Package evaluation of NMFk on Julia 1.11.4 (a71dd056e0*) started at 2025-04-09T02:41:10.853


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.19s


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# Installation
#

Installing NMFk...
   Resolving package versions...
   Installed Conda ──── v1.10.2
   Installed IJulia ─── v1.27.0
   Installed PlotlyJS ─ v0.18.15
   Installed WebIO ──── v0.8.21
    Updating `~/.julia/environments/v1.11/Project.toml`
  [e40cd9e2] + NMFk v1.4.11
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.3.0
  [a0f608ac] + AffineInvariantMCMC v1.3.0
  [66dad0bd] + AliasTables v1.1.3
  [fd9e7046] + Anasol v1.0.1
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.18.0
  [bf4720bc] + AssetRegistry v0.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [7f9c7709] + BIGUQ v1.1.1
  [6e4b80f9] + BenchmarkTools v1.6.0
  [d1d4a3ce] + BitFlags v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [a134a8b2] + BlackBoxOptim v0.6.3
  [ad839575] + Blink v0.12.9
  [a74b3585] + Blosc v0.7.3
  [e1450e63] + BufferedStreams v1.2.2
  [fa961155] + CEnum v0.5.0
  [2a0fbf3d] + CPUSummary v0.2.6
  [a9c8d775] + CPUTime v1.0.0
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
  [aafaddc9] + CatIndices v0.2.2
  [324d7699] + CategoricalArrays v0.10.8
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [aaaa29a8] + Clustering v0.15.8
  [523fee87] + CodecBzip2 v0.8.5
  [6309b1aa] + CodecInflate64 v0.1.3
  [944b1d66] + CodecZlib v0.7.8
⌃ [35d6a980] + ColorSchemes v3.26.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌅ [c3611d14] + ColorVectorSpace v0.9.10
⌅ [5ae59095] + Colors v0.12.11
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
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⌅ [7ad07ef1] + CoupledFields v0.2.0
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  [8bb1440f] + DelimitedFiles v1.9.1
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  [e1f3b4f0] + DocumentFunction v1.4.0
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⌅ [8fc22ac5] + FilePaths v0.8.3
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  [acd30bff] + GeostatInversion v1.2.0
  [d7ba0133] + Git v1.3.1
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  [86223c79] + Graphs v1.12.1
  [42e2da0e] + Grisu v1.0.2
  [c8ec2601] + H5Zblosc v0.1.2
  [f67ccb44] + HDF5 v0.17.2
  [cd3eb016] + HTTP v1.10.15
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⌅ [a09fc81d] + ImageCore v0.9.4
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⌃ [6a3955dd] + ImageFiltering v0.7.6
⌃ [82e4d734] + ImageIO v0.6.8
⌃ [6218d12a] + ImageMagick v1.2.1
⌃ [bc367c6b] + ImageMetadata v0.9.9
  [787d08f9] + ImageMorphology v0.4.6
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⌃ [80713f31] + ImageSegmentation v1.8.1
  [4e3cecfd] + ImageShow v0.3.8
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⌃ [916415d5] + Images v0.26.1
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
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⌅ [033835bb] + JLD2 v0.4.54
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  [4076af6c] + JuMP v1.25.0
  [e5e0dc1b] + Juno v0.8.4
  [5ab0869b] + KernelDensity v0.6.9
  [6133562b] + Kriging v1.3.0
  [2d691ee1] + LIBLINEAR v0.7.1
  [b964fa9f] + LaTeXStrings v1.4.0
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  [0e77f7df] + LazilyInitializedFields v1.3.0
  [50d2b5c4] + Lazy v0.15.1
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⌅ [626554b9] + MetaGraphs v0.7.2
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  [6ef6ca0d] + NMF v1.0.3
  [e40cd9e2] + NMFk v1.4.11
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  [f0f68f2c] + PlotlyJS v0.18.15
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  [1d0040c9] + PolyesterWeave v0.2.2
  [f27b6e38] + Polynomials v4.0.19
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⌅ [aea7be01] + PrecompileTools v1.2.1
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⌅ [2913bbd2] + StatsBase v0.33.21
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  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log`
    Building Conda ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log`
    Building IJulia ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/be30be76e25b0aff2c9a85930ed3ac34c5f10c83/build.log`
    Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/e415b25fdec06e57590a7d5ac8e0cf662fa317e2/build.log`

Installation completed after 34.21s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 61 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#816 at ./asyncevent.jl:311
jfptr_YY.816_67229.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007bcc08248b00 Total snapshots: 323. Utilization: 0%
   ╎323 @Base/asyncevent.jl:311; (::Base.var"#816#817"{FileWatching.Pidfile.var…
   ╎ 323 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  323 @Base/condition.jl:125; wait
   ╎   323 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    323 @Base/task.jl:1021; wait()
322╎     323 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
task_done_hook at ./task.jl:694
jfptr_task_done_hook_66630.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
jl_finish_task at /source/src/task.c:319
start_task at /source/src/task.c:1213
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007f5442ebc650 Total snapshots: 360. Utilization: 0%
   ╎360 @Base/task.jl:694; task_done_hook(t::Task)
   ╎ 360 @Base/task.jl:1021; wait()
359╎  360 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[61] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:152
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
poptask at ./task.jl:1012
wait at ./task.jl:1021
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
wait_readnb at ./stream.jl:416
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
eof at ./stream.jl:106
profile_printing_listener at ./Base.jl:577
eof at ./io.jl:472 [inlined]
monitor_std#18 at ./precompilation.jl:746
#1190 at ./Base.jl:617
monitor_std at ./precompilation.jl:742
jfptr_YY.1190_76096.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 20034474 (Pool: 20032754; Big: 1720); GC: 17
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
jfptr_monitor_std_45029.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
error at ./error.jl:35
#30 at ./precompilation.jl:907
#schedule#761 at ./task.jl:884
jfptr_YY.30_71923.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 80416060 (Pool: 80413636; Big: 2424); GC: 81
schedule at ./task.jl:876 [inlined]
uv_writecb_task at ./stream.jl:1200
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
error at ./error.jl:35
jfptr_uv_writecb_task_67080.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
#schedule#761 at ./task.jl:884
jlcapi_uv_writecb_task_67543.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
schedule at ./task.jl:876 [inlined]
uv_writecb_task at ./stream.jl:1200
poptask at ./task.jl:1012
jfptr_uv_writecb_task_67080.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
wait at ./task.jl:1021
jlcapi_uv_writecb_task_67543.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
uv_write at ./stream.jl:1081
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
unsafe_write at ./stream.jl:1154
poptask at ./task.jl:1012
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
wait at ./task.jl:1021
uv_write at ./stream.jl:1081
jfptr_print_48429.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
showerror at ./errorshow.jl:152
unknown function (ip: 0x7f547cd70dc6)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
unsafe_write at ./stream.jl:1154
_atexit at ./initdefs.jl:462
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
jfptr__atexit_69596.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517
jfptr_print_48429.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
showerror at ./errorshow.jl:152
unknown function (ip: 0x7bcc300c69b6)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
_atexit at ./initdefs.jl:462
jfptr__atexit_69596.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517

PkgEval terminated after 2766.74s: test duration exceeded the time limit