Package evaluation of QUBOConstraints on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:40:10.207 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.66s ################################################################################ # Installation # Installing QUBOConstraints... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [110b7fcc] + QUBOConstraints v0.2.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [e37357d9] + ConstraintCommons v0.2.3 [5800fd60] + ConstraintDomains v0.3.15 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [85a47980] + Dictionaries v0.4.5 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] + ExprTools v0.1.10 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.3 [d8418881] + Intervals v1.10.0 [92d709cd] + IrrationalConstants v0.2.4 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [bac558e1] + OrderedCollections v1.8.0 [c18a7f1d] + PatternFolds v0.2.6 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [110b7fcc] + QUBOConstraints v0.2.2 [3cdcf5f2] + RecipesBase v1.3.4 [6c6a2e73] + Scratch v1.2.1 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [dc5dba14] + TZJData v1.5.0+2025b [1c621080] + TestItems v1.0.0 [f269a46b] + TimeZones v1.21.3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 24.04s ################################################################################ # Testing # Testing QUBOConstraints Status `/tmp/jl_WgqWFt/Project.toml` [4c88cf16] Aqua v0.8.11 [5800fd60] ConstraintDomains v0.3.15 [a93c6f00] DataFrames v1.7.0 [587475ba] Flux v0.16.3 [08abe8d2] PrettyTables v2.4.0 [110b7fcc] QUBOConstraints v0.2.2 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [37e2e46d] LinearAlgebra v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WgqWFt/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [e37357d9] ConstraintCommons v0.2.3 [5800fd60] ConstraintDomains v0.3.15 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [f151be2c] EnzymeCore v0.8.8 [e2ba6199] ExprTools v0.1.10 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.13.0 [587475ba] Flux v0.16.3 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.14 [313cdc1a] Indexing v1.1.1 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.3 [d8418881] Intervals v1.10.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.9.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.15 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [872c559c] NNlib v0.9.30 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [0b1bfda6] OneHotArrays v0.2.7 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.0 [c18a7f1d] PatternFolds v0.2.6 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.4 [43287f4e] PtrArrays v1.3.0 [110b7fcc] QUBOConstraints v0.2.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [f269a46b] TimeZones v1.21.3 [28d57a85] Transducers v0.4.84 [013be700] UnsafeAtomics v0.3.0 [e88e6eb3] Zygote v0.7.6 [700de1a5] ZygoteRules v0.2.7 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling QUBOConstraints... 3393.0 ms ✓ PatternFolds 4025.0 ms ✓ ConstraintDomains 3789.5 ms ✓ QUBOConstraints 3 dependencies successfully precompiled in 12 seconds. 55 already precompiled. Method ambiguity: Error During Test at /home/pkgeval/.julia/packages/Aqua/epbUr/src/ambiguities.jl:76 Unexpected Pass Expression: iszero(num_ambiguities) Got correct result, please change to @test if no longer broken. Precompiling DataFrames... 33766.3 ms ✓ PrettyTables 121087.0 ms ✓ DataFrames 2 dependencies successfully precompiled in 156 seconds. 31 already precompiled. Precompiling Flux... 1184.7 ms ✓ Accessors → StructArraysExt 1870.3 ms ✓ MLDataDevices 1172.6 ms ✓ BangBang → BangBangStructArraysExt 1125.4 ms ✓ BangBang → BangBangTablesExt 2402.2 ms ✓ MLCore 1594.9 ms ✓ StructArrays → StructArraysStaticArraysExt 880.2 ms ✓ Optimisers → OptimisersEnzymeCoreExt 7690.7 ms ✓ KernelAbstractions 7458.8 ms ✓ ForwardDiff 1716.6 ms ✓ MLDataDevices → MLDataDevicesChainRulesCoreExt 957.8 ms ✓ MLDataDevices → MLDataDevicesFillArraysExt 1294.2 ms ✓ MLDataDevices → MLDataDevicesSparseArraysExt 1806.9 ms ✓ MLDataDevices → MLDataDevicesChainRulesExt 5647.4 ms ✓ Transducers 2186.3 ms ✓ KernelAbstractions → SparseArraysExt 1708.6 ms ✓ KernelAbstractions → LinearAlgebraExt 1913.7 ms ✓ KernelAbstractions → EnzymeExt 1882.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 2165.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 65427.0 ms ✓ Zygote 1511.3 ms ✓ Transducers → TransducersAdaptExt 15368.5 ms ✓ FLoops 15227.4 ms ✓ NNlib 4351.1 ms ✓ MLDataDevices → MLDataDevicesZygoteExt 2300.8 ms ✓ NNlib → NNlibEnzymeCoreExt 2294.0 ms ✓ NNlib → NNlibSpecialFunctionsExt 27044.5 ms ✓ NNlib → NNlibForwardDiffExt 2834.5 ms ✓ OneHotArrays 20257.8 ms ✓ MLUtils 2032.2 ms ✓ MLDataDevices → MLDataDevicesOneHotArraysExt 61042.3 ms ✓ MLDataDevices → MLDataDevicesMLUtilsExt 32503.8 ms ✓ Flux 32 dependencies successfully precompiled in 306 seconds. 120 already precompiled. Precompiling BangBangDataFramesExt... 4485.4 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 5 seconds. 45 already precompiled. Precompiling TransducersDataFramesExt... 4643.7 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 5 seconds. 61 already precompiled. Test for No binarization on ⟦0,2⟧³ ┌ Warning: `Flux.params(m...)` is deprecated. Use `Flux.trainable(model)` for parameter collection, │ and the explicit `gradient(m -> loss(m, x, y), model)` for gradient computation. └ @ Flux ~/.julia/packages/Flux/3711C/src/deprecations.jl:93 ┌ Warning: Implicit gradients such as `gradient(f, ::Params)` are deprecated in Flux! │ Please see the docs for new explicit form. │ caller = train!(Q::Matrix{Float64}, X::Vector{Vector{Int64}}, penalty::Main.var"##232".var"#26#34"{Dict{Symbol, Any}}, η::Float64, precision::Int64, X_test::Vector{Vector{Int64}}, oversampling::Bool, binarization::Symbol, domains::Vector{ConstraintDomains.RangeDomain{Int64, UnitRange{Int64}}}) at gradient_descent.jl:86 └ @ Main.var"##232" ~/.julia/packages/QUBOConstraints/Kfr3F/test/gradient_descent.jl:86 ┌──────────┬─────────┬───────┬─────────┬──────┬──────────┬──────────┐ │ variable │ mean │ min │ median │ max │ nmissing │ eltype │ │ Symbol │ Float64 │ Real │ Float64 │ Real │ Int64 │ DataType │ ├──────────┼─────────┼───────┼─────────┼──────┼──────────┼──────────┤ │ penalty │ 0.2 │ false │ 0.0 │ true │ 0 │ Bool │ │ predict │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ shifted │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ accurate │ 1.0 │ true │ 1.0 │ true │ 0 │ Bool │ └──────────┴─────────┴───────┴─────────┴──────┴──────────┴──────────┘ Test for Domain Wall binarization on ⟦0,2⟧³ ┌──────────┬─────────┬──────┬─────────┬──────┬──────────┬──────────┐ │ variable │ mean │ min │ median │ max │ nmissing │ eltype │ │ Symbol │ Float64 │ Real │ Float64 │ Real │ Int64 │ DataType │ ├──────────┼─────────┼──────┼─────────┼──────┼──────────┼──────────┤ │ penalty │ 0.6 │ -1.0 │ 1.0 │ 1.0 │ 0 │ Float64 │ │ predict │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ shifted │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ accurate │ 1.0 │ true │ 1.0 │ true │ 0 │ Bool │ └──────────┴─────────┴──────┴─────────┴──────┴──────────┴──────────┘ Test for One-Hot binarization on ⟦0,2⟧³ ┌──────────┬─────────┬──────┬─────────┬──────┬──────────┬──────────┐ │ variable │ mean │ min │ median │ max │ nmissing │ eltype │ │ Symbol │ Float64 │ Real │ Float64 │ Real │ Int64 │ DataType │ ├──────────┼─────────┼──────┼─────────┼──────┼──────────┼──────────┤ │ penalty │ 0.6 │ -1.0 │ 1.0 │ 1.0 │ 0 │ Float64 │ │ predict │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ shifted │ 0.0 │ 0.0 │ 0.0 │ 0.0 │ 0 │ Float64 │ │ accurate │ 1.0 │ true │ 1.0 │ true │ 0 │ Bool │ └──────────┴─────────┴──────┴─────────┴──────┴──────────┴──────────┘ Test for Domain Wall pre-encoded on ⟦0,2⟧³ ┌ Warning: Implicit gradients such as `gradient(f, ::Params)` are deprecated in Flux! │ Please see the docs for new explicit form. │ caller = train!(Q::Matrix{Float64}, X::Vector{Vector{Bool}}, penalty::Main.var"##232".var"#26#34"{Dict{Symbol, Any}}, η::Float64, precision::Int64, X_test::Vector{Vector{Bool}}, oversampling::Bool, binarization::Symbol, domains::Vector{ConstraintDomains.RangeDomain{Int64, UnitRange{Int64}}}) at gradient_descent.jl:86 └ @ Main.var"##232" ~/.julia/packages/QUBOConstraints/Kfr3F/test/gradient_descent.jl:86 ┌──────────┬─────────┬───────┬─────────┬──────┬──────────┬──────────┐ │ variable │ mean │ min │ median │ max │ nmissing │ eltype │ │ Symbol │ Float64 │ Real │ Float64 │ Real │ Int64 │ DataType │ ├──────────┼─────────┼───────┼─────────┼──────┼──────────┼──────────┤ │ penalty │ 5.593 │ -1.0 │ 9.0 │ 9.0 │ 0 │ Real │ │ predict │ 0.4965 │ 0.0 │ 0.0 │ 1.0 │ 0 │ Float64 │ │ shifted │ 0.4965 │ 0.0 │ 0.0 │ 1.0 │ 0 │ Float64 │ │ accurate │ 0.996 │ false │ 1.0 │ true │ 0 │ Bool │ └──────────┴─────────┴───────┴─────────┴──────┴──────────┴──────────┘ Test for One-Hot pre-encoded on ⟦0,2⟧³ ┌──────────┬─────────┬───────┬─────────┬──────┬──────────┬──────────┐ │ variable │ mean │ min │ median │ max │ nmissing │ eltype │ │ Symbol │ Float64 │ Real │ Float64 │ Real │ Int64 │ DataType │ ├──────────┼─────────┼───────┼─────────┼──────┼──────────┼──────────┤ │ penalty │ 8.579 │ -1.0 │ 9.0 │ 9.0 │ 0 │ Real │ │ predict │ 0.4965 │ 0.0 │ 0.0 │ 1.0 │ 0 │ Float64 │ │ shifted │ 0.4965 │ 0.0 │ 0.0 │ 1.0 │ 0 │ Float64 │ │ accurate │ 0.995 │ false │ 1.0 │ true │ 0 │ Bool │ └──────────┴─────────┴───────┴─────────┴──────┴──────────┴──────────┘ Test Summary: | Pass Error Total Time Package tests: CompositionalNetworks | 16 1 17 16m43.7s Aqua.jl | 10 1 11 3m40.4s Method ambiguity | 1 1 12.4s Unbound type parameters | 1 1 0.3s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 8.5s Piracy | 1 1 0.3s Persistent tasks | 1 1 1m52.2s Ambiguities: QUBOConstraints | 0 0.0s Piracies: QUBOConstraints | 1 1 0.1s Dependencies compatibility (no extras) | 3 3 1.6s TestItemRunner | 6 6 13m03.2s ERROR: LoadError: Some tests did not pass: 16 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/QUBOConstraints/Kfr3F/test/runtests.jl:5 Testing failed after 1004.25s ERROR: LoadError: Package QUBOConstraints errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1067.26s: package tests unexpectedly errored