Package evaluation of PartiallyObservedMarkovProcesses on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:29:47.541 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.74s ################################################################################ # Installation # Installing PartiallyObservedMarkovProcesses... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [32433216] + PartiallyObservedMarkovProcesses v0.4.6 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [69de0a69] + Parsers v2.8.1 [32433216] + PartiallyObservedMarkovProcesses v0.4.6 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 152.58s ################################################################################ # Testing # Testing PartiallyObservedMarkovProcesses Status `/tmp/jl_ix2hBl/Project.toml` [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.118 [32433216] PartiallyObservedMarkovProcesses v0.4.6 [6f49c342] RCall v0.14.6 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ix2hBl/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [8f4d0f93] Conda v1.10.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [69de0a69] Parsers v2.8.1 [32433216] PartiallyObservedMarkovProcesses v0.4.6 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [6f49c342] RCall v0.14.6 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [1b915085] WinReg v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling RCall... 1555.1 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 6303.9 ms ✓ StatsModels 2 dependencies successfully precompiled in 9 seconds. 76 already precompiled. Gompertz model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/gompertz.jl:7 Got exception outside of a @test REvalError: Error in library(tidyverse) : there is no package called ‘tidyverse’ SIR model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/sir.jl:7 Got exception outside of a @test REvalError: Error in library(tidyverse) : there is no package called ‘tidyverse’ PartiallyObservedMarkovProcesses.jl simulations (Rosenzweig-MacArthur) 0.065688 seconds (610.96 k allocations: 28.082 MiB, 35.20% gc time) 0.032587 seconds (610.96 k allocations: 28.082 MiB) 0.049215 seconds (610.96 k allocations: 28.082 MiB, 31.97% gc time) Rosenzweig-MacArthur model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/rmca.jl:7 Got exception outside of a @test REvalError: Error in library(tidyverse) : there is no package called ‘tidyverse’ 0.548189 seconds (1.01 M allocations: 49.415 MiB, 5.40% gc time, 96.48% compilation time) 0.019817 seconds (105.86 k allocations: 2.758 MiB) 2.295217 seconds (998.75 k allocations: 48.913 MiB, 99.06% compilation time) 0.018415 seconds (105.85 k allocations: 2.757 MiB) speed trials: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/speed1.jl:8 Got exception outside of a @test REvalError: Error in library(pomp) : there is no package called ‘pomp’ 3.293948 seconds (24.23 M allocations: 957.790 MiB, 24.64% gc time, 16.21% compilation time) 3.952961 seconds (24.06 M allocations: 948.396 MiB, 48.62% gc time) 3.769148 seconds (24.02 M allocations: 1008.125 MiB, 43.64% gc time) 4.849692 seconds (24.02 M allocations: 1008.122 MiB, 57.31% gc time) Brownian motion: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/brown.jl:9 Got exception outside of a @test REvalError: Error in library(tidyverse) : there is no package called ‘tidyverse’ Test Summary: | Pass Error Total Time PartiallyObservedMarkovProcesses.jl | 124 5 129 2m34.7s constructor and workhorses | 43 43 15.4s error messages | 19 19 13.2s val_array | 4 4 0.8s helpers | 20 20 4.2s melt | 11 11 5.5s Gompertz model | 12 1 13 23.0s SIR model | 1 1 0.0s Rosenzweig-MacArthur model | 1 1 2 4.7s pfilter | 13 13 14.4s speed trials | 1 1 0.0s Brownian motion | 1 1 2 26.5s ERROR: LoadError: Some tests did not pass: 124 passed, 0 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/P66fs/test/runtests.jl:4 Testing failed after 170.3s ERROR: LoadError: Package PartiallyObservedMarkovProcesses errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 355.33s: package tests unexpectedly errored