Package evaluation of PhyloPickMe on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T19:03:27.547


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.9s


################################################################################
# Installation
#

Installing PhyloPickMe...
   Resolving package versions...
   Installed PhyloPickMe ─ v1.0.9
    Updating `~/.julia/environments/v1.11/Project.toml`
  [0dfd6e21] + PhyloPickMe v1.0.9
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.42
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [67c07d97] + Automa v1.1.0
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.1.3
  [fa961155] + CEnum v0.5.0
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [861a8166] + Combinatorics v1.0.2
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.5.8
  [6add18c4] + ContextVariablesX v0.1.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
  [c2308a5c] + FASTX v2.1.7
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [c0e83750] + FastPow v0.1.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] + InlineStrings v1.4.3
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b14d175d] + JuliaVariables v0.2.4
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.15
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [76087f3c] + NLopt v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
  [69de0a69] + Parsers v2.8.1
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [0dfd6e21] + PhyloPickMe v1.0.9
  [2dfb63ee] + PooledArrays v1.4.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [08abe8d2] + PrettyTables v2.4.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [fdea26ae] + SIMD v3.7.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.4.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [7200193e] + Twiddle v1.1.2
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [079eb43e] + NLopt_jll v2.10.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.25s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 51.0s


################################################################################
# Testing
#

     Testing PhyloPickMe
      Status `/tmp/jl_30Yqmy/Project.toml`
  [336ed68f] CSV v0.10.15
  [a93c6f00] DataFrames v1.7.0
  [8bb1440f] DelimitedFiles v1.9.1
  [cc61a311] FLoops v0.2.2
  [c0e83750] FastPow v0.1.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [0dfd6e21] PhyloPickMe v1.0.9
  [10745b16] Statistics v1.11.1
  [ade2ca70] Dates v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [a63ad114] Mmap v1.11.0
  [44cfe95a] Pkg v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_30Yqmy/Manifest.toml`
  [7d9f7c33] Accessors v0.1.42
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [67c07d97] Automa v1.1.0
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.4.1
  [3c28c6f8] BioSymbols v5.1.3
  [fa961155] CEnum v0.5.0
  [336ed68f] CSV v0.10.15
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.0.2
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [187b0558] ConstructionBase v1.5.8
  [6add18c4] ContextVariablesX v0.1.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [c2308a5c] FASTX v2.1.7
  [cc61a311] FLoops v0.2.2
  [b9860ae5] FLoopsBase v0.1.1
  [c0e83750] FastPow v0.1.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
⌅ [d9f16b24] Functors v0.4.12
  [38e38edf] GLM v1.9.0
  [34004b35] HypergeometricFunctions v0.3.28
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.3
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b14d175d] JuliaVariables v0.2.4
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.15
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [76087f3c] NLopt v1.1.3
  [71a1bf82] NameResolution v0.1.5
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
  [69de0a69] Parsers v2.8.1
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [0dfd6e21] PhyloPickMe v1.0.9
  [2dfb63ee] PooledArrays v1.4.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [8162dcfd] PrettyPrint v0.2.0
  [08abe8d2] PrettyTables v2.4.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [fdea26ae] SIMD v3.7.1
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [171d559e] SplittablesBase v0.1.15
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [3eaba693] StatsModels v0.7.4
  [892a3eda] StringManipulation v0.4.1
  [354b36f9] StringViews v1.3.4
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [28d57a85] Transducers v0.4.84
  [7200193e] Twiddle v1.1.2
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [079eb43e] NLopt_jll v2.10.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Precompiling PhyloPickMe...
  21853.0 ms  ✓ PhyloPickMe
  1 dependency successfully precompiled in 26 seconds. 153 already precompiled.
Reading in trees, looking at 58905 quartets in each...
0+---------------+100%
  ***************
Test Summary:         | Pass  Total  Time
File comparison tests |    1      1  0.0s
     Testing PhyloPickMe tests passed 

Testing completed after 125.97s

PkgEval succeeded after 201.78s