Package evaluation of PlanktonIndividuals on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T10:46:13.901


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.3s


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# Installation
#

Installing PlanktonIndividuals...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [dfeb4ede] + PlanktonIndividuals v0.7.5
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [79e6a3ab] + Adapt v4.3.0
  [a9b6321e] + Atomix v1.1.1
  [187b0558] + ConstructionBase v1.5.8
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [5789e2e9] + FileIO v1.17.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.5.12
  [63c18a36] + KernelAbstractions v0.9.34
  [1914dd2f] + MacroTools v0.5.15
  [bac558e1] + OrderedCollections v1.8.0
  [dfeb4ede] + PlanktonIndividuals v0.7.5
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [ae029012] + Requires v1.3.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [09ab397b] + StructArrays v0.7.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [013be700] + UnsafeAtomics v0.3.0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.18s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 31.53s


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# Testing
#

     Testing PlanktonIndividuals
      Status `/tmp/jl_vDUSO1/Project.toml`
  [79e6a3ab] Adapt v4.3.0
  [6e4b80f9] BenchmarkTools v1.6.0
  [a2441757] Coverage v1.6.1
  [033835bb] JLD2 v0.5.12
  [63c18a36] KernelAbstractions v0.9.34
  [cb8c808f] MeshArrays v0.3.20
  [dfeb4ede] PlanktonIndividuals v0.7.5
  [10745b16] Statistics v1.11.1
  [09ab397b] StructArrays v0.7.1
  [37e2e46d] LinearAlgebra v1.11.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [9e88b42a] Serialization v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_vDUSO1/Manifest.toml`
  [79e6a3ab] Adapt v4.3.0
  [a9b6321e] Atomix v1.1.1
  [6e4b80f9] BenchmarkTools v1.6.0
  [d1d4a3ce] BitFlags v0.1.9
  [81a5f4ea] CatViews v1.0.0
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.16.0
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [187b0558] ConstructionBase v1.5.8
  [a2441757] Coverage v1.6.1
  [c36e975a] CoverageTools v1.3.2
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.10.12
  [460bff9d] ExceptionUnwrapping v0.1.11
  [5789e2e9] FileIO v1.17.0
  [c27321d9] Glob v1.3.1
  [cd3eb016] HTTP v1.10.15
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.5.12
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [63c18a36] KernelAbstractions v0.9.34
  [e6f89c97] LoggingExtras v1.1.0
  [1914dd2f] MacroTools v0.5.15
  [739be429] MbedTLS v1.1.9
  [cb8c808f] MeshArrays v0.3.20
  [b8a86587] NearestNeighbors v0.4.21
  [4d8831e6] OpenSSL v1.4.3
  [bac558e1] OrderedCollections v1.8.0
  [69de0a69] Parsers v2.8.1
  [dfeb4ede] PlanktonIndividuals v0.7.5
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [ae029012] Requires v1.3.1
  [777ac1f9] SimpleBufferStream v1.2.0
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [09ab397b] StructArrays v0.7.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.5.2
  [1986cc42] Unitful v1.22.0
  [013be700] UnsafeAtomics v0.3.0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Precompiling MeshArrays...
   4089.7 ms  ✓ NearestNeighbors
   7588.4 ms  ✓ MeshArrays
  2 dependencies successfully precompiled in 12 seconds. 45 already precompiled.
Precompiling MeshArraysJLD2Ext...
   6525.5 ms  ✓ MeshArrays → MeshArraysJLD2Ext
  1 dependency successfully precompiled in 7 seconds. 53 already precompiled.
RegularRectilinearGrid{Float32, Periodic, Periodic, Bounded}
domain: x ∈ [0.0, 12.0], y ∈ [0.0, 12.0], z ∈ [0.0, -8.0]
topology (Tx, Ty, Tz):     (Periodic, Periodic, Bounded)
resolution (Nx, Ny, Nz):   (4, 6, 2)
halo size (Hx, Hy, Hz):    (2, 2, 2)
grid spacing (Δx, Δy, Δz): 3.0, 2.0, [min=4.0, max=4.0])
LatLonGrid{Float32, Periodic, Bounded, Bounded}
domain: x ∈ [-180.0, 180.0], y ∈ [-80.0, 80.0], z ∈ [0.0, -20.0]
topology (Tx, Ty, Tz):     (Periodic, Bounded, Bounded)
resolution (Nx, Ny, Nz):   (360, 160, 10)
halo size (Hx, Hy, Hz):    (2, 2, 2)
grid spacing (Δx, Δy, Δz): 1.0, 1.0, [min=2.0, max=2.0])
WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_3D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7.
WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8.
WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_0D_test.jl:11.
Test Summary:       | Pass  Total      Time
PlanktonIndividuals |  123    123  12m54.4s
     Testing PlanktonIndividuals tests passed 

Testing completed after 784.58s

PkgEval succeeded after 842.2s