Package evaluation of NCBITaxonomy on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:07:31.735


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.28s


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# Installation
#

Installing NCBITaxonomy...
   Resolving package versions...
   Installed NCBITaxonomy ─ v0.4.1
    Updating `~/.julia/environments/v1.11/Project.toml`
  [f88b31d2] + NCBITaxonomy v0.4.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [69666777] + Arrow v2.8.0
  [31f734f8] + ArrowTypes v2.3.0
  [c3b6d118] + BitIntegers v0.3.5
  [5ba52731] + CodecLz4 v0.4.6
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.10.12
  [4e289a0a] + EnumX v1.0.5
  [e2ba6199] + ExprTools v0.1.10
⌅ [92fee26a] + GZip v0.5.2
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [6ac74813] + MD5 v0.2.3
  [e1d29d7a] + Missings v1.2.0
  [78c3b35d] + Mocking v0.8.1
  [f88b31d2] + NCBITaxonomy v0.4.1
  [bac558e1] + OrderedCollections v1.8.0
  [2dfb63ee] + PooledArrays v1.4.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [189a3867] + Reexport v1.2.2
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [88034a9c] + StringDistances v0.11.3
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
  [dc5dba14] + TZJData v1.5.0+2025b
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [f269a46b] + TimeZones v1.21.3
  [3bb67fe8] + TranscodingStreams v0.11.3
  [5ced341a] + Lz4_jll v1.10.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building NCBITaxonomy → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/fff23a8277e4516caa5531b1297543ff80d9521c/build.log`

Installation completed after 674.1s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 114.04s


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# Testing
#

     Testing NCBITaxonomy
      Status `/tmp/jl_WpFsvA/Project.toml`
  [1520ce14] AbstractTrees v0.4.5
  [f88b31d2] NCBITaxonomy v0.4.1
  [88034a9c] StringDistances v0.11.3
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_WpFsvA/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [69666777] Arrow v2.8.0
  [31f734f8] ArrowTypes v2.3.0
  [c3b6d118] BitIntegers v0.3.5
  [5ba52731] CodecLz4 v0.4.6
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.10.12
  [4e289a0a] EnumX v1.0.5
  [e2ba6199] ExprTools v0.1.10
⌅ [92fee26a] GZip v0.5.2
  [842dd82b] InlineStrings v1.4.3
  [41ab1584] InvertedIndices v1.3.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b964fa9f] LaTeXStrings v1.4.0
  [6ac74813] MD5 v0.2.3
  [e1d29d7a] Missings v1.2.0
  [78c3b35d] Mocking v0.8.1
  [f88b31d2] NCBITaxonomy v0.4.1
  [bac558e1] OrderedCollections v1.8.0
  [2dfb63ee] PooledArrays v1.4.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [189a3867] Reexport v1.2.2
  [6c6a2e73] Scratch v1.2.1
  [91c51154] SentinelArrays v1.4.8
  [a2af1166] SortingAlgorithms v1.2.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [88034a9c] StringDistances v0.11.3
  [892a3eda] StringManipulation v0.4.1
  [354b36f9] StringViews v1.3.4
  [dc5dba14] TZJData v1.5.0+2025b
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [f269a46b] TimeZones v1.21.3
  [3bb67fe8] TranscodingStreams v0.11.3
  [5ced341a] Lz4_jll v1.10.1+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [b27032c2] LibCURL v0.6.4
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
[TEST  1] PASS taxon.jl
[TEST  2] PASS exceptions.jl
Test Failed at /home/pkgeval/.julia/packages/NCBITaxonomy/obnXA/test/lineages.jl:12
  Expression: AbstractTrees.children(ncbi"Lamellodiscus") == collect(AbstractTrees.Leaves(ncbi"Lamellodiscus"))
   Evaluated: NCBITaxon[Lamellodiscus obeliae (ncbi:119376), Lamellodiscus erythrini (ncbi:119377), Lamellodiscus virgula (ncbi:119378), Lamellodiscus drummondi (ncbi:119379), Lamellodiscus elegans (ncbi:142933), Lamellodiscus ignoratus (ncbi:142934), Lamellodiscus mormyri (ncbi:142935), Lamellodiscus verberis (ncbi:142936), Lamellodiscus baeri (ncbi:165562), Lamellodiscus bidens (ncbi:165563)  …  Lamellodiscus donatellae (ncbi:630949), Lamellodiscus abbreviatus (ncbi:990273), Lamellodiscus confusus (ncbi:990274), Lamellodiscus falcus (ncbi:990275), Lamellodiscus kechemirae (ncbi:990276), Lamellodiscus neifari (ncbi:990277), Lamellodiscus theroni (ncbi:1331957), Lamellodiscus takitai (ncbi:2749713), unclassified Lamellodiscus (ncbi:2749714), Lamellodiscus chin (ncbi:2749715)] == NCBITaxon[Lamellodiscus obeliae (ncbi:119376), Lamellodiscus erythrini (ncbi:119377), Lamellodiscus virgula (ncbi:119378), Lamellodiscus drummondi (ncbi:119379), Lamellodiscus elegans (ncbi:142933), Lamellodiscus ignoratus (ncbi:142934), Lamellodiscus mormyri (ncbi:142935), Lamellodiscus verberis (ncbi:142936), Lamellodiscus baeri (ncbi:165562), Lamellodiscus bidens (ncbi:165563)  …  Lamellodiscus donatellae (ncbi:630949), Lamellodiscus abbreviatus (ncbi:990273), Lamellodiscus confusus (ncbi:990274), Lamellodiscus falcus (ncbi:990275), Lamellodiscus kechemirae (ncbi:990276), Lamellodiscus neifari (ncbi:990277), Lamellodiscus theroni (ncbi:1331957), Lamellodiscus takitai (ncbi:2749713), Lamellodiscus diplodi (nom. nud.) (ncbi:993027), Lamellodiscus chin (ncbi:2749715)]

[TEST  3] FAIL lineages.jl
LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/NCBITaxonomy/obnXA/test/lineages.jl:1
ERROR: LoadError: "TEST FAILED"
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NCBITaxonomy/obnXA/test/runtests.jl:29
 [2] include(fname::String)
   @ Main ./sysimg.jl:38
 [3] top-level scope
   @ none:6
in expression starting at /home/pkgeval/.julia/packages/NCBITaxonomy/obnXA/test/runtests.jl:20

caused by: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/NCBITaxonomy/obnXA/test/lineages.jl:1

Testing failed after 95.18s

ERROR: LoadError: Package NCBITaxonomy errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 909.97s: package tests unexpectedly errored