Package evaluation of QuasiGLM on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:08:25.007 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.67s ################################################################################ # Installation # Installing QuasiGLM... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [e2a73505] + QuasiGLM v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.3.6 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [59287772] + Formatting v0.4.3 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [2dfb63ee] + PooledArrays v1.4.3 [21216c6a] + Preferences v1.4.3 ⌅ [08abe8d2] + PrettyTables v1.3.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [e2a73505] + QuasiGLM v0.1.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 54.34s ################################################################################ # Testing # Testing QuasiGLM Status `/tmp/jl_OLdj7W/Project.toml` [324d7699] CategoricalArrays v0.10.8 ⌃ [a93c6f00] DataFrames v1.3.6 [31c24e10] Distributions v0.25.118 [38e38edf] GLM v1.9.0 ⌅ [08abe8d2] PrettyTables v1.3.1 [e2a73505] QuasiGLM v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_OLdj7W/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [324d7699] CategoricalArrays v0.10.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌃ [a93c6f00] DataFrames v1.3.6 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [59287772] Formatting v0.4.3 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [2dfb63ee] PooledArrays v1.4.3 [21216c6a] Preferences v1.4.3 ⌅ [08abe8d2] PrettyTables v1.3.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [e2a73505] QuasiGLM v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [3eaba693] StatsModels v0.7.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling DistributionsTestExt... 3801.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 5 seconds. 48 already precompiled. Dispersion parameter (ϕ) for model taken to be 1.2933 Standard errors are multiplied by 1.13723 to adjust for dispersion parameter (ϕ) Coefficients: ────────────────────────────────────────────────────────────────────────────────────────────── Parameter Estimate Std. Error t value Pr(>|t|) Lower 95% Upper 95% ────────────────────────────────────────────────────────────────────────────────────────────── (Intercept) 3.04452 0.194352 15.665 1.92696e-5 2.54493 3.54412 Outcome: 2 -0.454255 0.229915 -1.97575 0.105148 -1.04527 0.136761 Outcome: 3 -0.292987 0.219193 -1.33666 0.238926 -0.856441 0.270467 Treatment: 2 3.89684e-16 0.227447 1.7133e-15 1.0 -0.58467 0.58467 Treatment: 3 -9.38599e-17 0.227447 -4.12668e-16 1.0 -0.58467 0.58467 ────────────────────────────────────────────────────────────────────────────────────────────── Dispersion parameter (ϕ) for model taken to be 0.06511 Standard errors are multiplied by 0.25517 to adjust for dispersion parameter (ϕ) Coefficients: ────────────────────────────────────────────────────────────────────────────────────── Parameter Estimate Std. Error t value Pr(>|t|) Lower 95% Upper 95% ────────────────────────────────────────────────────────────────────────────────────── (Intercept) -8.05464 1.2158 -6.62498 5.12512e-9 -10.4777 -5.63156 variety: 2 1.63906 1.2341 1.32814 0.18827 -0.820506 4.09862 variety: 3 3.32651 1.1534 2.88408 0.00515587 1.02778 5.62523 variety: 4 3.58222 1.1493 3.11688 0.00261395 1.29167 5.87277 variety: 5 3.58305 1.14929 3.11763 0.0026081 1.29252 5.87357 variety: 6 3.89325 1.14567 3.39822 0.00110165 1.60993 6.17657 variety: 7 4.73001 1.14101 4.14545 9.03296e-5 2.45597 7.00405 variety: 8 5.52268 1.14088 4.84073 7.02417e-6 3.24891 7.79645 variety: 9 6.79458 1.14609 5.9285 9.36e-8 4.51043 9.07872 site: 2 0.150085 0.619763 0.242165 0.809331 -1.0851 1.38527 site: 3 0.689466 0.575815 1.19737 0.235034 -0.458131 1.83706 site: 4 1.04816 0.55618 1.88457 0.0634694 -0.0603066 2.15663 site: 5 1.61471 0.535823 3.01351 0.00354876 0.546812 2.6826 site: 6 2.37116 0.521568 4.54621 2.12138e-5 1.33167 3.41064 site: 7 2.57053 0.519395 4.94908 4.64087e-6 1.53538 3.60568 site: 8 3.34204 0.515161 6.48737 9.15526e-9 2.31533 4.36876 site: 9 3.50005 0.515 6.79621 2.48114e-9 2.47366 4.52644 site: 10 4.25301 0.517466 8.21891 5.4607e-12 3.2217 5.28432 ────────────────────────────────────────────────────────────────────────────────────── Test Summary: | Pass Total Time QuasiGLM.jl | 2 2 1m18.3s Testing QuasiGLM tests passed Testing completed after 97.8s PkgEval succeeded after 173.38s