Package evaluation of MotifCluster on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:22:27.532 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.14s ################################################################################ # Installation # Installing MotifCluster... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [daa9fd3b] + MotifCluster v0.2.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 ⌅ [4c88cf16] + Aqua v0.6.7 [ec485272] + ArnoldiMethod v0.4.0 [aaaa29a8] + Clustering v0.15.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [86223c79] + Graphs v1.12.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [daa9fd3b] + MotifCluster v0.2.3 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 23.39s ################################################################################ # Testing # Testing MotifCluster Status `/tmp/jl_gCxDFm/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [aaaa29a8] Clustering v0.15.8 [31c24e10] Distributions v0.25.118 [86223c79] Graphs v1.12.1 [daa9fd3b] MotifCluster v0.2.3 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gCxDFm/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [4c88cf16] Aqua v0.6.7 [ec485272] ArnoldiMethod v0.4.0 [aaaa29a8] Clustering v0.15.8 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [86223c79] Graphs v1.12.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [daa9fd3b] MotifCluster v0.2.3 [b8a86587] NearestNeighbors v0.4.21 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster"): Test Failed at /home/pkgeval/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:25 Expression: result ⊜ true Evaluated: ⟪result: 😭 FAILED: Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster") Some package(s) in `deps` of Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster") are not loaded during via `using MotifCluster`. * Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test") To ignore from stale dependency detection, pass the package name to `ignore` keyword argument of `Aqua.test_stale_deps` ⟫ ⊜ true Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:25 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1793 [inlined] [4] test_stale_deps(packages::Module; kwargs::@Kwargs{ignore::Vector{Symbol}}) @ Aqua ~/.julia/packages/Aqua/zpdNP/src/stale_deps.jl:23 Test Summary: | Pass Fail Total Time MotifCluster | 719 1 720 4m59.1s Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster") | 1 1 0.0s Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster") | 1 1 4.5s Base.PkgId(Base.UUID("daa9fd3b-41af-4965-b715-a21506bae1e4"), "MotifCluster") | 1 1 0.0s /home/pkgeval/.julia/packages/MotifCluster/BEzjj/Project.toml | 1 1 0.0s /home/pkgeval/.julia/packages/MotifCluster/BEzjj/docs/Project.toml | 1 1 0.0s Clustering | 541 541 2m10.1s cluster_spectrum | 1 1 24.4s run_motif_clustering | 540 540 1m45.7s Indicators | 11 11 10.3s Spectral | 38 38 43.8s get_first_eigs | 2 2 7.2s build_laplacian | 6 6 16.0s run_laplace_embedding | 8 8 1.2s run_mot_embedding_restrict | 14 14 16.7s run_mot_embedding_no_restrict | 8 8 2.7s Motif Adjacency | 102 102 0.9s mam_unweighted_func | 17 17 0.6s mam_unweighted_struc | 17 17 0.0s mam_mean_weighted_func | 17 17 0.2s mam_mean_weighted_struc | 17 17 0.0s mam_product_weighted_func | 17 17 0.0s mam_product_weighted_struc | 17 17 0.0s Utils | 5 5 6.3s a_b_one | 1 1 0.6s a_one_b | 1 1 0.6s dropzeros_killdiag | 1 1 0.2s get_largest_component | 2 2 4.8s Clustering | 15 15 37.9s sample_dsbm_unweighted | 2 2 7.5s sample_dsbm_constant_weighted | 2 2 3.0s sample_dsbm_poisson_weighted | 3 3 2.0s sample_dsbm_large | 1 1 1.4s sample_bsbm_unweighted | 2 2 6.7s sample_bsbm_constant_weighted | 2 2 13.9s sample_bsbm_poisson_weighted | 3 3 3.4s ERROR: LoadError: Some tests did not pass: 719 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MotifCluster/BEzjj/test/runtests.jl:9 Testing failed after 314.81s ERROR: LoadError: Package MotifCluster errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 369.14s: package has test failures