Package evaluation of ProteinChains on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T16:17:24.664


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.04s


################################################################################
# Installation
#

Installing ProteinChains...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [b8e8f2a5] + ProteinChains v0.7.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [79e6a3ab] + Adapt v4.3.0
  [ec485272] + ArnoldiMethod v0.4.0
  [8ed43e74] + AssigningSecondaryStructure v0.5.1
  [a9b6321e] + Atomix v1.1.1
  [9ac9c2a2] + Backboner v0.12.2
  [47718e42] + BioGenerics v0.1.5
  [de9282ab] + BioStructures v4.4.2
  [3c28c6f8] + BioSymbols v5.1.3
  [c3b6d118] + BitIntegers v0.3.5
  [d360d2e6] + ChainRulesCore v1.25.1
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.16.0
  [864edb3b] + DataStructures v0.18.22
  [b4f34e82] + Distances v0.10.12
  [e139c391] + DynamicStructs v0.2.3
  [5789e2e9] + FileIO v1.17.0
  [1fa38f19] + Format v1.3.7
  [46192b85] + GPUArraysCore v0.2.0
  [86223c79] + Graphs v1.12.1
  [f67ccb44] + HDF5 v0.17.2
  [076d061b] + HashArrayMappedTries v0.2.0
  [d25df0c9] + Inflate v0.1.5
  [033835bb] + JLD2 v0.5.12
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [63c18a36] + KernelAbstractions v0.9.34
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.15
  [872c559c] + NNlib v0.9.30
  [b8a86587] + NearestNeighbors v0.4.21
  [bac558e1] + OrderedCollections v1.8.0
  [69de0a69] + Parsers v2.8.1
  [7b2266bf] + PeriodicTable v1.2.1
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [b8e8f2a5] + ProteinChains v0.7.1
  [94ee1d12] + Quaternions v0.7.6
  [c1ae055f] + RealDot v0.1.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [6038ab10] + Rotations v1.7.1
  [7e506255] + ScopedValues v1.3.0
  [699a6c99] + SimpleTraits v0.9.4
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.22.0
  [013be700] + UnsafeAtomics v0.3.0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.76s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 129.73s


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# Testing
#

     Testing ProteinChains
      Status `/tmp/jl_Vw8iN3/Project.toml`
  [8ed43e74] AssigningSecondaryStructure v0.5.1
  [9ac9c2a2] Backboner v0.12.2
  [de9282ab] BioStructures v4.4.2
  [c3b6d118] BitIntegers v0.3.5
  [34da2185] Compat v4.16.0
  [e139c391] DynamicStructs v0.2.3
  [86223c79] Graphs v1.12.1
  [f67ccb44] HDF5 v0.17.2
  [033835bb] JLD2 v0.5.12
  [682c06a0] JSON v0.21.4
  [7b2266bf] PeriodicTable v1.2.1
  [b8e8f2a5] ProteinChains v0.7.1
  [189a3867] Reexport v1.2.2
  [90137ffa] StaticArrays v1.9.13
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Vw8iN3/Manifest.toml`
  [79e6a3ab] Adapt v4.3.0
  [ec485272] ArnoldiMethod v0.4.0
  [8ed43e74] AssigningSecondaryStructure v0.5.1
  [a9b6321e] Atomix v1.1.1
  [9ac9c2a2] Backboner v0.12.2
  [47718e42] BioGenerics v0.1.5
  [de9282ab] BioStructures v4.4.2
  [3c28c6f8] BioSymbols v5.1.3
  [c3b6d118] BitIntegers v0.3.5
  [d360d2e6] ChainRulesCore v1.25.1
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.16.0
  [864edb3b] DataStructures v0.18.22
  [b4f34e82] Distances v0.10.12
  [e139c391] DynamicStructs v0.2.3
  [5789e2e9] FileIO v1.17.0
  [1fa38f19] Format v1.3.7
  [46192b85] GPUArraysCore v0.2.0
  [86223c79] Graphs v1.12.1
  [f67ccb44] HDF5 v0.17.2
  [076d061b] HashArrayMappedTries v0.2.0
  [d25df0c9] Inflate v0.1.5
  [033835bb] JLD2 v0.5.12
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [63c18a36] KernelAbstractions v0.9.34
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.15
  [872c559c] NNlib v0.9.30
  [b8a86587] NearestNeighbors v0.4.21
  [bac558e1] OrderedCollections v1.8.0
  [69de0a69] Parsers v2.8.1
  [7b2266bf] PeriodicTable v1.2.1
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [b8e8f2a5] ProteinChains v0.7.1
  [94ee1d12] Quaternions v0.7.6
  [c1ae055f] RealDot v0.1.0
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [6038ab10] Rotations v1.7.1
  [7e506255] ScopedValues v1.3.0
  [699a6c99] SimpleTraits v0.9.4
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [1986cc42] Unitful v1.22.0
  [013be700] UnsafeAtomics v0.3.0
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.0+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+2
  [458c3c95] OpenSSL_jll v3.0.16+0
  [477f73a3] libaec_jll v1.1.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
[ Info: Downloading file from PDB: 1ASS
[ Info: Downloading file from PDB: 1ASS
[ Info: File exists: 1ASS
[ Info: Downloading file from PDB: 3HFM
[ Info: Downloading file from PDB: 1EYE
[ Info: Downloading file from PDB: 3HFM
Test Summary:    | Pass  Total     Time
ProteinChains.jl |   36     36  1m58.8s
     Testing ProteinChains tests passed 

Testing completed after 142.28s

PkgEval succeeded after 298.74s