Package evaluation of PointNeighbors on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T11:13:06.314 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.82s ################################################################################ # Installation # Installing PointNeighbors... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [1c4d5385] + PointNeighbors v0.4.10 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [46192b85] + GPUArraysCore v0.2.0 [615f187c] + IfElse v0.1.1 [63c18a36] + KernelAbstractions v0.9.34 [10f19ff3] + LayoutPointers v0.1.17 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [1c4d5385] + PointNeighbors v0.4.10 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.7 [8290d209] + ThreadingUtilities v0.5.2 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 615.95s ################################################################################ # Testing # Testing PointNeighbors Status `/tmp/jl_zPBhHR/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [91a5bcdd] Plots v1.40.11 [1c4d5385] PointNeighbors v0.4.10 [66699cd8] TrixiParticles v0.2.7 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zPBhHR/Manifest.toml` [47edcb42] ADTypes v1.14.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [3cb15238] ChangePrecision v1.1.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [38540f10] CommonSolve v0.2.4 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling TrixiParticles... 1624.7 ms ✓ ChangePrecision 4507.3 ms ✓ RecursiveArrayTools 114331.6 ms ✓ DataFrames 1768.2 ms ✓ KernelAbstractions → EnzymeExt 15988.5 ms ✓ StrideArrays 1070.7 ms ✓ TrixiBase 2022.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 1710.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 47122.9 ms ✓ SciMLBase 12429.6 ms ✓ DiffEqBase 3760.2 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 49465.6 ms ✓ DiffEqCallbacks 160690.9 ms ✓ TrixiParticles 13 dependencies successfully precompiled in 418 seconds. 175 already precompiled. Precompiling TestExt... 970.0 ms ✓ Accessors → TestExt 1 dependency successfully precompiled in 1 seconds. 19 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). Precompiling Plots... 14476.3 ms ✓ PlotUtils 3116.2 ms ✓ StatsBase 6603.0 ms ✓ PlotThemes 6001.8 ms ✓ RecipesPipeline 115240.1 ms ✓ Plots 17008.8 ms ✓ Plots → UnitfulExt 6 dependencies successfully precompiled in 167 seconds. 180 already precompiled. Precompiling SparseArraysExt... 2191.7 ms ✓ KernelAbstractions → SparseArraysExt 1 dependency successfully precompiled in 3 seconds. 32 already precompiled. Precompiling RecursiveArrayToolsSparseArraysExt... 1797.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 42 already precompiled. Precompiling SciMLOperatorsSparseArraysExt... 1509.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling DiffEqBaseSparseArraysExt... 3172.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 1 dependency successfully precompiled in 4 seconds. 96 already precompiled. Precompiling SpecialFunctionsExt... 1516.8 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 49 already precompiled. Precompiling FileIOExt... 4879.1 ms ✓ FileIO → HTTPExt 16820.7 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 23 seconds. 187 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). TrivialNeighborhoodSearch with 50 = 50 particles finished in 5.332 μs GridNeighborhoodSearch with 50 = 50 particles finished in 4.638 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 1.244 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 83.569 μs GridNeighborhoodSearch with 200 = 200 particles finished in 19.030 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 4.580 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 9.450 μs GridNeighborhoodSearch with 50 = 50 particles finished in 7.410 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 4.390 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 123.289 μs GridNeighborhoodSearch with 200 = 200 particles finished in 30.470 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 17.470 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 23.869 μs GridNeighborhoodSearch with 50 = 50 particles finished in 25.420 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 14.269 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 204.068 μs GridNeighborhoodSearch with 200 = 200 particles finished in 104.349 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 56.880 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 16.299 μs GridNeighborhoodSearch with 50 = 50 particles finished in 14.610 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 11.220 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 131.308 μs GridNeighborhoodSearch with 200 = 200 particles finished in 60.640 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 36.630 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 3.980 ns GridNeighborhoodSearch with 50 = 50 particles finished in 4.482 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 14.010 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 4.050 ns GridNeighborhoodSearch with 200 = 200 particles finished in 17.710 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 62.460 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 1.670 ns GridNeighborhoodSearch with 50 = 50 particles finished in 843.450 ns PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 10.360 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 1.650 ns GridNeighborhoodSearch with 200 = 200 particles finished in 3.637 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 45.200 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 37.380 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 52.599 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 12.200 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 629.294 μs GridNeighborhoodSearch with 20x20 = 400 particles finished in 318.737 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 54.079 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 76.329 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 90.850 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 46.490 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 965.480 μs GridNeighborhoodSearch with 20x20 = 400 particles finished in 537.094 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 211.468 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 177.909 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 180.098 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 143.188 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.618 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.026 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 661.374 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 203.428 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 255.857 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 128.209 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.658 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.253 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 817.152 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 3.259 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 8.360 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 96.069 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 3.310 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 34.780 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 579.615 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 2.020 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 2.330 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 93.789 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 2.035 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 7.580 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 542.485 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 98.019 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 215.178 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 38.240 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.713 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.982 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 243.348 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 272.548 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 291.277 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 204.658 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.862 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.817 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.203 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 559.634 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 662.954 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 520.285 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.024 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 4.645 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 3.234 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 884.702 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 1.047 ms PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 866.252 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 6.609 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 6.257 ms ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7abf13362492) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2142 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2082 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7abf1335a6fd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1837 unknown function (ip: 0x7abf1334ecd6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2063 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7abf1334e9dd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7abf1334e3cd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7abf1334a876) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46977.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7abf14685249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.598 ms ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007abf07000010 Total snapshots: 18. Utilization: 0% ╎18 @Base/client.jl:531; _start() ╎ 18 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 18 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 18 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path:… ╎ 18 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod:… ╎ 18 @Base/boot.jl:430; eval ╎ ╎ 18 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 18 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 18 @Pkg/src/API.jl:147; test ╎ ╎ 18 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 18 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 18 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 18 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 18 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 18 …src/Operations.jl:2007; test ╎ ╎ ╎ 18 …src/Operations.jl:2063; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 18 …rc/Operations.jl:1837; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 18 …rc/Operations.jl:1845; #sandbox#115 ╎ ╎ ╎ ╎ 18 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 18 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 18 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 18 …/Operations.jl:1898; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 18 …/Operations.jl:1789; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 18 …Operations.jl:1931; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 18 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 18 …Operations.jl:2082; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 18 …perations.jl:2142; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 18 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 18 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 18 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 18 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 18 …ase/task.jl:1021; wait() 17╎ ╎ ╎ ╎ ╎ ╎ ╎ 18 …ase/task.jl:1012; poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:577 #1190 at ./Base.jl:617 jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 18078992 (Pool: 18078023; Big: 969); GC: 25 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#761 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67080.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jlcapi_uv_writecb_task_67543.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x7abf1336eaa6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:462 jfptr__atexit_69596.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 Content of `stderr`: ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 195 running 1 of 1 signal (10): User defined signal 1 gc_mark_obj8 at /source/src/gc.c:2113 gc_mark_outrefs at /source/src/gc.c:2882 [inlined] gc_mark_loop_serial_ at /source/src/gc.c:2938 gc_mark_loop_serial at /source/src/gc.c:2961 gc_mark_loop at /source/src/gc.c:3143 [inlined] _jl_gc_collect at /source/src/gc.c:3532 ijl_gc_collect at /source/src/gc.c:3895 gc at ./gcutils.jl:133 [inlined] gc at ./gcutils.jl:133 [inlined] gcscrub at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:5 [inlined] #_lineartrial#53 at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:187 _lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:181 unknown function (ip: 0x78140ce64dd6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #lineartrial#46 at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:51 [inlined] lineartrial at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:50 [inlined] #tune!#58 at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:299 tune! at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:288 [inlined] tune! at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:288 [inlined] macro expansion at /home/pkgeval/.julia/packages/BenchmarkTools/1i1mY/src/execution.jl:461 [inlined] #benchmark_tlsph#77 at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/benchmarks/smoothed_particle_hydrodynamics.jl:142 benchmark_tlsph at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/benchmarks/smoothed_particle_hydrodynamics.jl:120 unknown function (ip: 0x78140753888d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #plot_benchmarks#83 at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/benchmarks/plot.jl:72 plot_benchmarks at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/benchmarks/plot.jl:38 [inlined] #50 at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/test_util.jl:49 [inlined] RedirectStdStream at ./stream.jl:1464 #49 at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/test_util.jl:48 [inlined] #open#463 at ./io.jl:410 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 open at ./io.jl:407 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7814240ca082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7814240ca082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73523.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78142538a249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [195] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PointNeighbors/Oy2D3/test/benchmarks.jl:1 _ZNK4llvm13AttributeList9hasFnAttrENS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL17getCalledFunctionPKN4llvm5ValueERb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15getFreedOperandEPKNS_8CallBaseEPKNS_17TargetLibraryInfoE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm16InstCombinerImpl13visitCallInstERNS_8CallInstE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL31combineInstructionsOverFunctionRN4llvm8FunctionERNS_19InstructionWorklistEPNS_9AAResultsERNS_15AssumptionCacheERNS_17TargetLibraryInfoERNS_19TargetTransformInfoERNS_13DominatorTreeERNS_25OptimizationRemarkEmitterEPNS_18BlockFrequencyInfoEPNS_18ProfileSummaryInfoEjPNS_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15InstCombinePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] macro expansion at ./logging/logging.jl:353 [inlined] #warning_empty#43 at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 warning_empty at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1238 [inlined] #print#5 at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:244 [inlined] print at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:244 [inlined] print at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:244 [inlined] _peek_report at /source/usr/share/julia/stdlib/v1.11/Profile/src/Profile.jl:70 unknown function (ip: 0x781407551b2f) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] profile_printing_listener at ./Base.jl:579 #1190 at ./Base.jl:617 jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 497736316 (Pool: 497732589; Big: 3727); GC: 813 `benchmark_tlsph`: PkgEval terminated after 2728.51s: test duration exceeded the time limit