Package evaluation of RecurrenceAnalysis on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:29:36.762 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.32s ################################################################################ # Installation # Installing RecurrenceAnalysis... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [639c3291] + RecurrenceAnalysis v2.1.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [34da2185] + Compat v4.16.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.12.1 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [299715c1] + MarchingCubes v0.1.11 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [639c3291] + RecurrenceAnalysis v2.1.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [40b095a5] + StateSpaceSets v2.4.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [62fd8b95] + TensorCore v0.1.1 [b8865327] + UnicodePlots v3.7.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 20.31s ################################################################################ # Testing # Testing RecurrenceAnalysis Status `/tmp/jl_JiK50a/Project.toml` [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [86223c79] Graphs v1.12.1 [639c3291] RecurrenceAnalysis v2.1.1 [10745b16] Statistics v1.11.1 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JiK50a/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [86223c79] Graphs v1.12.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [299715c1] MarchingCubes v0.1.11 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 [645ca80c] Neighborhood v0.2.4 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [639c3291] RecurrenceAnalysis v2.1.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [40b095a5] StateSpaceSets v2.4.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [62fd8b95] TensorCore v0.1.1 [b8865327] UnicodePlots v3.7.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... running test file rmatrix_analytic.jl Rmatrix analytic: Error During Test at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 Got exception outside of a @test LoadError: MethodError: Cannot `convert` an object of type Float64 to an object of type SVector{2, Float64} The function `convert` exists, but no method is defined for this combination of argument types. Closest candidates are: (::Type{SA})(::Any...) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/LSPcF/src/convert.jl:173 convert(::Type{T}, !Matched::T) where T @ Base Base.jl:126 convert(::Type{SA}, !Matched::Tuple) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/LSPcF/src/convert.jl:192 ... Stacktrace: [1] setindex! @ ./array.jl:994 [inlined] [2] _distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, ::Val{false}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:103 [3] distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, parallel::Bool) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [4] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/rmatrix_analytic.jl:16 [5] include @ ./sysimg.jl:38 [inlined] [6] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [8] testfile(file::String, testname::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [9] testfile(file::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:5 [10] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [13] include(fname::String) @ Main ./sysimg.jl:38 [14] top-level scope @ none:6 [15] eval @ ./boot.jl:430 [inlined] [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [17] _start() @ Base ./client.jl:531 in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/rmatrix_analytic.jl:16 running test file rqa_rna_analytic.jl ┌ Warning: Infinite path length detected for vertex 1 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 2 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 3 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 4 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 5 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 6 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 7 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 8 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 9 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 10 └ @ Graphs ~/.julia/packages/Graphs/OIRln/src/distance.jl:78 running test file skeletontest.jl Precompiling DelayEmbeddings... 5581.1 ms ✓ SpecialFunctions 2318.8 ms ✓ HypergeometricFunctions 3457.6 ms ✓ StatsFuns 9686.8 ms ✓ Distributions 3721.9 ms ✓ Distributions → DistributionsTestExt 5886.2 ms ✓ DelayEmbeddings 6 dependencies successfully precompiled in 34 seconds. 53 already precompiled. Precompiling SpecialFunctionsExt... 1643.9 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 20 already precompiled. running test file windowtest.jl Windowtest: Error During Test at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 Got exception outside of a @test LoadError: MethodError: Cannot `convert` an object of type Float64 to an object of type SVector{2, Float64} The function `convert` exists, but no method is defined for this combination of argument types. Closest candidates are: (::Type{SA})(::Any...) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/LSPcF/src/convert.jl:173 convert(::Type{T}, !Matched::Factorization) where T<:AbstractArray @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/factorization.jl:104 convert(::Type{T}, !Matched::T) where T @ Base Base.jl:126 ... Stacktrace: [1] setindex! @ ./array.jl:994 [inlined] [2] _distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, ::Val{false}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:103 [3] distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, parallel::Bool) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [4] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/windowtest.jl:8 [5] include @ ./sysimg.jl:38 [inlined] [6] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [8] testfile(file::String, testname::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [9] testfile(file::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:5 [10] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:15 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [13] include(fname::String) @ Main ./sysimg.jl:38 [14] top-level scope @ none:6 [15] eval @ ./boot.jl:430 [inlined] [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [17] _start() @ Base ./client.jl:531 in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/windowtest.jl:8 Test Summary: | Pass Error Total Time RecurrenceAnalysis tests | 80 2 82 1m52.1s Rmatrix analytic | 1 1 12.0s Rqa rna analytic | 76 76 34.8s Skeletontest | 4 4 1m04.5s Windowtest | 1 1 0.5s ERROR: LoadError: Some tests did not pass: 80 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:11 Testing failed after 126.08s ERROR: LoadError: Package RecurrenceAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 175.49s: package tests unexpectedly errored