Package evaluation of Pfam on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T09:37:25.928 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.5s ################################################################################ # Installation # Installing Pfam... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [275cd14a] + Pfam v2.0.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [692b3bcd] + JLLWrappers v1.7.0 [275cd14a] + Pfam v2.0.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [be1be57a] + Gzip_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 Installation completed after 2.21s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 13.37s ################################################################################ # Testing # Testing Pfam Status `/tmp/jl_DZYoDh/Project.toml` ⌅ [4c88cf16] Aqua v0.7.4 [275cd14a] Pfam v2.0.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_DZYoDh/Manifest.toml` ⌅ [4c88cf16] Aqua v0.7.4 [34da2185] Compat v4.16.0 [692b3bcd] JLLWrappers v1.7.0 [275cd14a] Pfam v2.0.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [be1be57a] Gzip_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Skipping Base.active_repl Skipping Base.active_repl_backend Skipping Base.cwstring Test Summary: | Pass Total Time aqua | 9 9 28.8s Method ambiguity | 1 1 7.7s Unbound type parameters | 1 1 0.2s Undefined exports | 1 1 0.1s Compare Project.toml and test/Project.toml | 1 1 0.5s Stale dependencies | 1 1 4.5s Compat bounds | 1 1 1.8s Project.toml formatting | 2 2 1.5s Piracy | 1 1 0.2s [ Info: PFAM directory /tmp/jl_dg4Ph1 set. [ Info: Pfam version 35.0 set. [ Info: Downloading to /tmp/jl_dg4Ph1/35.0/pdbmap ... Downloaded (bytes): 0 Time: 0:00:07 Downloaded (bytes): 0 Time: 0:00:08 Downloaded (bytes): 7750 Time: 0:00:08 Downloaded (bytes): 207750 Time: 0:00:09 Downloaded (bytes): 607750 Time: 0:00:09 Downloaded (bytes): 1743750 Time: 0:00:09[ Info: Downloading to /tmp/jl_dg4Ph1/alignment_files/PF00013.alignment.full.stk ... Downloaded (bytes): 0 Time: 0:00:00 Downloaded (bytes): 0 Time: 0:00:00 Downloaded (bytes): 0 Time: 0:00:00 Downloaded (bytes): 0 Time: 0:00:01 Downloaded (bytes): 0 Time: 0:00:01 Downloaded (bytes): 32087 Time: 0:00:02 Downloaded (bytes): 99416 Time: 0:00:02 Downloaded (bytes): 176423 Time: 0:00:02 Downloaded (bytes): 258398 Time: 0:00:02 Downloaded (bytes): 340373 Time: 0:00:02 Downloaded (bytes): 422348 Time: 0:00:02 Downloaded (bytes): 504323 Time: 0:00:02 Downloaded (bytes): 586298 Time: 0:00:02 Downloaded (bytes): 668273 Time: 0:00:02 Downloaded (bytes): 750248 Time: 0:00:02 Downloaded (bytes): 832223 Time: 0:00:03 Downloaded (bytes): 914198 Time: 0:00:03 Downloaded (bytes): 996173 Time: 0:00:03 Downloaded (bytes): 1078148 Time: 0:00:03 Downloaded (bytes): 1192913 Time: 0:00:03 Downloaded (bytes): 1274888 Time: 0:00:03 Downloaded (bytes): 1356863 Time: 0:00:03 Downloaded (bytes): 1438838 Time: 0:00:03 Downloaded (bytes): 1520813 Time: 0:00:03 Downloaded (bytes): 1635578 Time: 0:00:04 Downloaded (bytes): 1717553 Time: 0:00:04 Downloaded (bytes): 1832318 Time: 0:00:04 Downloaded (bytes): 1914293 Time: 0:00:04 Downloaded (bytes): 2029058 Time: 0:00:04 Downloaded (bytes): 2111033 Time: 0:00:04 Downloaded (bytes): 2225798 Time: 0:00:04 Downloaded (bytes): 2307773 Time: 0:00:04 Downloaded (bytes): 2406143 Time: 0:00:05 Downloaded (bytes): 2504513 Time: 0:00:05 Downloaded (bytes): 2602883 Time: 0:00:05 Downloaded (bytes): 2750438 Time: 0:00:05 Downloaded (bytes): 2832413 Time: 0:00:05 Downloaded (bytes): 2897993 Time: 0:00:05 Downloaded (bytes): 2996363 Time: 0:00:05 Downloaded (bytes): 3094733 Time: 0:00:06 Downloaded (bytes): 3193103 Time: 0:00:06 Downloaded (bytes): 3291473 Time: 0:00:06 Downloaded (bytes): 3389843 Time: 0:00:06 Downloaded (bytes): 3488213 Time: 0:00:06 Downloaded (bytes): 3586583 Time: 0:00:06 Downloaded (bytes): 3750533 Time: 0:00:06 Downloaded (bytes): 3816113 Time: 0:00:06 Downloaded (bytes): 3898088 Time: 0:00:07 Downloaded (bytes): 3980063 Time: 0:00:07 Downloaded (bytes): 4094828 Time: 0:00:07 Downloaded (bytes): 4193198 Time: 0:00:07 Downloaded (bytes): 4307963 Time: 0:00:07 Downloaded (bytes): 4455518 Time: 0:00:07 Downloaded (bytes): 4521098 Time: 0:00:07 Downloaded (bytes): 4619468 Time: 0:00:08 Downloaded (bytes): 4717838 Time: 0:00:08 Downloaded (bytes): 4783418 Time: 0:00:08 Downloaded (bytes): 4865393 Time: 0:00:08 Downloaded (bytes): 4947368 Time: 0:00:08 Downloaded (bytes): 5062133 Time: 0:00:08 Downloaded (bytes): 5144108 Time: 0:00:08 Downloaded (bytes): 5258873 Time: 0:00:08 Downloaded (bytes): 5340848 Time: 0:00:09 Downloaded (bytes): 5455613 Time: 0:00:09 Downloaded (bytes): 5537588 Time: 0:00:09 Downloaded (bytes): 5652353 Time: 0:00:09 Downloaded (bytes): 5734328 Time: 0:00:09 Downloaded (bytes): 5816303 Time: 0:00:09 Downloaded (bytes): 5898278 Time: 0:00:09 Downloaded (bytes): 5931068 Time: 0:00:09 Downloaded (bytes): 6078623 Time: 0:00:10 Downloaded (bytes): 6160598 Time: 0:00:10 Downloaded (bytes): 6258968 Time: 0:00:10 Downloaded (bytes): 6357338 Time: 0:00:10 Downloaded (bytes): 6455708 Time: 0:00:10 Downloaded (bytes): 6554078 Time: 0:00:10 Downloaded (bytes): 6652448 Time: 0:00:10 Downloaded (bytes): 6750818 Time: 0:00:10 Downloaded (bytes): 6849188 Time: 0:00:10 Downloaded (bytes): 6947558 Time: 0:00:11 Downloaded (bytes): 7045928 Time: 0:00:11 Downloaded (bytes): 7144298 Time: 0:00:11 Downloaded (bytes): 7242668 Time: 0:00:11 Downloaded (bytes): 7357433 Time: 0:00:11 Downloaded (bytes): 7504988 Time: 0:00:11 Downloaded (bytes): 7586963 Time: 0:00:11 Downloaded (bytes): 7652543 Time: 0:00:12 Downloaded (bytes): 7750913 Time: 0:00:12 Downloaded (bytes): 7882073 Time: 0:00:12 Downloaded (bytes): 7964048 Time: 0:00:12 Downloaded (bytes): 8029628 Time: 0:00:12 Downloaded (bytes): 8127998 Time: 0:00:12 Downloaded (bytes): 8209973 Time: 0:00:12 Downloaded (bytes): 8291948 Time: 0:00:12 Downloaded (bytes): 8390318 Time: 0:00:13 Downloaded (bytes): 8488688 Time: 0:00:13 Downloaded (bytes): 8554268 Time: 0:00:13 Downloaded (bytes): 8669033 Time: 0:00:13 Downloaded (bytes): 8751008 Time: 0:00:13 Downloaded (bytes): 8865773 Time: 0:00:13 Downloaded (bytes): 8947748 Time: 0:00:13 Downloaded (bytes): 9046118 Time: 0:00:13 Downloaded (bytes): 9144488 Time: 0:00:14 Downloaded (bytes): 9226463 Time: 0:00:14 Downloaded (bytes): 9341228 Time: 0:00:14 Downloaded (bytes): 9472388 Time: 0:00:14 Downloaded (bytes): 9537968 Time: 0:00:14 Downloaded (bytes): 9619943 Time: 0:00:14 Downloaded (bytes): 9734708 Time: 0:00:14 Downloaded (bytes): 9865868 Time: 0:00:14 Downloaded (bytes): 9947843 Time: 0:00:15 Downloaded (bytes): 10029818 Time: 0:00:15 Downloaded (bytes): 10111793 Time: 0:00:15 Downloaded (bytes): 10177373 Time: 0:00:15 Downloaded (bytes): 10177373 Time: 0:00:15 Downloaded (bytes): 10193768 Time: 0:00:15 Downloaded (bytes): 10292138 Time: 0:00:15 Downloaded (bytes): 10406903 Time: 0:00:15 Downloaded (bytes): 10521668 Time: 0:00:16 Downloaded (bytes): 10603643 Time: 0:00:16 Downloaded (bytes): 10702013 Time: 0:00:16 Downloaded (bytes): 10800383 Time: 0:00:16 Downloaded (bytes): 10882358 Time: 0:00:16 Downloaded (bytes): 10997123 Time: 0:00:16 Downloaded (bytes): 11079098 Time: 0:00:16 Downloaded (bytes): 11144678 Time: 0:00:16 Downloaded (bytes): 11226653 Time: 0:00:17 Downloaded (bytes): 11308628 Time: 0:00:17 Downloaded (bytes): 11423393 Time: 0:00:17 Downloaded (bytes): 11505368 Time: 0:00:17 Downloaded (bytes): 11570948 Time: 0:00:17 Downloaded (bytes): 11685713 Time: 0:00:17 Downloaded (bytes): 11767688 Time: 0:00:17 Downloaded (bytes): 11882453 Time: 0:00:17 Downloaded (bytes): 11964428 Time: 0:00:17 Downloaded (bytes): 12046403 Time: 0:00:18 Downloaded (bytes): 12111983 Time: 0:00:18 Downloaded (bytes): 12193958 Time: 0:00:18 Downloaded (bytes): 12259538 Time: 0:00:18 Downloaded (bytes): 12341513 Time: 0:00:18 Downloaded (bytes): 12456278 Time: 0:00:18 Downloaded (bytes): 12538253 Time: 0:00:18 Downloaded (bytes): 12653018 Time: 0:00:18 Downloaded (bytes): 12734993 Time: 0:00:19 Downloaded (bytes): 12833363 Time: 0:00:19 Downloaded (bytes): 12931733 Time: 0:00:19 Downloaded (bytes): 13030103 Time: 0:00:19 Downloaded (bytes): 13128473 Time: 0:00:19 Testing Pfam tests passed Testing completed after 51.28s PkgEval succeeded after 103.76s