Package evaluation of OceanStateEstimation on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T16:53:15.805 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.96s ################################################################################ # Installation # Installing OceanStateEstimation... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [891f6deb] + OceanStateEstimation v0.4.6 Updating `~/.julia/environments/v1.11/Manifest.toml` [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [81a5f4ea] + CatViews v1.0.0 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 [b4f34e82] + Distances v0.10.12 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [c27321d9] + Glob v1.3.1 [cd3eb016] + HTTP v1.10.15 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.15 [739be429] + MbedTLS v1.1.9 [cb8c808f] + MeshArrays v0.3.20 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [891f6deb] + OceanStateEstimation v0.4.6 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.2 [1986cc42] + Unitful v1.22.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 241.76s ################################################################################ # Testing # Testing OceanStateEstimation Status `/tmp/jl_AoboIn/Project.toml` ⌃ [dce5fa8e] MITgcm v0.3.8 [cb8c808f] MeshArrays v0.3.20 [85f8d34a] NCDatasets v0.14.7 [891f6deb] OceanStateEstimation v0.4.6 [10745b16] Statistics v1.11.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_AoboIn/Manifest.toml` [d1d4a3ce] BitFlags v0.1.9 ⌅ [179af706] CFTime v0.1.4 [336ed68f] CSV v0.10.15 [81a5f4ea] CatViews v1.0.0 [f6adb021] ClimateModels v0.3.8 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.3.8 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [9c0b9be8] Dataverse v0.2.7 [3c3547ce] DiskArrays v0.4.12 [b4f34e82] Distances v0.10.12 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [c58ffaec] FortranFiles v0.6.0 [d7ba0133] Git v1.3.1 [c27321d9] Glob v1.3.1 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [e6f89c97] LoggingExtras v1.1.0 ⌃ [dce5fa8e] MITgcm v0.3.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 [cb8c808f] MeshArrays v0.3.20 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.7 [b8a86587] NearestNeighbors v0.4.21 [891f6deb] OceanStateEstimation v0.4.6 [6fe1bfb0] OffsetArrays v1.16.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [892a3eda] StringManipulation v0.4.1 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [1986cc42] Unitful v1.22.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.7+2 [458c3c95] OpenSSL_jll v3.0.16+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0001.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0002.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0003.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0004.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0005.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0006.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0007.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0008.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0009.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0010.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0011.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0012.nc Downloading file : /home/pkgeval/.julia/scratchspaces/891f6deb-a4f5-4bc5-a2e3-1e8f649cdd2c/ECCO/oceQnet/oceQnet.0013.nc OceanStateEstimation.jl: Error During Test at /home/pkgeval/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:8 Got exception outside of a @test failed: call to `read_nctiles` This method is provided by `MITgcm.jl` and now activated by `using MITgcm` Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] get_ecco_files(γ::gcmgrid, v::String, t::Int64) @ OceanStateEstimation.downloads ~/.julia/packages/OceanStateEstimation/WfdMV/src/downloads.jl:56 [3] get_ecco_files(γ::gcmgrid, v::String) @ OceanStateEstimation.downloads ~/.julia/packages/OceanStateEstimation/WfdMV/src/downloads.jl:52 [4] macro expansion @ ~/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:10 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:9 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] top-level scope @ none:6 [9] eval @ ./boot.jl:430 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [11] _start() @ Base ./client.jl:531 caused by: MethodError: no method matching read_nctiles(::String, ::String, ::gcmgrid; I::Tuple{Colon, Colon, Int64}) The function `read_nctiles` exists, but no method is defined for this combination of argument types. Stacktrace: [1] read_nctiles_alias(::String, ::Vararg{Any}; kwargs::@Kwargs{I::Tuple{Colon, Colon, Int64}}) @ OceanStateEstimationMITgcmExt ~/.julia/packages/OceanStateEstimation/WfdMV/ext/OceanStateEstimationMITgcmExt.jl:7 [2] get_ecco_files(γ::gcmgrid, v::String, t::Int64) @ OceanStateEstimation.downloads ~/.julia/packages/OceanStateEstimation/WfdMV/src/downloads.jl:54 [3] get_ecco_files(γ::gcmgrid, v::String) @ OceanStateEstimation.downloads ~/.julia/packages/OceanStateEstimation/WfdMV/src/downloads.jl:52 [4] macro expansion @ ~/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:10 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:9 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] top-level scope @ none:6 [9] eval @ ./boot.jl:430 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [11] _start() @ Base ./client.jl:531 Test Summary: | Error Total Time OceanStateEstimation.jl | 1 1 42.7s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OceanStateEstimation/WfdMV/test/runtests.jl:8 Testing failed after 75.33s ERROR: LoadError: Package OceanStateEstimation errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 352.35s: package tests unexpectedly errored