Package evaluation of OpenSMILES on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T09:52:49.070 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.07s ################################################################################ # Installation # Installing OpenSMILES... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [29c4880b] + OpenSMILES v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.1.0 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [093fc24a] + LightGraphs v1.3.5 [1914dd2f] + MacroTools v0.5.15 [29c4880b] + OpenSMILES v0.1.0 [bac558e1] + OrderedCollections v1.8.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 1.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 34.21s ################################################################################ # Testing # Testing OpenSMILES Status `/tmp/jl_GcjXpk/Project.toml` [093fc24a] LightGraphs v1.3.5 [29c4880b] OpenSMILES v0.1.0 [47aef6b3] SimpleWeightedGraphs v1.5.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GcjXpk/Manifest.toml` ⌅ [ec485272] ArnoldiMethod v0.1.0 [34da2185] Compat v4.16.0 [864edb3b] DataStructures v0.18.22 ⌃ [86223c79] Graphs v1.9.0 [d25df0c9] Inflate v0.1.5 [093fc24a] LightGraphs v1.3.5 [1914dd2f] MacroTools v0.5.15 [29c4880b] OpenSMILES v0.1.0 [bac558e1] OrderedCollections v1.8.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Read Next Element | 6 6 1.4s Test Summary: | Pass Total Time Read Next Numeric | 3 3 0.9s Test Summary: | Pass Total Time Read Next Charge | 6 6 1.6s Test Summary: | Pass Total Time Brackets Known | 4 4 1.8s Test Summary: | Pass Total Time Brackets Equivalences | 4 4 0.1s ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules: Error During Test at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Got exception outside of a @test MethodError: no method matching add_vertex!(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}) The function `add_vertex!` exists, but no method is defined for this combination of argument types. Closest candidates are: add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simplegraph.jl:526 add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleDiGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simpledigraph.jl:449 Stacktrace: [1] ParseSMILES(S::String, calculate_implicit_hydrogens::Bool) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:81 [2] ParseSMILES(S::String) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:7 [3] macro expansion @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [5] top-level scope @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [6] include(fname::String) @ Main ./sysimg.jl:38 [7] top-level scope @ none:6 [8] eval @ ./boot.jl:430 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [10] _start() @ Base ./client.jl:531 Test Summary: | Error Total Time ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules | 1 1 11.0s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Testing failed after 24.66s ERROR: LoadError: Package OpenSMILES errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 82.99s: package tests unexpectedly errored