Package evaluation of ROMEO on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T19:29:45.690


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.02s


################################################################################
# Installation
#

Installing ROMEO...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [1ea8258b] + ROMEO v1.3.3
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [ffbed154] + DocStringExtensions v0.9.4
  [92d709cd] + IrrationalConstants v0.2.4
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
  [43287f4e] + PtrArrays v1.3.0
  [1ea8258b] + ROMEO v1.3.3
  [a2af1166] + SortingAlgorithms v1.2.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [8e850b90] + libblastrampoline_jll v5.11.0+0

Installation completed after 2.64s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 154.14s


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# Testing
#

     Testing ROMEO
      Status `/tmp/jl_kcQkb1/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [6e4b80f9] BenchmarkTools v1.6.0
  [557dad86] MriResearchTools v3.3.2
  [1ea8258b] ROMEO v1.3.3
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_kcQkb1/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [4fba245c] ArrayInterface v7.18.0
  [13072b0f] AxisAlgorithms v1.1.0
  [6e4b80f9] BenchmarkTools v1.6.0
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] CPUSummary v0.2.6
  [d360d2e6] ChainRulesCore v1.25.1
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [944b1d66] CodecZlib v0.7.8
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.0
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [adafc99b] CpuId v0.3.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [ffbed154] DocStringExtensions v0.9.4
  [bd0ea217] EasyRanges v0.1.4
  [7a1cc6ca] FFTW v1.8.1
  [53c48c17] FixedPointNumbers v0.8.5
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [615f187c] IfElse v0.1.1
  [a09fc81d] ImageCore v0.10.5
  [787d08f9] ImageMorphology v0.4.6
  [a98d9a8b] Interpolations v0.15.1
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [10f19ff3] LayoutPointers v0.1.17
  [085fde7c] LocalFilters v2.1.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [bdcacae8] LoopVectorization v0.12.172
  [d125e4d3] ManualMemory v0.1.8
  [dbb5928d] MappedArrays v0.4.2
  [e1d29d7a] Missings v1.2.0
  [e94cdb99] MosaicViews v0.3.4
  [557dad86] MriResearchTools v3.3.2
  [a3a9e032] NIfTI v0.6.1
  [6fe1bfb0] OffsetArrays v1.16.0
  [bac558e1] OrderedCollections v1.8.0
  [5432bcbf] PaddedViews v0.5.12
  [69de0a69] Parsers v2.8.1
  [1d0040c9] PolyesterWeave v0.2.2
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [1ea8258b] ROMEO v1.3.3
  [c84ed2f1] Ratios v0.4.5
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [a2af1166] SortingAlgorithms v1.2.1
  [cae243ae] StackViews v0.1.1
  [aedffcd0] Static v1.2.0
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [2e8cd123] StructuredArrays v0.2.22
  [62fd8b95] TensorCore v0.1.1
  [b718987f] TextWrap v1.0.2
  [8290d209] ThreadingUtilities v0.5.2
  [06e1c1a7] TiledIteration v0.5.0
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [c3b1956e] TypeUtils v1.5.0
  [3a884ed6] UnPack v1.0.2
  [3d5dd08c] VectorizationBase v0.21.71
  [efce3f68] WoodburyMatrices v1.0.0
  [f5851436] FFTW_jll v3.3.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [856f044c] MKL_jll v2025.0.1+1
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary: | Pass  Total     Time
ROMEO.jl      |  192    192  7m09.4s
┌ Warning: robustmask was chosen but no magnitude is available. No mask is used!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:63
┌ Warning: robustmask was chosen but no magnitude is available. No mask is used!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:63
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes!
└ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241
Phase loaded!
Echoes are 1:3
Phase loaded!
Phase offset correction with MCPC-3D-S turned off (only one echo)
Echoes are 1
TEs are 1
Phase loaded!
Phase offset correction with MCPC-3D-S turned off (only one echo)
Echoes are 1
TEs are 1
Phase loaded!
Phase offset correction with MCPC-3D-S set to monopolar
Echoes are [1, 2]
TEs are [1, 2]
Phase loaded!
Phase loaded!
Phase loaded!
Echoes are [1, 2]
TEs are [1, 2, 3, 4, 5]
Phase loaded!
Mag loaded!
Echoes are 1:3
TEs are [1, 2, 3]
Phase loaded!
Mag loaded!
Phase offset correction with MCPC-3D-S turned off (only one echo)
Echoes are 1
TEs are 1
Calculate robustmask from magnitude, saved as mask.nii
individual unwrapping is false
echo 1 used as template
perform unwrapping...
unwrapping finished!
Test Summary: | Pass  Total      Time
RomeoApp      |  578    578  22m34.1s

App 4.5
     Testing ROMEO tests passed 

Testing completed after 1795.56s

PkgEval succeeded after 1975.95s