Package evaluation of Publish on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:17:55.281
################################################################################
# Set-up
#
Installing PkgEval dependencies (TestEnv)...
Set-up completed after 8.88s
################################################################################
# Installation
#
Installing Publish...
Resolving package versions...
Updating `~/.julia/environments/v1.11/Project.toml`
[f065f642] + Publish v0.10.0
Updating `~/.julia/environments/v1.11/Manifest.toml`
[1520ce14] + AbstractTrees v0.4.5
[79e6a3ab] + Adapt v4.3.0
[66dad0bd] + AliasTables v1.1.3
[ec485272] + ArnoldiMethod v0.4.0
⌅ [a80b9123] + CommonMark v0.8.16
[34da2185] + Compat v4.16.0
[5060bff5] + ConcurrentCollections v0.1.1
[a8cc5b0e] + Crayons v4.1.1
[d58978e5] + Dagger v0.18.14
[9a962f9c] + DataAPI v1.16.0
[864edb3b] + DataStructures v0.18.22
[e2d170a0] + DataValueInterfaces v1.0.0
[fab6aee4] + DistributedNext v1.0.0
[31c24e10] + Distributions v0.25.118
[ffbed154] + DocStringExtensions v0.9.4
[48062228] + FilePathsBase v0.9.24
[72696420] + FileTrees v0.3.10
[1a297f60] + FillArrays v1.13.0
[59287772] + Formatting v0.4.3
[c27321d9] + Glob v1.3.1
[86223c79] + Graphs v1.12.1
⌅ [cd3eb016] + HTTP v0.9.17
[076d061b] + HashArrayMappedTries v0.2.0
[34004b35] + HypergeometricFunctions v0.3.28
[b5f81e59] + IOCapture v0.2.5
[d25df0c9] + Inflate v0.1.5
[83e8ac13] + IniFile v0.5.1
[92d709cd] + IrrationalConstants v0.2.4
[c8e1da08] + IterTools v1.10.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[692b3bcd] + JLLWrappers v1.7.0
[682c06a0] + JSON v0.21.4
⌅ [16fef848] + LiveServer v0.7.4
[2ab3a3ac] + LogExpFunctions v0.3.29
[1914dd2f] + MacroTools v0.5.15
[739be429] + MbedTLS v1.1.9
[f9f48841] + MemPool v0.4.12
[e1d29d7a] + Missings v1.2.0
[ffc61752] + Mustache v1.0.20
[a15396b6] + OnlineStats v1.7.1
[925886fa] + OnlineStatsBase v1.7.1
[bac558e1] + OrderedCollections v1.8.0
[90014a1f] + PDMats v0.11.33
[69de0a69] + Parsers v2.8.1
⌅ [aea7be01] + PrecompileTools v1.2.1
[21216c6a] + Preferences v1.4.3
⌅ [08abe8d2] + PrettyTables v1.3.1
[43287f4e] + PtrArrays v1.3.0
[f065f642] + Publish v0.10.0
[1fd47b50] + QuadGK v2.11.2
[3cdcf5f2] + RecipesBase v1.3.4
[189a3867] + Reexport v1.2.2
⌅ [05181044] + RelocatableFolders v0.2.0
[ae029012] + Requires v1.3.1
[79098fc4] + Rmath v0.8.0
[7e506255] + ScopedValues v1.3.0
[6c6a2e73] + Scratch v1.2.1
[699a6c99] + SimpleTraits v0.9.4
[a2af1166] + SortingAlgorithms v1.2.1
[276daf66] + SpecialFunctions v2.5.0
[90137ffa] + StaticArrays v1.9.13
[1e83bf80] + StaticArraysCore v1.4.3
[10745b16] + Statistics v1.11.1
[82ae8749] + StatsAPI v1.7.0
[2913bbd2] + StatsBase v0.34.4
[4c63d2b9] + StatsFuns v1.4.0
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.12.0
[ed4db957] + TaskLocalValues v0.1.2
[9ac5f52a] + Tectonic v0.8.0
[a526e669] + TimespanLogging v0.1.0
[5c2747f8] + URIs v1.5.2
[efe28fd5] + OpenSpecFun_jll v0.5.6+0
[f50d1b31] + Rmath_jll v0.5.1+0
[0dad84c5] + ArgTools v1.1.2
[56f22d72] + Artifacts v1.11.0
[2a0f44e3] + Base64 v1.11.0
[ade2ca70] + Dates v1.11.0
[8ba89e20] + Distributed v1.11.0
[f43a241f] + Downloads v1.6.0
[7b1f6079] + FileWatching v1.11.0
[b77e0a4c] + InteractiveUtils v1.11.0
[b27032c2] + LibCURL v0.6.4
[76f85450] + LibGit2 v1.11.0
[8f399da3] + Libdl v1.11.0
[37e2e46d] + LinearAlgebra v1.11.0
[56ddb016] + Logging v1.11.0
[d6f4376e] + Markdown v1.11.0
[a63ad114] + Mmap v1.11.0
[ca575930] + NetworkOptions v1.2.0
[44cfe95a] + Pkg v1.11.0
[de0858da] + Printf v1.11.0
[9abbd945] + Profile v1.11.0
[9a3f8284] + Random v1.11.0
[ea8e919c] + SHA v0.7.0
[9e88b42a] + Serialization v1.11.0
[1a1011a3] + SharedArrays v1.11.0
[6462fe0b] + Sockets v1.11.0
[2f01184e] + SparseArrays v1.11.0
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML v1.0.3
[a4e569a6] + Tar v1.10.0
[8dfed614] + Test v1.11.0
[cf7118a7] + UUIDs v1.11.0
[4ec0a83e] + Unicode v1.11.0
[e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] + LibCURL_jll v8.6.0+0
[e37daf67] + LibGit2_jll v1.7.2+0
[29816b5a] + LibSSH2_jll v1.11.0+1
[c8ffd9c3] + MbedTLS_jll v2.28.6+0
[14a3606d] + MozillaCACerts_jll v2023.12.12
[4536629a] + OpenBLAS_jll v0.3.27+1
[05823500] + OpenLibm_jll v0.8.5+0
[bea87d4a] + SuiteSparse_jll v7.7.0+0
[83775a58] + Zlib_jll v1.2.13+1
[8e850b90] + libblastrampoline_jll v5.11.0+0
[8e850ede] + nghttp2_jll v1.59.0+0
[3f19e933] + p7zip_jll v17.4.0+2
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Installation completed after 4.42s
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# Precompilation
#
Precompiling PkgEval dependencies...
┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:63
Precompiling package dependencies...
Precompilation completed after 239.35s
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# Testing
#
Testing Publish
┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920
Status `/tmp/jl_qLq3bk/Project.toml`
⌃ [a93c6f00] DataFrames v1.3.6
[91a5bcdd] Plots v1.40.11
⌃ [f065f642] Publish v0.8.0
[ce6b1742] RDatasets v0.7.7
[8dfed614] Test v1.11.0
Status `/tmp/jl_qLq3bk/Manifest.toml`
⌅ [1520ce14] AbstractTrees v0.3.4
[336ed68f] CSV v0.10.15
[324d7699] CategoricalArrays v0.10.8
[944b1d66] CodecZlib v0.7.8
[35d6a980] ColorSchemes v3.29.0
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
⌅ [a80b9123] CommonMark v0.8.16
[34da2185] Compat v4.16.0
[d38c429a] Contour v0.6.3
[a8cc5b0e] Crayons v4.1.1
⌅ [d58978e5] Dagger v0.11.10
[9a962f9c] DataAPI v1.16.0
⌃ [a93c6f00] DataFrames v1.3.6
[864edb3b] DataStructures v0.18.22
[e2d170a0] DataValueInterfaces v1.0.0
[8bb1440f] DelimitedFiles v1.9.1
[ffbed154] DocStringExtensions v0.9.4
[e2ba6199] ExprTools v0.1.10
[c87230d0] FFMPEG v0.4.2
⌃ [5789e2e9] FileIO v1.16.5
[48062228] FilePathsBase v0.9.24
⌅ [72696420] FileTrees v0.2.2
[53c48c17] FixedPointNumbers v0.8.5
[1fa38f19] Format v1.3.7
[59287772] Formatting v0.4.3
[28b8d3ca] GR v0.73.13
[c27321d9] Glob v1.3.1
[42e2da0e] Grisu v1.0.2
⌅ [cd3eb016] HTTP v0.9.17
[b5f81e59] IOCapture v0.2.5
[83e8ac13] IniFile v0.5.1
[842dd82b] InlineStrings v1.4.3
[41ab1584] InvertedIndices v1.3.1
[92d709cd] IrrationalConstants v0.2.4
[c8e1da08] IterTools v1.10.0
[82899510] IteratorInterfaceExtensions v1.0.0
[1019f520] JLFzf v0.1.10
[692b3bcd] JLLWrappers v1.7.0
[682c06a0] JSON v0.21.4
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.7
⌅ [16fef848] LiveServer v0.6.6
[2ab3a3ac] LogExpFunctions v0.3.29
[1914dd2f] MacroTools v0.5.15
[739be429] MbedTLS v1.1.9
[442fdcdd] Measures v0.3.2
⌅ [f9f48841] MemPool v0.3.9
[e1d29d7a] Missings v1.2.0
[78c3b35d] Mocking v0.8.1
[ffc61752] Mustache v1.0.20
[77ba4419] NaNMath v1.1.3
[bac558e1] OrderedCollections v1.8.0
[69de0a69] Parsers v2.8.1
[ccf2f8ad] PlotThemes v3.3.0
[995b91a9] PlotUtils v1.4.3
[91a5bcdd] Plots v1.40.11
[2dfb63ee] PooledArrays v1.4.3
⌅ [aea7be01] PrecompileTools v1.2.1
[21216c6a] Preferences v1.4.3
⌅ [08abe8d2] PrettyTables v1.3.1
⌃ [f065f642] Publish v0.8.0
⌅ [df47a6cb] RData v0.8.3
[ce6b1742] RDatasets v0.7.7
[3cdcf5f2] RecipesBase v1.3.4
[01d81517] RecipesPipeline v0.6.12
[189a3867] Reexport v1.2.2
[05181044] RelocatableFolders v1.0.1
[ae029012] Requires v1.3.1
[6c6a2e73] Scratch v1.2.1
[91c51154] SentinelArrays v1.4.8
[992d4aef] Showoff v1.0.3
[a2af1166] SortingAlgorithms v1.2.1
[860ef19b] StableRNGs v1.0.2
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.0
⌅ [2913bbd2] StatsBase v0.33.21
[dc5dba14] TZJData v1.5.0+2025b
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
⌅ [9ac5f52a] Tectonic v0.4.1
[62fd8b95] TensorCore v0.1.1
[f269a46b] TimeZones v1.21.3
[3bb67fe8] TranscodingStreams v0.11.3
[5c2747f8] URIs v1.5.2
[1cfade01] UnicodeFun v0.4.1
[1986cc42] Unitful v1.22.0
[45397f5d] UnitfulLatexify v1.6.4
[41fe7b60] Unzip v0.2.0
[ea10d353] WeakRefStrings v1.4.2
[76eceee3] WorkerUtilities v1.6.1
[6e34b625] Bzip2_jll v1.0.9+0
[83423d85] Cairo_jll v1.18.4+0
[ee1fde0b] Dbus_jll v1.16.2+0
[2702e6a9] EpollShim_jll v0.0.20230411+1
[2e619515] Expat_jll v2.6.5+0
⌅ [b22a6f82] FFMPEG_jll v4.4.4+1
[a3f928ae] Fontconfig_jll v2.16.0+0
[d7e528f0] FreeType2_jll v2.13.4+0
[559328eb] FriBidi_jll v1.0.17+0
[0656b61e] GLFW_jll v3.4.0+2
[d2c73de3] GR_jll v0.73.13+0
[78b55507] Gettext_jll v0.21.0+0
⌃ [7746bdde] Glib_jll v2.82.4+0
[3b182d85] Graphite2_jll v1.3.15+0
[2e76f6c2] HarfBuzz_jll v8.5.0+0
[aacddb02] JpegTurbo_jll v3.1.1+0
[c1c5ebd0] LAME_jll v3.100.2+0
[88015f11] LERC_jll v4.0.1+0
[1d63c593] LLVMOpenMP_jll v18.1.7+0
[dd4b983a] LZO_jll v2.10.3+0
⌅ [e9f186c6] Libffi_jll v3.2.2+2
[d4300ac3] Libgcrypt_jll v1.11.1+0
[7e76a0d4] Libglvnd_jll v1.7.0+0
[7add5ba3] Libgpg_error_jll v1.51.1+0
[94ce4f54] Libiconv_jll v1.18.0+0
[4b2f31a3] Libmount_jll v2.41.0+0
[89763e89] Libtiff_jll v4.7.1+0
[38a345b3] Libuuid_jll v2.41.0+0
[e7412a2a] Ogg_jll v1.3.5+1
[458c3c95] OpenSSL_jll v3.0.16+0
[91d4177d] Opus_jll v1.3.3+0
[36c8627f] Pango_jll v1.56.1+0
[30392449] Pixman_jll v0.44.2+0
⌅ [c0090381] Qt6Base_jll v6.7.1+1
⌅ [629bc702] Qt6Declarative_jll v6.7.1+2
⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1
⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1
[a44049a8] Vulkan_Loader_jll v1.3.243+0
⌃ [a2964d1f] Wayland_jll v1.21.0+2
[2381bf8a] Wayland_protocols_jll v1.36.0+0
[02c8fc9c] XML2_jll v2.13.6+1
[aed1982a] XSLT_jll v1.1.43+0
[ffd25f8a] XZ_jll v5.8.1+0
[f67eecfb] Xorg_libICE_jll v1.1.2+0
[c834827a] Xorg_libSM_jll v1.2.4+0
[4f6342f7] Xorg_libX11_jll v1.8.6+3
[0c0b7dd1] Xorg_libXau_jll v1.0.12+0
[935fb764] Xorg_libXcursor_jll v1.2.3+0
[a3789734] Xorg_libXdmcp_jll v1.1.5+0
[1082639a] Xorg_libXext_jll v1.3.6+3
[d091e8ba] Xorg_libXfixes_jll v6.0.0+0
[a51aa0fd] Xorg_libXi_jll v1.8.2+0
[d1454406] Xorg_libXinerama_jll v1.1.5+0
[ec84b674] Xorg_libXrandr_jll v1.5.4+0
[ea2f1a96] Xorg_libXrender_jll v0.9.11+1
[14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0
[c7cfdc94] Xorg_libxcb_jll v1.17.0+3
[cc61e674] Xorg_libxkbfile_jll v1.1.2+1
[e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
[12413925] Xorg_xcb_util_image_jll v0.4.0+1
[2def613f] Xorg_xcb_util_jll v0.4.0+1
[975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
[0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
[c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
[35661453] Xorg_xkbcomp_jll v1.4.6+1
[33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
[c5fb5394] Xorg_xtrans_jll v1.6.0+0
[3161d3a3] Zstd_jll v1.5.7+1
[35ca27e7] eudev_jll v3.2.9+0
[214eeab7] fzf_jll v0.56.3+0
[1a1c6b14] gperf_jll v3.1.1+1
[a4ae2306] libaom_jll v3.11.0+0
[0ac62f75] libass_jll v0.15.2+0
[1183f4f0] libdecor_jll v0.2.2+0
[2db6ffa8] libevdev_jll v1.11.0+0
[f638f0a6] libfdk_aac_jll v2.0.3+0
[36db933b] libinput_jll v1.18.0+0
[b53b4c65] libpng_jll v1.6.47+0
[f27f6e37] libvorbis_jll v1.3.7+2
[009596ad] mtdev_jll v1.1.6+0
⌅ [1270edf5] x264_jll v2021.5.5+0
⌅ [dfaa095f] x265_jll v3.5.0+0
[d8fb68d0] xkbcommon_jll v1.4.1+2
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.11.0
[de0858da] Printf v1.11.0
[9abbd945] Profile v1.11.0
[3fa0cd96] REPL v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.11.0
[f489334b] StyledStrings v1.11.0
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] LibCURL_jll v8.6.0+0
[e37daf67] LibGit2_jll v1.7.2+0
[29816b5a] LibSSH2_jll v1.11.0+1
[c8ffd9c3] MbedTLS_jll v2.28.6+0
[14a3606d] MozillaCACerts_jll v2023.12.12
[4536629a] OpenBLAS_jll v0.3.27+1
[05823500] OpenLibm_jll v0.8.5+0
[efcefdf7] PCRE2_jll v10.42.0+1
[bea87d4a] SuiteSparse_jll v7.7.0+0
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.59.0+0
[3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
Testing Running tests...
Precompiling DataFrames...
Info Given DataFrames was explicitly requested, output will be shown live [0K
[0KWARNING: method definition for #DataFrame#195 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it.
[0KWARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it.
44848.0 ms ✓ DataFrames
1 dependency successfully precompiled in 46 seconds. 30 already precompiled.
1 dependency had output during precompilation:
┌ DataFrames
│ [Output was shown above]
└
note: this is a BETA release; ask questions and report bugs at https://tectonic.newton.cx/
note: connecting to https://archive.org/services/purl/net/pkgwpub/tectonic-default
error: couldn't probe
caused by: unexpected HTTP response to URL https://archive.org/services/purl/net/pkgwpub/tectonic-default: 404 Not Found
Cells: Error During Test at /home/pkgeval/.julia/packages/Publish/7qwwh/test/runtests.jl:13
Test threw exception
Expression: pdf(path; globals = Dict("publish" => Dict("cell-imports" => [CellImportedModule]))) == path
failed process: Process(`/home/pkgeval/.julia/artifacts/6f7c9a3666509f7199b7397b33424a0ed100ecd8/tectonic ./cell_tests.tex`, ProcessExited(1)) [1]
Stacktrace:
[1] pipeline_error
@ ./process.jl:598 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:513
[3] run
@ ./process.jl:510 [inlined]
[4] #105
@ ~/.julia/packages/Publish/xpLfl/src/save.jl:358 [inlined]
[5] tectonic(f::Publish.var"#105#111"{String})
@ Tectonic ~/.julia/packages/Tectonic/IZC9D/src/Tectonic.jl:28
[6] (::Publish.var"#100#106"{Publish.Project})()
@ Publish ~/.julia/packages/Publish/xpLfl/src/save.jl:357
[7] cd(f::Publish.var"#100#106"{Publish.Project}, dir::String)
@ Base.Filesystem ./file.jl:112
[8] #136
@ ~/.julia/packages/Publish/xpLfl/src/utilities.jl:11 [inlined]
[9] mktempdir(fn::Publish.var"#136#137"{Publish.var"#100#106"{Publish.Project}}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:819
[10] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:815
[11] mktempdir
@ ./file.jl:815 [inlined]
[12] sandbox
@ ~/.julia/packages/Publish/xpLfl/src/utilities.jl:11 [inlined]
[13] #pdf#99
@ ~/.julia/packages/Publish/xpLfl/src/save.jl:321 [inlined]
[14] pdf
@ ~/.julia/packages/Publish/xpLfl/src/save.jl:318 [inlined]
[15] macro expansion
@ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:676 [inlined]
[16] macro expansion
@ ~/.julia/packages/Publish/7qwwh/test/runtests.jl:13 [inlined]
[17] macro expansion
@ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
[18] macro expansion
@ ~/.julia/packages/Publish/7qwwh/test/runtests.jl:11 [inlined]
[19] macro expansion
@ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
[20] top-level scope
@ ~/.julia/packages/Publish/7qwwh/test/runtests.jl:10
Cells: Test Failed at /home/pkgeval/.julia/packages/Publish/7qwwh/test/runtests.jl:20
Expression: occursin(x1, read("README.html", String))
Evaluated: occursin("2-element Vector{Int64}:\n 1\n 2", "\n\n
\n Cell Tests
\nusing DataFrames\n@assert imported_dataframe isa DataFrame\nimported_dataframe\n
\nTable(imported_dataframe)\n
\n\n
\n\n\n
\n\n\n
\n \n \n \n \n \n \n 1 | \n 2 | \n
\n \n 2 | \n 3 | \n
\n \n 3 | \n 4 | \n
\n \n 4 | \n 5 | \n
\n \n
\n\n\n
\nx = [1, 2]\n
\n2-element Vector{Int64}:\n 2\n 2
\nx[1] = 2\nx\n
\n2-element Vector{Int64}:\n 2\n 2
\n\n \n \n