Package evaluation of ReactionNetworkImporters on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T22:20:48.501 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.97s ################################################################################ # Installation # Installing ReactionNetworkImporters... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [b4db0fb7] + ReactionNetworkImporters v0.15.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 [e2ed5e7c] + Bijections v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.5.0 [70df07ce] + BracketingNonlinearSolve v1.1.3 [2a0fbf3d] + CPUSummary v0.2.6 [00ebfdb7] + CSTParser v3.4.3 [479239e8] + Catalyst v14.4.1 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [861a8166] + Combinatorics v1.0.2 ⌅ [a80b9123] + CommonMark v0.8.16 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.167.2 [459566f4] + DiffEqCallbacks v4.4.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [8d63f2c5] + DispatchDoctor v0.4.19 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.1 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.12.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.2 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [ccbc3e58] + JumpProcesses v9.14.2 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.7 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.3.0 [7ed4a6bd] + LinearSolve v3.7.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v9.71.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.7 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.5.1 [be0214bd] + NonlinearSolveBase v1.5.2 [5959db7a] + NonlinearSolveFirstOrder v1.3.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.2.1 [26075421] + NonlinearSolveSpectralMethods v1.1.1 [6fe1bfb0] + OffsetArrays v1.16.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.0 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.15.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [9dfe8606] + SCCNonlinearSolve v1.0.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.82.1 [19f34311] + SciMLJacobianOperators v0.1.2 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.2.1 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.16 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [7792a7ef] + StrideArraysCore v0.5.7 [2efcf032] + SymbolicIndexingInterface v0.3.38 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.25.1 [0c5d862f] + Symbolics v6.37.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [ed4db957] + TaskLocalValues v0.1.2 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [0796e94c] + Tokenize v0.5.29 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.0 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1102.03s ################################################################################ # Testing # Testing ReactionNetworkImporters Status `/tmp/jl_ws20P2/Project.toml` [4c88cf16] Aqua v0.8.11 [5d742f6a] CSVFiles v1.0.2 [479239e8] Catalyst v14.4.1 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [2b5f629d] DiffEqBase v6.167.2 [961ee093] ModelingToolkit v9.71.0 [1dea7af3] OrdinaryDiffEq v6.93.0 [b4db0fb7] ReactionNetworkImporters v0.15.1 [1bc83da4] SafeTestsets v0.1.0 [c3572dad] Sundials v4.27.0 [0c5d862f] Symbolics v6.37.1 [37e2e46d] LinearAlgebra v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ws20P2/Manifest.toml` [47edcb42] ADTypes v1.14.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [e2ed5e7c] Bijections v0.1.9 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.5.0 [70df07ce] BracketingNonlinearSolve v1.1.3 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [00ebfdb7] CSTParser v3.4.3 [5d742f6a] CSVFiles v1.0.2 [479239e8] Catalyst v14.4.1 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.2 ⌅ [a80b9123] CommonMark v0.8.16 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [2b5f629d] DiffEqBase v6.167.2 [459566f4] DiffEqCallbacks v4.4.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [8d63f2c5] DispatchDoctor v0.4.19 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [5b8099bc] DomainSets v0.7.15 [497a8b3b] DoubleFloats v1.4.3 [7c1d4256] DynamicPolynomials v0.6.1 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.8 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [14197337] GenericLinearAlgebra v0.3.15 [c145ed77] GenericSchur v0.5.4 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.12.1 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [18e54dd8] IntegerMathUtils v0.1.2 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [ccbc3e58] JumpProcesses v9.14.2 [ba0b0d4f] Krylov v0.9.10 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.7 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v3.7.2 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [961ee093] ModelingToolkit v9.71.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.7 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.5.1 [be0214bd] NonlinearSolveBase v1.5.2 [5959db7a] NonlinearSolveFirstOrder v1.3.1 [9a2c21bd] NonlinearSolveQuasiNewton v1.2.1 [26075421] NonlinearSolveSpectralMethods v1.1.1 [4d1e1d77] Nullables v1.0.0 [6fe1bfb0] OffsetArrays v1.16.0 [4d8831e6] OpenSSL v1.4.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [1dea7af3] OrdinaryDiffEq v6.93.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.4.0 [bbf590c4] OrdinaryDiffEqCore v1.22.0 [50262376] OrdinaryDiffEqDefault v1.3.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.6.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.10.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.6.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.9.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.1 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [90014a1f] PDMats v0.11.33 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.0.19 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.26 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [be4d8f0f] Quadmath v0.5.11 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [b4db0fb7] ReactionNetworkImporters v0.15.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [9dfe8606] SCCNonlinearSolve v1.0.0 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.82.1 [19f34311] SciMLJacobianOperators v0.1.2 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.2.1 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [47a9eef4] SparseDiffTools v2.24.0 [0a514795] SparseMatrixColorings v0.4.16 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [c3572dad] Sundials v4.27.0 [2efcf032] SymbolicIndexingInterface v0.3.38 [19f23fe9] SymbolicLimits v0.2.2 [d1185830] SymbolicUtils v3.25.1 [0c5d862f] Symbolics v6.37.1 [5e66a065] TableShowUtils v0.2.6 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.0 [ed4db957] TaskLocalValues v0.1.2 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.0.0 [e0df1984] TextParse v1.0.3 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.28 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.10 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.5.2 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.22.0 [a7c27f48] Unityper v0.1.6 [19fa3120] VertexSafeGraphs v0.2.0 [ea10d353] WeakRefStrings v1.4.2 [897b6980] WeakValueDicts v0.1.0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Quality Assurance | 10 10 5m38.7s 338.936471 seconds (48.42 M allocations: 3.218 GiB, 1.13% gc time, 15.19% compilation time) Precompiling OrdinaryDiffEq... 90629.3 ms ✓ ExponentialUtilities 1851.5 ms ✓ PreallocationTools 6572.4 ms ✓ SparseDiffTools 9762.7 ms ✓ OrdinaryDiffEqCore 3390.2 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 5123.5 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 3638.2 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 6700.2 ms ✓ OrdinaryDiffEqExplicitRK 7818.6 ms ✓ OrdinaryDiffEqHighOrderRK 7700.9 ms ✓ OrdinaryDiffEqStabilizedRK 6988.8 ms ✓ OrdinaryDiffEqSymplecticRK 9551.3 ms ✓ OrdinaryDiffEqSSPRK 10093.0 ms ✓ OrdinaryDiffEqLowOrderRK 5501.7 ms ✓ OrdinaryDiffEqFunctionMap 15394.8 ms ✓ OrdinaryDiffEqTsit5 78075.0 ms ✓ OrdinaryDiffEqVerner 6760.7 ms ✓ OrdinaryDiffEqPRK 7346.2 ms ✓ OrdinaryDiffEqRKN 7335.9 ms ✓ OrdinaryDiffEqFeagin 6639.7 ms ✓ OrdinaryDiffEqQPRK 10270.6 ms ✓ OrdinaryDiffEqLowStorageRK 12994.8 ms ✓ OrdinaryDiffEqDifferentiation 7622.4 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 5581.0 ms ✓ OrdinaryDiffEqNordsieck 6177.6 ms ✓ OrdinaryDiffEqLinear 14014.5 ms ✓ OrdinaryDiffEqExtrapolation 50335.0 ms ✓ OrdinaryDiffEqRosenbrock 13226.6 ms ✓ OrdinaryDiffEqNonlinearSolve 12582.9 ms ✓ OrdinaryDiffEqStabilizedIRK 15508.0 ms ✓ OrdinaryDiffEqSDIRK 54647.0 ms ✓ OrdinaryDiffEqFIRK 12550.9 ms ✓ OrdinaryDiffEqIMEXMultistep 14249.4 ms ✓ OrdinaryDiffEqPDIRK 12504.3 ms ✓ OrdinaryDiffEqExponentialRK 40363.4 ms ✓ OrdinaryDiffEqBDF 73635.3 ms ✓ OrdinaryDiffEqDefault 17111.3 ms ✓ OrdinaryDiffEq 37 dependencies successfully precompiled in 677 seconds. 207 already precompiled. Precompiling SymbolicsPreallocationToolsExt... 11768.5 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 1 dependency successfully precompiled in 17 seconds. 154 already precompiled. Precompiling DataFrames... 33495.4 ms ✓ PrettyTables 82591.1 ms ✓ DataFrames 2 dependencies successfully precompiled in 118 seconds. 31 already precompiled. Precompiling DataFramesExt... 5554.0 ms ✓ Latexify → DataFramesExt 1 dependency successfully precompiled in 7 seconds. 37 already precompiled. Precompiling CSVFiles... 5172.3 ms ✓ DoubleFloats 11981.6 ms ✓ TextParse 9085.5 ms ✓ CSVFiles 3 dependencies successfully precompiled in 27 seconds. 83 already precompiled. Precompiling PolynomialsChainRulesCoreExt... 2724.9 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1 dependency successfully precompiled in 3 seconds. 24 already precompiled. Precompiling PolynomialsMutableArithmeticsExt... 3183.2 ms ✓ Polynomials → PolynomialsMutableArithmeticsExt 1 dependency successfully precompiled in 3 seconds. 26 already precompiled. getting gdat file...done Parsing parameters...done Creating parameters...done Parsing species...done Creating species...done Creating species and parameters for evaluating expressions...done Parsing and adding reactions...done Parsing groups...done Test Summary: | Pass Total Time BNG Birth-Death Test | 3 3 19m18.0s 1157.997875 seconds (164.51 M allocations: 8.582 GiB, 0.31% gc time, 23.43% compilation time: <1% of which was recompilation) getting gdat file...done Parsing parameters...done Creating parameters...done Parsing species...done Creating species...done Creating species and parameters for evaluating expressions...done Parsing and adding reactions...done Parsing groups...done Test Summary: | Pass Total Time BNG Repressilator Test | 3 3 28.6s 28.591855 seconds (11.58 M allocations: 608.525 MiB, 0.62% gc time, 98.67% compilation time: <1% of which was recompilation) getting gdat file...done Parsing parameters...done Creating parameters...done Parsing species...done Creating species...done Creating species and parameters for evaluating expressions...done Parsing and adding reactions...done Parsing groups...done ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 271 running 1 of 1 signal (10): User defined signal 1 _ZN12_GLOBAL__N_111SimpleValue9canHandleEPN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) unknown function (ip: (nil)) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== BNG Higher Order Test: Error During Test ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7009864f9a62) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2142 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2082 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7009864f203d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1837 unknown function (ip: 0x7009864e65fa) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2063 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7009864e62fd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7009864e5ced) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7009864e2196) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46977.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x700987763249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000070097a200010 Total snapshots: 4. Utilization: 0% ╎4 @Base/client.jl:531; _start() ╎ 4 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 4 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 4 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 4 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 4 @Base/boot.jl:430; eval ╎ ╎ 4 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 4 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 4 @Pkg/src/API.jl:147; test ╎ ╎ 4 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 4 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 4 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 4 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 4 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 4 …/src/Operations.jl:2007; test ╎ ╎ ╎ 4 …src/Operations.jl:2063; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 4 …src/Operations.jl:1837; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 4 …src/Operations.jl:1845; #sandbox#115 ╎ ╎ ╎ ╎ 4 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 4 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 4 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 4 …c/Operations.jl:1898; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 4 …c/Operations.jl:1789; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 4 …/Operations.jl:1931; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 4 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 4 …Operations.jl:2082; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 4 …Operations.jl:2142; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 4 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 4 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 4 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 4 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 …ase/task.jl:1021; wait() 3╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [271] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 _ZN4llvm8ExpectedINS_8ArrayRefINS_6object12Elf_Sym_ImplINS2_7ELFTypeILNS_7support10endiannessE1ELb1EEEEEEEED2Ev at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE14getSymbolFlagsENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object10ObjectFile14getSymbolValueENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolAddressENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) getAddress at /source/usr/include/llvm/Object/ObjectFile.h:408 [inlined] get_function_name_and_base at /source/src/debuginfo.cpp:751 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1147 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1179 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1274 ijl_lookup_code_address at /source/src/stackwalk.c:593 lookup at ./stacktraces.jl:108 _lookup_corrected at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:454 #8 at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:443 unknown function (ip: 0x7b091c23c32f) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 229567643 (Pool: 229563902; Big: 3741); GC: 104 at PkgEval terminated after 2728.16s: test duration exceeded the time limit