Package evaluation of OpenADMIXTURE on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:18:15.702 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.89s ################################################################################ # Installation # Installing OpenADMIXTURE... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [425c031d] + OpenADMIXTURE v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 ⌅ [67c07d97] + Automa v0.8.4 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [48062228] + FilePathsBase v0.9.24 [59287772] + Formatting v0.4.3 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.16.0 [425c031d] + OpenADMIXTURE v0.1.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [a6138be3] + SparseKmeansFeatureRanking v0.1.2 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [bc48ee85] + Tullio v0.3.8 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 146.77s ################################################################################ # Testing # Testing OpenADMIXTURE Status `/tmp/jl_NHj4sP/Project.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [59287772] Formatting v0.4.3 [bdcacae8] LoopVectorization v0.12.172 [425c031d] OpenADMIXTURE v0.1.0 [f517fe37] Polyester v0.7.16 [92933f4c] ProgressMeter v1.10.4 [ae029012] Requires v1.3.1 [4e780e97] SnpArrays v0.3.22 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [fd094767] Suppressor v0.2.8 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NHj4sP/Manifest.toml` ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 ⌃ [4fba245c] ArrayInterface v7.7.1 ⌅ [67c07d97] Automa v0.8.4 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [48062228] FilePathsBase v0.9.24 [59287772] Formatting v0.4.3 [c27321d9] Glob v1.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.172 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.16.0 [425c031d] OpenADMIXTURE v0.1.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [91c51154] SentinelArrays v1.4.8 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.1 [a6138be3] SparseKmeansFeatureRanking v0.1.2 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [bc48ee85] Tullio v0.3.8 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Using /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/../data/EUR_subset.bed as input. Loading genotype data... Loaded 379 samples and 54051 SNPs Performing 5 EM steps for priming EM Iteration 1 (0.398754221 sec): Loglikelihood = -1.6595498804547288e7 EM Iteration 2 (0.364903577 sec): Loglikelihood = -1.6012013140703265e7 EM Iteration 3 (0.361183172 sec): Loglikelihood = -1.5917727607492682e7 EM Iteration 4 (0.382719695 sec): Loglikelihood = -1.5874204857410468e7 EM Iteration 5 (0.398063048 sec): Loglikelihood = -1.5844124887428956e7 Running main algorithm 0%|▁ | ETA: 1:05:05 ( 3.91 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 2 Execution time: 3.300751135 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5601226018042263e7 Other LogLikelihoods: Previous = -1.5662840688984677e7 QN = -1.5601226018042263e7, Basic = -1.5605260227080295e7 LogLikelihood ↗: 0.003933812018259673 Past LogLikelihoods: ["-1.5844e+07", "-1.5663e+07"]                     Running main algorithm 0%|▁ | ETA: 1:11:41 ( 4.31 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 3 Execution time: 3.637265285 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5581344316118034e7 Other LogLikelihoods: Previous = -1.5601226018042263e7 QN = -1.5581344316118034e7, Basic = -1.5585246898878656e7 LogLikelihood ↗: 0.0012743679183441455 Past LogLikelihoods: ["-1.5844e+07", "-1.5663e+07", "-1.5601e+07"]                     Running main algorithm 0%|▂ | ETA: 1:09:25 ( 4.18 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 4 Execution time: 3.747139997 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.557167861746832e7 Other LogLikelihoods: Previous = -1.5581344316118034e7 QN = -1.557167861746832e7, Basic = -1.5570730049194816e7 LogLikelihood ↗: 0.000620337915241058 Past LogLikelihoods: ["-1.5844e+07", "-1.5663e+07", "-1.5601e+07", "-1.5581e+07"]                       Running main algorithm 0%|▂ | ETA: 1:06:41 ( 4.02 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 5 Execution time: 3.373358105 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5562472392329777e7 Other LogLikelihoods: Previous = -1.557167861746832e7 QN = -1.5562472392329777e7, Basic = -1.5562463526317842e7 LogLikelihood ↗: 0.0005912159738652469 Past LogLikelihoods: ["-1.5844e+07", "-1.5663e+07", "-1.5601e+07", "-1.5581e+07", "-1.5572e+07"]                       Running main algorithm 1%|▂ | ETA: 1:04:51 ( 3.91 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 6 Execution time: 3.383139821 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5557726562566007e7 Other LogLikelihoods: Previous = -1.5562472392329777e7 QN = -1.5557726562566007e7, Basic = -1.555879021342171e7 LogLikelihood ↗: 0.0003049534575308975 Past LogLikelihoods: ["-1.5844e+07", "-1.5663e+07", "-1.5601e+07", "-1.5581e+07", "-1.5572e+07", "-1.5562e+07"]                       Running main algorithm 1%|▃ | ETA: 1:03:25 ( 3.83 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 7 Execution time: 3.337317263 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.555486447069472e7 Other LogLikelihoods: Previous = -1.5557726562566007e7 QN = -1.555486447069472e7, Basic = -1.5555071477954557e7 LogLikelihood ↗: 0.00018396594513830775 Past LogLikelihoods: ["-1.5663e+07", "-1.5601e+07", "-1.5581e+07", "-1.5572e+07", "-1.5562e+07", "-1.5558e+07"]                       Running main algorithm 1%|▃ | ETA: 1:02:36 ( 3.79 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 8 Execution time: 3.46334417 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5553490234807115e7 Other LogLikelihoods: Previous = -1.555486447069472e7 QN = -1.5553490234807115e7, Basic = -1.5553448366445005e7 LogLikelihood ↗: 8.834766064305799e-5 Past LogLikelihoods: ["-1.5601e+07", "-1.5581e+07", "-1.5572e+07", "-1.5562e+07", "-1.5558e+07", "-1.5555e+07"]                       Running main algorithm 1%|▄ | ETA: 1:01:47 ( 3.74 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 9 Execution time: 3.375269857 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552680792097853e7 Other LogLikelihoods: Previous = -1.5553490234807115e7 QN = -1.5552680792097853e7, Basic = -1.555271616123736e7 LogLikelihood ↗: 5.204251245486378e-5 Past LogLikelihoods: ["-1.5581e+07", "-1.5572e+07", "-1.5562e+07", "-1.5558e+07", "-1.5555e+07", "-1.5553e+07"]                       Running main algorithm 1%|▄ | ETA: 1:01:13 ( 3.71 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 10 Execution time: 3.431211399 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552380077947734e7 Other LogLikelihoods: Previous = -1.5552680792097853e7 QN = -1.5552380077947734e7, Basic = -1.5552462999481961e7 LogLikelihood ↗: 1.9335197201010032e-5 Past LogLikelihoods: ["-1.5572e+07", "-1.5562e+07", "-1.5558e+07", "-1.5555e+07", "-1.5553e+07", "-1.5553e+07"]                       Running main algorithm 1%|▄ | ETA: 1:00:54 ( 3.69 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 11 Execution time: 3.538978561 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552272901408374e7 Other LogLikelihoods: Previous = -1.5552380077947734e7 QN = -1.5552272901408374e7, Basic = -1.5552280454058375e7 LogLikelihood ↗: 6.891327168089445e-6 Past LogLikelihoods: ["-1.5562e+07", "-1.5558e+07", "-1.5555e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07"]                       Running main algorithm 1%|▅ | ETA: 1:00:38 ( 3.68 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 12 Execution time: 3.552802139 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552243797863856e7 Other LogLikelihoods: Previous = -1.5552272901408374e7 QN = -1.5552243797863856e7, Basic = -1.5552242969227728e7 LogLikelihood ↗: 1.871337051686896e-6 Past LogLikelihoods: ["-1.5558e+07", "-1.5555e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 1%|▅ | ETA: 1:00:24 ( 3.67 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 13 Execution time: 3.543933064 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.555221807565197e7 Other LogLikelihoods: Previous = -1.5552243797863856e7 QN = -1.555221807565197e7, Basic = -1.5552219533109795e7 LogLikelihood ↗: 1.6539228821586725e-6 Past LogLikelihoods: ["-1.5555e+07", "-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 1%|▆ | ETA: 1:00:15 ( 3.67 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 14 Execution time: 3.597517148 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552210594360795e7 Other LogLikelihoods: Previous = -1.555221807565197e7 QN = -1.5552210594360795e7, Basic = -1.5552212740504114e7 LogLikelihood ↗: 4.810433559056807e-7 Past LogLikelihoods: ["-1.5553e+07", "-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|▆ | ETA: 1:00:02 ( 3.66 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 15 Execution time: 3.512229889 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552202173824796e7 Other LogLikelihoods: Previous = -1.5552210594360795e7 QN = -1.5552202173824796e7, Basic = -1.5552203510988027e7 LogLikelihood ↗: 5.414365981818816e-7 Past LogLikelihoods: ["-1.5553e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|▆ | ETA: 0:59:53 ( 3.65 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 16 Execution time: 3.575655309 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552199031200362e7 Other LogLikelihoods: Previous = -1.5552202173824796e7 QN = -1.5552199031200362e7, Basic = -1.5552200376432057e7 LogLikelihood ↗: 2.0206941749850116e-7 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|▇ | ETA: 0:59:44 ( 3.65 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 17 Execution time: 3.554065126 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552195373981263e7 Other LogLikelihoods: Previous = -1.5552199031200362e7 QN = -1.5552195373981263e7, Basic = -1.5552195982786493e7 LogLikelihood ↗: 2.351576835882747e-7 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|▇ | ETA: 0:59:38 ( 3.64 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 18 Execution time: 3.594841584 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.5552193525263749e7 Other LogLikelihoods: Previous = -1.5552195373981263e7 QN = -1.5552193525263749e7, Basic = -1.5552194748489091e7 LogLikelihood ↗: 1.1887180362448444e-7 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 2%|█ | ETA: 0:59:28 ( 3.64 s/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 19 Execution time: 3.532661642 Initial LogLikelihood: -1.5844124887428956e7 Current LogLikelihood: -1.555219296735965e7 Other LogLikelihoods: Previous = -1.5552193525263749e7 QN = -1.555219296735965e7, Basic = -1.5552193040801514e7 LogLikelihood ↗: 3.587301670832669e-8 Past LogLikelihoods: ["-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07", "-1.5552e+07"]                       Running main algorithm 100%|██████████████████████████████████████████████████| Time: 0:01:09 (69.11 ms/it) initial ll: -1.5844124887428956e7 Iteration 1 (3.499004305 sec): LogLikelihood = -1.5662840688984677e7, reldiff = 0.011441729961880911 LogLikelihoods: Previous = -1.5844124887428956e7 QN = -1.5662840688984677e7, Basic = -1.5659951388546454e7 Iteration 2 (3.300751135 sec): LogLikelihood = -1.5601226018042263e7, reldiff = 0.003933812018259673 LogLikelihoods: Previous = -1.5662840688984677e7 QN = -1.5601226018042263e7, Basic = -1.5605260227080295e7 Iteration 3 (3.637265285 sec): LogLikelihood = -1.5581344316118034e7, reldiff = 0.0012743679183441455 LogLikelihoods: Previous = -1.5601226018042263e7 QN = -1.5581344316118034e7, Basic = -1.5585246898878656e7 Iteration 4 (3.747139997 sec): LogLikelihood = -1.557167861746832e7, reldiff = 0.000620337915241058 LogLikelihoods: Previous = -1.5581344316118034e7 QN = -1.557167861746832e7, Basic = -1.5570730049194816e7 Iteration 5 (3.373358105 sec): LogLikelihood = -1.5562472392329777e7, reldiff = 0.0005912159738652469 LogLikelihoods: Previous = -1.557167861746832e7 QN = -1.5562472392329777e7, Basic = -1.5562463526317842e7 Iteration 6 (3.383139821 sec): LogLikelihood = -1.5557726562566007e7, reldiff = 0.0003049534575308975 LogLikelihoods: Previous = -1.5562472392329777e7 QN = -1.5557726562566007e7, Basic = -1.555879021342171e7 Iteration 7 (3.337317263 sec): LogLikelihood = -1.555486447069472e7, reldiff = 0.00018396594513830775 LogLikelihoods: Previous = -1.5557726562566007e7 QN = -1.555486447069472e7, Basic = -1.5555071477954557e7 Iteration 8 (3.46334417 sec): LogLikelihood = -1.5553490234807115e7, reldiff = 8.834766064305799e-5 LogLikelihoods: Previous = -1.555486447069472e7 QN = -1.5553490234807115e7, Basic = -1.5553448366445005e7 Iteration 9 (3.375269857 sec): LogLikelihood = -1.5552680792097853e7, reldiff = 5.204251245486378e-5 LogLikelihoods: Previous = -1.5553490234807115e7 QN = -1.5552680792097853e7, Basic = -1.555271616123736e7 Iteration 10 (3.431211399 sec): LogLikelihood = -1.5552380077947734e7, reldiff = 1.9335197201010032e-5 LogLikelihoods: Previous = -1.5552680792097853e7 QN = -1.5552380077947734e7, Basic = -1.5552462999481961e7 Iteration 11 (3.538978561 sec): LogLikelihood = -1.5552272901408374e7, reldiff = 6.891327168089445e-6 LogLikelihoods: Previous = -1.5552380077947734e7 QN = -1.5552272901408374e7, Basic = -1.5552280454058375e7 Iteration 12 (3.552802139 sec): LogLikelihood = -1.5552243797863856e7, reldiff = 1.871337051686896e-6 LogLikelihoods: Previous = -1.5552272901408374e7 QN = -1.5552243797863856e7, Basic = -1.5552242969227728e7 Iteration 13 (3.543933064 sec): LogLikelihood = -1.555221807565197e7, reldiff = 1.6539228821586725e-6 LogLikelihoods: Previous = -1.5552243797863856e7 QN = -1.555221807565197e7, Basic = -1.5552219533109795e7 Iteration 14 (3.597517148 sec): LogLikelihood = -1.5552210594360795e7, reldiff = 4.810433559056807e-7 LogLikelihoods: Previous = -1.555221807565197e7 QN = -1.5552210594360795e7, Basic = -1.5552212740504114e7 Iteration 15 (3.512229889 sec): LogLikelihood = -1.5552202173824796e7, reldiff = 5.414365981818816e-7 LogLikelihoods: Previous = -1.5552210594360795e7 QN = -1.5552202173824796e7, Basic = -1.5552203510988027e7 Iteration 16 (3.575655309 sec): LogLikelihood = -1.5552199031200362e7, reldiff = 2.0206941749850116e-7 LogLikelihoods: Previous = -1.5552202173824796e7 QN = -1.5552199031200362e7, Basic = -1.5552200376432057e7 Iteration 17 (3.554065126 sec): LogLikelihood = -1.5552195373981263e7, reldiff = 2.351576835882747e-7 LogLikelihoods: Previous = -1.5552199031200362e7 QN = -1.5552195373981263e7, Basic = -1.5552195982786493e7 Iteration 18 (3.594841584 sec): LogLikelihood = -1.5552193525263749e7, reldiff = 1.1887180362448444e-7 LogLikelihoods: Previous = -1.5552195373981263e7 QN = -1.5552193525263749e7, Basic = -1.5552194748489091e7 Iteration 19 (3.532661642 sec): LogLikelihood = -1.555219296735965e7, reldiff = 3.587301670832669e-8 LogLikelihoods: Previous = -1.5552193525263749e7 QN = -1.555219296735965e7, Basic = -1.5552193040801514e7 Main algorithm converged in 19 iterations over 68.973336913 sec. OpenADMIXTURE.jl: Test Failed at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:8 Expression: d.ll_new ≈ -1.555219392972111e7 Evaluated: -1.555219296735965e7 ≈ -1.555219392972111e7 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:8 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:5 Using /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/../data/EUR_subset.bed as input. cnt of sparse1:6 test_4_1000aims Loading genotype data... Loaded 379 samples and 1000 SNPs Performing 5 EM steps for priming EM Iteration 1 (0.006257299 sec): Loglikelihood = -287634.0377119485 EM Iteration 2 (0.006310069 sec): Loglikelihood = -275253.75752823905 EM Iteration 3 (0.00624858 sec): Loglikelihood = -273399.61747970333 EM Iteration 4 (0.006450697 sec): Loglikelihood = -272620.8741610992 EM Iteration 5 (0.0062266 sec): Loglikelihood = -272058.2959514947 Running main algorithm 1%|▃ | ETA: 0:01:13 (73.96 ms/it) INFO: Percent is for max 1000 iterations. Likely to converge early at LL ↗ of 1.0e-7. Iteration: 7 Execution time: 0.092541437 Initial LogLikelihood: -272058.2959514947 Current LogLikelihood: -222802.0045770202 Other LogLikelihoods: Previous = -222887.47059840042 QN = -222802.0045770202, Basic = -222804.14624706592 LogLikelihood ↗: 0.00038344919591377864 Past LogLikelihoods: ["-2.3987e+05", "-2.3544e+05", "-2.2711e+05", "-2.2383e+05", "-2.2298e+05", "-2.2289e+05"]                       Running main algorithm 100%|██████████████████████████████████████████████████| Time: 0:00:01 ( 1.00 ms/it) initial ll: -272058.2959514947 Iteration 1 (0.063769864 sec): LogLikelihood = -239868.1261299308, reldiff = 0.11832085365742014 LogLikelihoods: Previous = -272058.2959514947 QN = -239868.1261299308, Basic = -240152.03883613006 Iteration 2 (0.063048282 sec): LogLikelihood = -235442.58743934357, reldiff = 0.018449882283192706 LogLikelihoods: Previous = -239868.1261299308 QN = -235442.58743934357, Basic = -230092.16127734046 Iteration 3 (0.06313424 sec): LogLikelihood = -227106.76899734559, reldiff = 0.03540488801392193 LogLikelihoods: Previous = -235442.58743934357 QN = -227106.76899734559, Basic = -228500.3911099939 Iteration 4 (0.066031643 sec): LogLikelihood = -223826.4935120186, reldiff = 0.01444375920545685 LogLikelihoods: Previous = -227106.76899734559 QN = -223826.4935120186, Basic = -224262.4782819738 Iteration 5 (0.080907649 sec): LogLikelihood = -222976.7890414456, reldiff = 0.0037962640491769864 LogLikelihoods: Previous = -223826.4935120186 QN = -222976.7890414456, Basic = -222960.5612634169 Iteration 6 (0.086757733 sec): LogLikelihood = -222887.47059840042, reldiff = 0.0004005728283609091 LogLikelihoods: Previous = -222976.7890414456 QN = -222887.47059840042, Basic = -222866.28955533303 Iteration 7 (0.092541437 sec): LogLikelihood = -222802.0045770202, reldiff = 0.00038344919591377864 LogLikelihoods: Previous = -222887.47059840042 QN = -222802.0045770202, Basic = -222804.14624706592 Iteration 8 (0.096244621 sec): LogLikelihood = -222783.04429953982, reldiff = 8.509922303611526e-5 LogLikelihoods: Previous = -222802.0045770202 QN = -222783.04429953982, Basic = -222782.0688801572 Iteration 9 (0.098196572 sec): LogLikelihood = -222776.2230775461, reldiff = 3.0618227770246576e-5 LogLikelihoods: Previous = -222783.04429953982 QN = -222776.2230775461, Basic = -222776.14420691397 Iteration 10 (0.096083922 sec): LogLikelihood = -222775.63764029404, reldiff = 2.6279162290404697e-6 LogLikelihoods: Previous = -222776.2230775461 QN = -222775.63764029404, Basic = -222775.72125688652 Iteration 11 (0.096179592 sec): LogLikelihood = -222775.5674357636, reldiff = 3.151355829514212e-7 LogLikelihoods: Previous = -222775.63764029404 QN = -222775.5674357636, Basic = -222775.573882088 Iteration 12 (0.095045182 sec): LogLikelihood = -222775.54924460157, reldiff = 8.16568990959444e-8 LogLikelihoods: Previous = -222775.5674357636 QN = -222775.54924460157, Basic = -222775.54930781445 Main algorithm converged in 12 iterations over 1.002691962 sec. OpenADMIXTURE.jl: Test Failed at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:11 Expression: d.ll_new ≈ -216519.78193892565 Evaluated: -222775.54924460157 ≈ -216519.78193892565 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:11 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] top-level scope @ ~/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:5 Test Summary: | Fail Total Time OpenADMIXTURE.jl | 2 2 6m00.5s ERROR: LoadError: Some tests did not pass: 0 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OpenADMIXTURE/SRfRR/test/runtests.jl:4 Testing failed after 377.71s ERROR: LoadError: Package OpenADMIXTURE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 549.59s: package has test failures