Package evaluation of Pioneer on Julia 1.11.4 (a71dd056e0*) started at 2025-04-09T02:32:41.210 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.61s ################################################################################ # Installation # Installing Pioneer... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [585db54e] + Pioneer v0.1.9 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [4c555306] + ArrayLayouts v1.11.1 ⌅ [69666777] + Arrow v2.7.0 [31f734f8] + ArrowTypes v2.3.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [47718e42] + BioGenerics v0.1.5 [d1d4a3ce] + BitFlags v0.1.9 [c3b6d118] + BitIntegers v0.3.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [da1fd8a2] + CodeTracking v1.3.9 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [e30172f5] + Documenter v1.10.1 [35a29f4d] + DocumenterTools v0.1.20 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [8f5d6c58] + EzXML v1.2.1 [c2308a5c] + FASTX v2.1.7 [c87230d0] + FFMPEG v0.4.2 [7a1cc6ca] + FFTW v1.8.1 [442a2c76] + FastGaussQuadrature v1.0.2 [29a986be] + FastLapackInterface v2.0.4 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.13 [d7ba0133] + Git v1.3.1 [42e2da0e] + Grisu v1.0.2 [708ec375] + Gumbo v0.8.3 [cd3eb016] + HTTP v1.10.15 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v0.2.5 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.0 [1019f520] + JLFzf v0.1.10 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.9.42 [ef3ab10e] + KLU v0.6.0 [5ab0869b] + KernelDensity v0.6.9 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.7 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [5078a376] + LazyArrays v2.6.1 [9c8b4983] + LightXML v0.9.1 [d3d80556] + LineSearches v7.3.0 ⌅ [7ed4a6bd] + LinearSolve v2.39.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [bdcacae8] + LoopVectorization v0.12.172 [6f1432cf] + LoweredCodeUtils v3.1.0 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [2e0e35c7] + Moshi v0.3.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 ⌅ [e7bfaba1] + NumericalIntegration v0.2.0 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.16.0 [4d8831e6] + OpenSSL v1.4.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [3beb2ed1] + PDFmerger v0.3.2 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [585db54e] + Pioneer v0.1.9 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.11 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.0.19 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [49802e3a] + ProgressBars v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [731186ca] + RecursiveArrayTools v3.31.2 [f2c3362d] + RecursiveFactorization v0.2.23 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.7.3 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [322a6be2] + Sass v0.2.0 [0bca4576] + SciMLBase v2.82.1 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [a0a7dd2c] + SparseMatricesCSR v0.6.9 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 [860ef19b] + StableRNGs v1.0.2 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [f3b207a7] + StatsPlots v0.15.7 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [dc5dba14] + TZJData v1.5.0+2025b [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [8290d209] + ThreadingUtilities v0.5.2 [f269a46b] + TimeZones v1.21.3 ⌅ [3bb67fe8] + TranscodingStreams v0.10.10 [d5829a12] + TriangularSolve v0.2.1 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.22.0 [45397f5d] + UnitfulLatexify v1.6.4 [41fe7b60] + Unzip v0.2.0 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [cc8bc4a8] + Widgets v0.6.7 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [009559a3] + XGBoost v2.5.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [4ee394cb] + CUDA_Driver_jll v0.12.1+1 [76a88914] + CUDA_Runtime_jll v0.16.1+0 [83423d85] + Cairo_jll v1.18.4+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.6.5+0 ⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.0+2 [d2c73de3] + GR_jll v0.73.13+0 [78b55507] + Gettext_jll v0.21.0+0 [f8c6e375] + Git_jll v2.49.0+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [d4300ac3] + Libgcrypt_jll v1.11.1+0 [7e76a0d4] + Libglvnd_jll v1.7.0+0 [7add5ba3] + Libgpg_error_jll v1.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 [d3a379c0] + LittleCMS_jll v2.16.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.0.1+1 [e7412a2a] + Ogg_jll v1.3.5+1 [643b3616] + OpenJpeg_jll v2.5.4+0 [9bd350c2] + OpenSSH_jll v9.9.2+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 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Xorg_libXrender_jll v0.9.11+1 [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3 [cc61e674] + Xorg_libxkbfile_jll v1.1.2+1 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.4+0 [12413925] + Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] + Xorg_xcb_util_jll v0.4.0+1 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] + Xorg_xkbcomp_jll v1.4.6+1 [33bec58e] + Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [35ca27e7] + eudev_jll v3.2.9+0 [214eeab7] + fzf_jll v0.56.3+0 [1a1c6b14] + gperf_jll v3.1.1+1 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.11.0+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [36db933b] + libinput_jll v1.18.0+0 [b53b4c65] + libpng_jll v1.6.47+0 [47bcb7c8] + libsass_jll v3.6.6+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [009596ad] + mtdev_jll v1.1.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [d8fb68d0] + xkbcommon_jll v1.4.1+2 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 264.23s ################################################################################ # Testing # Testing Pioneer Status `/tmp/jl_jUTual/Project.toml` [c7e460c6] ArgParse v1.2.0 ⌅ [69666777] Arrow v2.7.0 [31f734f8] ArrowTypes v2.3.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.2 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [85a47980] Dictionaries v0.4.5 [31c24e10] Distributions v0.25.118 [e30172f5] Documenter v1.10.1 [35a29f4d] DocumenterTools v0.1.20 [8f5d6c58] EzXML v1.2.1 [c2308a5c] FASTX v2.1.7 [442a2c76] FastGaussQuadrature v1.0.2 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [a98d9a8b] Interpolations v0.15.1 ⌅ [033835bb] JLD2 v0.5.0 [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.1 ⌅ [7ed4a6bd] LinearSolve v2.39.1 [bdcacae8] LoopVectorization v0.12.172 [442fdcdd] Measures v0.3.2 ⌅ [e7bfaba1] NumericalIntegration v0.2.0 [429524aa] Optim v1.12.0 [3beb2ed1] PDFmerger v0.3.2 [585db54e] Pioneer v0.1.9 [91a5bcdd] Plots v1.40.11 [f27b6e38] Polynomials v4.0.19 [54e16d92] PrettyPrinting v0.4.2 [49802e3a] ProgressBars v1.5.1 [295af30f] Revise v3.7.3 [91c51154] SentinelArrays v1.4.8 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [f3b207a7] StatsPlots v0.15.7 [bd369af6] Tables v1.12.0 [009559a3] XGBoost v2.5.1 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jUTual/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 ⌅ [69666777] Arrow v2.7.0 [31f734f8] ArrowTypes v2.3.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [47718e42] BioGenerics v0.1.5 [d1d4a3ce] BitFlags v0.1.9 [c3b6d118] BitIntegers v0.3.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v1.3.9 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.1 [35a29f4d] DocumenterTools v0.1.20 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [8f5d6c58] EzXML v1.2.1 [c2308a5c] FASTX v2.1.7 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.8.1 [442a2c76] FastGaussQuadrature v1.0.2 [29a986be] FastLapackInterface v2.0.4 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase 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Xorg_libXrender_jll v0.9.11+1 [14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] Xorg_libxcb_jll v1.17.0+3 [cc61e674] Xorg_libxkbfile_jll v1.1.2+1 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.6+1 [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [35ca27e7] eudev_jll v3.2.9+0 [214eeab7] fzf_jll v0.56.3+0 [1a1c6b14] gperf_jll v3.1.1+1 [a4ae2306] libaom_jll v3.11.0+0 [0ac62f75] libass_jll v0.15.2+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.11.0+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 [36db933b] libinput_jll v1.18.0+0 [b53b4c65] libpng_jll v1.6.47+0 [47bcb7c8] libsass_jll v3.6.6+0 [f27f6e37] libvorbis_jll v1.3.7+2 [009596ad] mtdev_jll v1.1.6+0 [1317d2d5] oneTBB_jll v2022.0.0+0 ⌅ [1270edf5] x264_jll v2021.5.5+0 ⌅ [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling DataFrames... 79753.1 ms ✓ DataFrames 1 dependency successfully precompiled in 82 seconds. 32 already precompiled. Precompiling FASTX... 19705.0 ms ✓ Automa 21440.3 ms ✓ FASTX 2 dependencies successfully precompiled in 41 seconds. 10 already precompiled. Precompiling LinearSolve... 4357.7 ms ✓ RecursiveArrayTools 2392.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 28640.3 ms ✓ SciMLBase 2977.9 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 53326.0 ms ✓ LinearSolve 7339.3 ms ✓ LinearSolve → LinearSolveRecursiveArrayToolsExt 6 dependencies successfully precompiled in 102 seconds. 127 already precompiled. Precompiling TimeZonesRecipesBaseExt... 2842.8 ms ✓ TimeZones → TimeZonesRecipesBaseExt 1 dependency successfully precompiled in 3 seconds. 27 already precompiled. Precompiling Optim... 1953.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2487.9 ms ✓ NLSolversBase 5185.5 ms ✓ LineSearches 7095.3 ms ✓ Optim 4 dependencies successfully precompiled in 20 seconds. 65 already precompiled. Precompiling SpecialFunctionsExt... 1742.8 ms ✓ ColorVectorSpace → SpecialFunctionsExt 3206.2 ms ✓ LoopVectorization → SpecialFunctionsExt 2 dependencies successfully precompiled in 6 seconds. 48 already precompiled. Precompiling RecursiveArrayToolsForwardDiffExt... 2164.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 50 already precompiled. Precompiling ForwardDiffExt... 4074.3 ms ✓ LoopVectorization → ForwardDiffExt 1 dependency successfully precompiled in 5 seconds. 56 already precompiled. Precompiling Plots... 6910.0 ms ✓ ColorSchemes 28724.3 ms ✓ HTTP 19836.8 ms ✓ PlotUtils 9657.4 ms ✓ PlotThemes 8787.1 ms ✓ RecipesPipeline 124483.0 ms ✓ Plots 18217.5 ms ✓ Plots → UnitfulExt 7 dependencies successfully precompiled in 220 seconds. 180 already precompiled. 1 dependency had output during precompilation: ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: IOError: connect: connection refused (ECONNREFUSED) │ │ Stacktrace: │ │ [1] getconnection(::Type{Sockets.TCPSocket}, host::SubString{String}, port::SubString{String}; keepalive::Bool, readtimeout::Int64, kw::@Kwargs{require_ssl_verification::Bool, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/4AUPl/src/Connections.jl:531 │ │ [2] getconnection │ │ @ ~/.julia/packages/HTTP/4AUPl/src/Connections.jl:508 [inlined] │ │ [3] getconnection(::Type{OpenSSL.SSLStream}, host::SubString{String}, port::SubString{String}; kw::@Kwargs{require_ssl_verification::Bool, keepalive::Bool, readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/4AUPl/src/Connections.jl:585 │ │ [4] getconnection │ │ @ ~/.julia/packages/HTTP/4AUPl/src/Connections.jl:578 [inlined] │ │ [5] #10 │ │ @ ~/.julia/packages/HTTP/4AUPl/src/Connections.jl:467 [inlined] │ │ [6] macro expansion │ │ @ ~/.julia/packages/ConcurrentUtilities/ofY4K/src/try_with_timeout.jl:92 [inlined] │ │ [7] (::ConcurrentUtilities.var"#2#4"{Any, Channel{Any}, HTTP.Connections.var"#10#13"{OpenSSL.SSLStream, Bool, Bool, @Kwargs{readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}, SubString{String}, SubString{String}}, Timer})() │ │ @ ConcurrentUtilities ~/.julia/packages/ConcurrentUtilities/ofY4K/src/ConcurrentUtilities.jl:10 │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#106#108"{Base.var"#106#107#109"{ExponentialBackOff, HTTP.RetryRequest.var"#2#5"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:312 │ │ [4] (::HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RetryRequest.jl:75 │ │ [5] manageretries │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [6] (::HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/CookieRequest.jl:42 │ │ [7] managecookies │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/HeadersRequest.jl:71 │ │ [9] defaultheaders │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [10] (::HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RedirectRequest.jl:25 │ │ [11] redirects │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [12] (::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/4AUPl/src/clientlayers/MessageRequest.jl:35 │ │ [13] makerequest │ │ @ ~/.julia/packages/HTTP/4AUPl/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:457 │ │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:455 │ │ [16] #request#20 │ │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:315 [inlined] │ │ [17] request (repeats 2 times) │ │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:313 [inlined] │ │ [18] get │ │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:518 [inlined] │ │ [19] macro expansion │ │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:36 [inlined] │ │ [20] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] │ │ [21] (::HTTP.var"#51#54"{String})() │ │ @ HTTP ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:35 │ │ [22] withenv(::HTTP.var"#51#54"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:34 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] │ │ [25] top-level scope │ │ @ ~/.julia/packages/HTTP/4AUPl/src/precompile.jl:4 │ │ [26] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:557 │ │ [27] include │ │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:1 [inlined] │ │ [28] top-level scope │ │ @ ~/.julia/packages/HTTP/4AUPl/src/HTTP.jl:636 │ │ [29] include │ │ @ ./Base.jl:557 [inlined] │ │ [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:2881 │ │ [31] top-level scope │ │ @ stdin:6 │ │ [32] eval │ │ @ ./boot.jl:430 [inlined] │ │ [33] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2734 │ │ [34] include_string │ │ @ ./loading.jl:2744 [inlined] │ │ [35] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:321 │ │ [36] _start() │ └ @ Base ./client.jl:531 └ Precompiling FileIOExt... 5229.9 ms ✓ FileIO → HTTPExt 18847.1 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 28 seconds. 188 already precompiled. Precompiling PolynomialsChainRulesCoreExt... 2793.3 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1 dependency successfully precompiled in 3 seconds. 24 already precompiled. Precompiling PDFmerger... 1656.3 ms ✓ Poppler_jll 1756.0 ms ✓ PDFmerger 2 dependencies successfully precompiled in 4 seconds. 63 already precompiled. Precompiling StatsPlots... 4561.7 ms ✓ Widgets 962.5 ms ✓ Distances → DistancesChainRulesCoreExt 4102.8 ms ✓ NearestNeighbors 9770.4 ms ✓ Distributions 4420.9 ms ✓ Clustering 6138.4 ms ✓ Distributions → DistributionsTestExt 6287.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 7245.6 ms ✓ MultivariateStats 8265.5 ms ✓ KernelDensity 29302.8 ms ✓ StatsPlots 10 dependencies successfully precompiled in 98 seconds. 243 already precompiled. Precompiling PolynomialsFFTWExt... 4144.4 ms ✓ Polynomials → PolynomialsFFTWExt 1 dependency successfully precompiled in 5 seconds. 47 already precompiled. Precompiling XGBoost... 6447.9 ms ✓ XGBoost 1 dependency successfully precompiled in 9 seconds. 51 already precompiled. WARNING: Method definition load_detailed_frags(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:197 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:308. WARNING: Method definition getKnots(Main.SplineFragmentLookup{N, M, T} where T<:AbstractFloat where M where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:566 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:604. WARNING: Method definition getProteomeIdentifiers(Main.BasicLibraryPrecursors) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:697 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:698. WARNING: Method definition getSequence(Main.BasicLibraryPrecursors) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:700 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/structs/LibraryIon.jl:701. WARNING: Method definition fit_nce_model(Main.PiecewiseNceModel{T}, AbstractArray{T, 1} where T, AbstractArray{T, 1} where T, AbstractArray{T, 1} where T, Real) where {T<:AbstractFloat} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/utils/ML/piecewiseLinearFunction.jl:49 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/utils/ML/piecewiseLinearFunction.jl:144. WARNING: Method definition (::Type{Main.StandardTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:3 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.MassErrEstimationStrategy})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.RTIndexedTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:5 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.QuadEstimationTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:6 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PartialPrecCapture})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:21 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.FullPrecCapture})() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:30 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition ensureTransitionCapacity!(Array{Main.DetailedFrag{Float32}, 1}, Int64, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:34 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorProperties(UInt32, AbstractArray{Float32, N} where N, AbstractArray{UInt8, N} where N, AbstractArray{UInt8, N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:44 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition selectTransitions!(Array{Main.DetailedFrag{Float32}, 1}, Main.TransitionSelectionStrategy, Main.PrecEstimation, Any...) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:59 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.selectTransitions!), Array{Main.DetailedFrag{Float32}, 1}, Main.TransitionSelectionStrategy, Main.PrecEstimation, Any...) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:59 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PioneerParameters})(NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/parseParams.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PioneerParameters})(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/parseParams.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition merge_with_globals(NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/parseParams.jl:15 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition parse_pioneer_parameters(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/parseParams.jl:27 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.ArrowTableReference{N} where N})(Array{String, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:82 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.ArrowTableReference{N} where N})(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:105 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SimpleLibrarySearch{I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)}})(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:133 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)})(Array{Main.FragmentMatch{Float32}, 1}, Array{Main.FragmentMatch{Float32}, 1}, Array{Main.FragmentMatch{Float32}, 1}, Main.ArrayDict{UInt32, UInt16}, Main.Counter{UInt32, UInt8}, Array{Main.DetailedFrag{Float32}, 1}, I, Array{Main.SimpleScoredPSM{Float32, Float16}, 1}, Array{Main.SimpleUnscoredPSM{Float32}, 1}, Array{Main.SpectralScoresSimple{Float16}, 1}, Array{Main.ComplexScoredPSM{Float32, Float16}, 1}, Array{Main.ComplexUnscoredPSM{Float32}, 1}, Array{Main.SpectralScoresComplex{Float16}, 1}, Main.SparseArray{Ti, T} where T<:AbstractFloat where Ti<:Integer, Array{UInt32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}) where {I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:133 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N})(L, AbstractArray{var"#s59", 1} where var"#s59"<:Main.SearchDataStructures, M, Int64, Int64, Int64) where {L<:Main.SpectralLibrary, M<:Main.MassSpecDataReference} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:198 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMSData(Main.MassSpecDataReference, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:228 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMSData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:229 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileName(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:230 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition enumerate(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:233 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFileIdToName(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:238 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFirstPassPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:239 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSecondPassPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:240 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:241 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingProteins(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:242 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndex(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:243 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFailedIndicator(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:244 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileNames(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:245 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFilePaths(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:247 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFileIdToName(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:249 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFirstPassPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:250 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSecondPassPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:251 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:252 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingProteins(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:253 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndex(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:254 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFileIdToName!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:258 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFirstPassPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:259 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setSecondPassPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:260 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPassingPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:261 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPassingProteins!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:262 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIndex!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:263 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFailedIndicator!(Main.ArrowTableReference{N} where N, Int64, Bool) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:264 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFragErrQuantile(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:267 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFragTolPpm(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:268 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIRTTol(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:269 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsotopeErrBounds(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:270 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinFractionTransmitted(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:271 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxBestRank(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:272 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxFragRank(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:273 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxPresearchIters(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:274 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxQVal(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:275 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinFragCount(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:276 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinIndexSearchScore(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:277 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinLog2MatchedRatio(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:278 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinPsms(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:279 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinSpectralContrast(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:280 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinTopNofM(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:281 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNFragIsotopes(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:282 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getOutlierThreshold(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:283 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecEstimation(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:284 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSampleRate(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:285 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpecOrder(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:286 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSplineDegree(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:287 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSplineNKnots(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:288 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonMatches(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:293 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonMisses(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:294 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrMatches(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:295 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIdToCol(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:296 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:297 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonTemplates(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:298 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsoSplines(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:299 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getScoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:300 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getUnscoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:301 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpectralScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:302 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexScoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:303 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexUnscoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:304 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexSpectralScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:305 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getHs(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:306 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecIds(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:307 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getWeights(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:308 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getResiduals(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:309 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsotopes(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:310 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorTransmission(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:311 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getTuningResults(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:312 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getTempWeights(Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:313 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorWeights(Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:314 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNThreads(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:322 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNPrecursors(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:323 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getBufferSize(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:324 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassSpecData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:325 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpecLib(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:326 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSearchData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:327 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getDataOutDir(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:328 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getQcPlotfolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:329 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtAlignPlotFolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:330 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrPlotFolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:331 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileName(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:332 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIrtRtMap(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:333 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtMap(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:334 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorDict(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:335 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndexPaths(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:336 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIrtErrors(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:337 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getHuberDelta(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:338 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getQuadTransmissionModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:345 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setQuadTransmissionModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.QuadTransmissionModel) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:355 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrorModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:362 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setMassErrorModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.MassErrorModel{T} where T<:AbstractFloat) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:371 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:378 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:391 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNceModelModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:400 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setNceModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.NceModel{T} where T<:AbstractFloat) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:409 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setIrtRtMap!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Main.RtConversionModel, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:410 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIrtMap!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Main.RtConversionModel, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:413 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPrecursorDict!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Dictionaries.Dictionary{UInt32, NamedTuple{(:best_prob, :best_ms_file_idx, :best_scan_idx, :best_irt, :mean_irt, :var_irt, :n, :mz), Tuple{Float32, UInt32, UInt32, Float32, Union{Base.Missing, Float32}, Union{Base.Missing, Float32}, Union{Base.Missing, UInt16}, Float32}}}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:416 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIndexPaths!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Array{String, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:419 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setHuberDelta!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Float32) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:420 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setIrtErrors!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Dictionaries.Dictionary{Int64, Float32}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:421 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition collectFragErrs(Array{M, 1}, Array{M, 1}, Int64, Int64) where {M<:Main.MatchIon{Float32}} in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/SearchMethods/ParameterTuningSearch/utils.jl:299 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/LibrarySearch.jl:429. WARNING: Method definition importScripts() in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/importScripts.jl:1 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/importScripts.jl:1. WARNING: Method definition sort_fragments!(DataFrames.DataFrame) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/fragments/fragment_predict.jl:240 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/fragments/fragment_predict.jl:244. WARNING: Method definition parseMods(AbstractString) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/WriteOutputs/writeCSVTables.jl:1 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/utils/get_mz.jl:73. WARNING: Method definition (::Type{Main.InvalidParametersError})(String, Base.Dict{String, Any}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/paramsChecks.jl:4 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/utils/check_params.jl:2. WARNING: Method definition (::Type{Main.InvalidParametersError})(Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/SearchDIA/ParseInputs/paramsChecks.jl:4 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/utils/check_params.jl:2. WARNING: Method definition matchVarMods(String, Array{NamedTuple{(:p, :r), Tuple{Base.Regex, String}}, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/BuildSpecLib/utils/parse_mods.jl:30 overwritten at /home/pkgeval/.julia/packages/Pioneer/5nZhG/src/Routines/ParseSpecLib.jl:100. dir /home/pkgeval/.julia/packages/Pioneer/5nZhG/test 0.0%┣ ┫ 0/120 [00:00<00:-1, -0s/it]  0.8%┣▍ ┫ 1/120 [00:01