Package evaluation of MolecularGraph on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T16:08:20.513 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.45s ################################################################################ # Installation # Installing MolecularGraph... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [6c89ec66] + MolecularGraph v0.17.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [159f3aea] + Cairo v1.1.1 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.0 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.5 [53c48c17] + FixedPointNumbers v0.8.5 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.7 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.1 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.10 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.15 [20f20a25] + MakieCore v0.9.1 [6c89ec66] + MolecularGraph v0.17.3 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.4 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [ddb6d928] + YAML v0.4.13 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.4+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [78b55507] + Gettext_jll v0.21.0+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [d4300ac3] + Libgcrypt_jll v1.11.1+0 [7add5ba3] + Libgpg_error_jll v1.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [38a345b3] + Libuuid_jll v2.41.0+0 [36c8627f] + Pango_jll v1.56.1+0 [30392449] + Pixman_jll v0.44.2+0 [02c8fc9c] + XML2_jll v2.13.6+1 [aed1982a] + XSLT_jll v1.1.43+0 [4f6342f7] + Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] + Xorg_libXau_jll v1.0.12+0 [a3789734] + Xorg_libXdmcp_jll v1.1.5+0 [1082639a] + Xorg_libXext_jll v1.3.6+3 [ea2f1a96] + Xorg_libXrender_jll v0.9.11+1 [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.47+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 45.56s ################################################################################ # Testing # Testing MolecularGraph Status `/tmp/jl_S7oMOB/Project.toml` [159f3aea] Cairo v1.1.1 [5ae59095] Colors v0.13.0 [8bb1440f] DelimitedFiles v1.9.1 [5c1252a2] GeometryBasics v0.5.7 [86223c79] Graphs v1.12.1 [682c06a0] JSON v0.21.4 [20f20a25] MakieCore v0.9.1 [6c89ec66] MolecularGraph v0.17.3 [10745b16] Statistics v1.11.1 [ddb6d928] YAML v0.4.13 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_S7oMOB/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [159f3aea] Cairo v1.1.1 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [411431e0] Extents v0.1.5 [53c48c17] FixedPointNumbers v0.8.5 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [5c1252a2] GeometryBasics v0.5.7 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.12.1 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.10 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [1914dd2f] MacroTools v0.5.15 [20f20a25] MakieCore v0.9.1 [6c89ec66] MolecularGraph v0.17.3 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [189a3867] Reexport v1.2.2 [699a6c99] SimpleTraits v0.9.4 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [ddb6d928] YAML v0.4.13 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.4+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [78b55507] Gettext_jll v0.21.0+0 ⌃ [7746bdde] Glib_jll v2.82.4+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.0+0 [1d63c593] LLVMOpenMP_jll v18.1.7+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.2.2+2 [d4300ac3] Libgcrypt_jll v1.11.1+0 [7add5ba3] Libgpg_error_jll v1.51.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [38a345b3] Libuuid_jll v2.41.0+0 [36c8627f] Pango_jll v1.56.1+0 [30392449] Pixman_jll v0.44.2+0 [02c8fc9c] XML2_jll v2.13.6+1 [aed1982a] XSLT_jll v1.1.43+0 [4f6342f7] Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] Xorg_libXau_jll v1.0.12+0 [a3789734] Xorg_libXdmcp_jll v1.1.5+0 [1082639a] Xorg_libXext_jll v1.3.6+3 [ea2f1a96] Xorg_libXrender_jll v0.9.11+1 [14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] Xorg_libxcb_jll v1.17.0+3 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.47+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time util.iterator | 22 22 2.9s Test Summary: | Pass Total Time util.math | 4 4 0.1s Test Summary: | Pass Total Time geometry.cartesian | 34 34 12.3s Test Summary: | Pass Total Time geometry.internal | 8 8 2.6s Test Summary: | Pass Total Time model.atom | 16 16 1.1s Test Summary: | Pass Total Time model.bond | 10 10 0.5s Test Summary: | Pass Total Time model.molgraph | 83 83 19.7s Test Summary: | Pass Total Time model.query | 58 58 31.9s Test Summary: | Pass Total Time operator | 20 20 2.5s Test Summary: | Pass Total Time cycle | 8 8 5.9s Test Summary: | Pass Total Time bipartite | 4 4 2.5s Test Summary: | Pass Total Time matching | 12 12 5.5s Test Summary: | Pass Total Time graph.planarity | 42 42 9.3s Test Summary: | Pass Total Time clique | 22 22 6.0s Test Summary: | Pass Total Time isomorphism_vf2 | 23 23 3.6s Test Summary: | Pass Total Time isomorphism_clique | 13 13 4.9s [ Info: Unsupported atom symbol: X (#2 in sdfilereader) Test Summary: | Pass Total Time sdfilereader | 79 79 23.1s Test Summary: | Pass Total Time sdfilewriter | 3 3 24.0s Test Summary: | Pass Total Time smarts.base | 8 8 0.1s Test Summary: | Pass Total Time smarts.logicaloperator | 14 14 2.3s Test Summary: | Pass Total Time smarts.atom | 65 65 5.2s Test Summary: | Pass Total Time smarts.bond | 9 9 0.5s Test Summary: | Pass Total Time smarts.molecule | 32 32 0.1s Test Summary: | Pass Total Time smarts.smiles | 64 64 1.0s Test Summary: | Pass Total Time smarts.smarts | 15 15 7.2s Test Summary: | Pass Total Time stereo | 79 79 3.2s Test Summary: | Pass Total Time preprocess | 71 71 3.1s Test Summary: | Pass Total Time coords | 2 2 0.2s Test Summary: | Pass Total Time properties | 95 95 3.2s Test Summary: | Pass Total Time mass | 23 23 2.5s Test Summary: | Pass Total Time wclogp | 10 10 8.7s Test Summary: | Pass Broken Total Time inchi | 3 1 4 1.8s [ Info: MolecularGraph.querymatch: maxsize exceeded Test Summary: | Pass Total Time structurematch | 86 86 8.8s Test Summary: | Pass Total Time structurematch_mcs | 34 34 6.5s Test Summary: | Pass Total Time querycontainment | 14 14 0.2s Test Summary: | Pass Total Time draw.base | 12 12 4.4s Test Summary: | Total Time svg | 0 21.1s Test Summary: | Pass Total Time draw3d | 1 1 0.1s Testing MolecularGraph tests passed Testing completed after 284.36s PkgEval succeeded after 349.87s