrayLayouts v0.8.19
⌅ [65a8f2f4] ArraysOfArrays v0.5.0
⌅ [198e06fe] BangBang v0.3.40
  [49dc2e85] Calculus v0.5.2
  [d360d2e6] ChainRulesCore v1.25.1
  [9e997f8a] ChangesOfVariables v0.1.9
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [187b0558] ConstructionBase v1.5.8
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.4
⌃ [bbc10e6e] DynamicHMC v3.3.0
  [fdbdab4c] ElasticArrays v1.2.12
⌅ [1a297f60] FillArrays v0.13.11
⌅ [f6369f11] ForwardDiff v0.10.38
  [069b7b12] FunctionWrappers v1.1.3
⌅ [46192b85] GPUArraysCore v0.1.6
  [6b9d7cbe] GeneralizedGenerated v0.3.3
  [615f187c] IfElse v0.1.1
  [22cec73e] InitialValues v0.3.1
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b14d175d] JuliaVariables v0.2.4
⌅ [5078a376] LazyArrays v0.22.18
  [1fad7336] LazyStack v0.1.3
⌅ [6fdf6af0] LogDensityProblems v0.11.5
  [2ab3a3ac] LogExpFunctions v0.3.29
⌅ [6e857e4b] MCMCDiagnostics v0.3.0
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.15
  [dbb5928d] MappedArrays v0.4.2
⌅ [a3b82374] MatrixFactorizations v0.9.6
  [eff96d63] Measurements v2.12.0
  [e1d29d7a] Missings v1.2.0
  [77ba4419] NaNMath v1.1.3
  [71a1bf82] NameResolution v0.1.5
  [d9ec5142] NamedTupleTools v0.14.3
⌃ [a734d2a7] NestedTuples v0.3.10
  [bac558e1] OrderedCollections v1.8.0
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [8162dcfd] PrettyPrint v0.2.0
  [92933f4c] ProgressMeter v1.10.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [37e2e3b7] ReverseDiff v1.16.1
  [754583d1] SampleChains v0.5.1
  [6d9fd711] SampleChainsDynamicHMC v0.3.5
  [efcf1570] Setfield v1.1.2
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
⌅ [aedffcd0] Static v0.6.6
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
⌅ [2913bbd2] StatsBase v0.33.21
  [5e0ebb24] Strided v2.3.0
  [4db3bf67] StridedViews v0.4.1
⌅ [09ab397b] StructArrays v0.6.18
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [02d47bb6] TensorCast v0.4.8
⌅ [84d833dd] TransformVariables v0.6.4
  [24ddb15e] TransmuteDims v0.1.16
  [9d95972d] TupleTools v1.6.0
⌅ [615932cf] TupleVectors v0.1.5
  [3a884ed6] UnPack v1.0.2
  [c4a57d5a] UnsafeArrays v1.0.7
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling ReverseDiff...
  31551.5 ms  ✓ ReverseDiff
  1 dependency successfully precompiled in 33 seconds. 33 already precompiled.
┌ Info: found initial stepsize
└   ϵ = 0.438
┌ Info: Starting MCMC
│   total_steps = 75
└   tuning = "stepsize"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 4.7e-5
│   estimated_seconds_left = 0.0035
└   ϵ = 0.438
┌ Info: Starting MCMC
│   total_steps = 25
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 8.5e-5
│   estimated_seconds_left = 0.0021
└   ϵ = 0.269
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.5595248108778894, 0.5048624750782535]
┌ Info: Starting MCMC
│   total_steps = 50
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 0.0002
│   estimated_seconds_left = 0.0096
└   ϵ = 0.232
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.3106259926659396, 0.8375461010860539]
┌ Info: Starting MCMC
│   total_steps = 100
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 8.1e-5
│   estimated_seconds_left = 0.0081
└   ϵ = 0.251
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.8647549213213586, 1.0255923231156405]
┌ Info: Starting MCMC
│   total_steps = 200
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 9.5e-5
│   estimated_seconds_left = 0.019
└   ϵ = 0.432
┌ Info: MCMC progress
│   step = 101
│   seconds_per_step = 0.00026
│   estimated_seconds_left = 0.026
└   ϵ = 0.171
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.8008521994408537, 0.9246891701304668]
┌ Info: Starting MCMC
│   total_steps = 400
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 0.00017
│   estimated_seconds_left = 0.069
└   ϵ = 0.187
┌ Info: MCMC progress
│   step = 101
│   seconds_per_step = 0.00026
│   estimated_seconds_left = 0.078
└   ϵ = 0.144
┌ Info: MCMC progress
│   step = 201
│   seconds_per_step = 0.00015
│   estimated_seconds_left = 0.03
└   ϵ = 0.202
┌ Info: MCMC progress
│   step = 301
│   seconds_per_step = 0.00017
│   estimated_seconds_left = 0.017
└   ϵ = 0.214
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.9599959428956153, 0.8028331466711084]
┌ Info: Starting MCMC
│   total_steps = 800
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 9.4e-5
│   estimated_seconds_left = 0.075
└   ϵ = 0.273
┌ Info: MCMC progress
│   step = 101
│   seconds_per_step = 0.00021
│   estimated_seconds_left = 0.15
└   ϵ = 0.154
┌ Info: MCMC progress
│   step = 201
│   seconds_per_step = 0.00025
│   estimated_seconds_left = 0.15
└   ϵ = 0.155
┌ Info: MCMC progress
│   step = 301
│   seconds_per_step = 0.00017
│   estimated_seconds_left = 0.086
└   ϵ = 0.135
┌ Info: MCMC progress
│   step = 401
│   seconds_per_step = 0.00023
│   estimated_seconds_left = 0.092
└   ϵ = 0.212
┌ Info: MCMC progress
│   step = 501
│   seconds_per_step = 0.00015
│   estimated_seconds_left = 0.044
└   ϵ = 0.302
┌ Info: MCMC progress
│   step = 601
│   seconds_per_step = 0.00022
│   estimated_seconds_left = 0.043
└   ϵ = 0.232
┌ Info: MCMC progress
│   step = 701
│   seconds_per_step = 0.00013
│   estimated_seconds_left = 0.013
└   ϵ = 0.152
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [1.0020615199797733, 0.950120584551062]
┌ Info: Starting MCMC
│   total_steps = 1600
└   tuning = "stepsize and Symmetric metric"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 3.8e-5
│   estimated_seconds_left = 0.06
└   ϵ = 0.255
┌ Info: MCMC progress
│   step = 101
│   seconds_per_step = 0.00033
│   estimated_seconds_left = 0.49
└   ϵ = 0.165
┌ Info: MCMC progress
│   step = 201
│   seconds_per_step = 0.00019
│   estimated_seconds_left = 0.27
└   ϵ = 0.247
┌ Info: MCMC progress
│   step = 301
│   seconds_per_step = 0.00038
│   estimated_seconds_left = 0.49
└   ϵ = 0.311
┌ Info: MCMC progress
│   step = 401
│   seconds_per_step = 0.00019
│   estimated_seconds_left = 0.22
└   ϵ = 0.276
┌ Info: MCMC progress
│   step = 501
│   seconds_per_step = 0.00019
│   estimated_seconds_left = 0.2
└   ϵ = 0.455
┌ Info: MCMC progress
│   step = 601
│   seconds_per_step = 0.00016
│   estimated_seconds_left = 0.16
└   ϵ = 0.191
┌ Info: MCMC progress
│   step = 701
│   seconds_per_step = 0.00016
│   estimated_seconds_left = 0.14
└   ϵ = 0.363
┌ Info: MCMC progress
│   step = 801
│   seconds_per_step = 0.00023
│   estimated_seconds_left = 0.18
└   ϵ = 0.18
┌ Info: MCMC progress
│   step = 901
│   seconds_per_step = 0.00016
│   estimated_seconds_left = 0.11
└   ϵ = 0.236
┌ Info: MCMC progress
│   step = 1001
│   seconds_per_step = 0.00018
│   estimated_seconds_left = 0.11
└   ϵ = 0.215
┌ Info: MCMC progress
│   step = 1101
│   seconds_per_step = 0.00013
│   estimated_seconds_left = 0.063
└   ϵ = 0.216
┌ Info: MCMC progress
│   step = 1201
│   seconds_per_step = 0.00015
│   estimated_seconds_left = 0.06
└   ϵ = 0.223
┌ Info: MCMC progress
│   step = 1301
│   seconds_per_step = 0.00015
│   estimated_seconds_left = 0.046
└   ϵ = 0.279
┌ Info: MCMC progress
│   step = 1401
│   seconds_per_step = 0.00014
│   estimated_seconds_left = 0.029
└   ϵ = 0.368
┌ Info: MCMC progress
│   step = 1501
│   seconds_per_step = 0.00026
│   estimated_seconds_left = 0.026
└   ϵ = 0.239
┌ Info: adaptation finished
└   adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [1.1543049801523213, 0.935613106498104]
┌ Info: Starting MCMC
│   total_steps = 50
└   tuning = "stepsize"
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 0.00018
│   estimated_seconds_left = 0.0086
└   ϵ = 0.21
┌ Info: Starting MCMC
└   total_steps = 0
┌ Info: Starting MCMC
└   total_steps = 9
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 0.00011
└   estimated_seconds_left = 0.00087
┌ Info: Starting MCMC
└   total_steps = 90
┌ Info: MCMC progress
│   step = 1
│   seconds_per_step = 0.00014
└   estimated_seconds_left = 0.013
Test Summary:             | Pass  Total     Time
SampleChainsDynamicHMC.jl |   16     16  1m27.1s
     Testing SampleChainsDynamicHMC tests passed 

Testing completed after 100.86s

PkgEval succeeded after 303.64s