Package evaluation of Minc2 on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:25:28.087 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.74s ################################################################################ # Installation # Installing Minc2... Resolving package versions... Installed Minc2 ─ v0.1.8 Updating `~/.julia/environments/v1.11/Project.toml` [8e6f2f06] + Minc2 v0.1.8 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [d43a6710] + CBinding v1.1.0 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.4 [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [dbb5928d] + MappedArrays v0.4.2 [8e6f2f06] + Minc2 v0.1.8 [e1d29d7a] + Missings v1.2.0 [a3a9e032] + NIfTI v0.6.1 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [94ee1d12] + Quaternions v0.7.6 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [6c6a2e73] + Scratch v1.2.1 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [0ee61d77] + Clang_jll v16.0.6+4 ⌅ [0234f1f7] + HDF5_jll v1.12.2+2 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [7243133f] + NetCDF_jll v400.902.206+0 ⌅ [458c3c95] + OpenSSL_jll v1.1.23+1 [02c8fc9c] + XML2_jll v2.13.6+1 [dce2f2bf] + libminc_jll v2.4.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8f36deef] + libLLVM_jll v16.0.6+4 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 80.38s ################################################################################ # Testing # Testing Minc2 Status `/tmp/jl_zoAJ6A/Project.toml` [8bb1440f] DelimitedFiles v1.9.1 [a98d9a8b] Interpolations v0.15.1 [8e6f2f06] Minc2 v0.1.8 [90137ffa] StaticArrays v1.9.13 [2913bbd2] StatsBase v0.34.4 [bd369af6] Tables v1.12.0 [37e2e46d] LinearAlgebra v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_zoAJ6A/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [13072b0f] AxisAlgorithms v1.1.0 [d43a6710] CBinding v1.1.0 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.4 [a98d9a8b] Interpolations v0.15.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [dbb5928d] MappedArrays v0.4.2 [8e6f2f06] Minc2 v0.1.8 [e1d29d7a] Missings v1.2.0 [a3a9e032] NIfTI v0.6.1 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [94ee1d12] Quaternions v0.7.6 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [6c6a2e73] Scratch v1.2.1 [a2af1166] SortingAlgorithms v1.2.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [efce3f68] WoodburyMatrices v1.0.0 ⌅ [0ee61d77] Clang_jll v16.0.6+4 ⌅ [0234f1f7] HDF5_jll v1.12.2+2 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [7243133f] NetCDF_jll v400.902.206+0 ⌅ [458c3c95] OpenSSL_jll v1.1.23+1 [02c8fc9c] XML2_jll v2.13.6+1 [dce2f2bf] libminc_jll v2.4.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8f36deef] libLLVM_jll v16.0.6+4 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /workspace/srcdir/libminc/libsrc/netcdf_convenience.c:573 (from miopen): Unable to open file 'input/missing.mnc' input/missing.mnc: No such file or directory /workspace/srcdir/libminc/libsrc2/volume.c:1390 (from miopen): Unable to open file 'input/missing.mnc' /workspace/srcdir/minc2-simple/src/minc2-simple.c:159 (from miopen): Error: Can't open minc file Test Summary: | Pass Total Time Low level io | 36 36 7.3s Test Summary: | Pass Total Time Reading 3D volumes | 165 165 5.4s ┌ Warning: Truncating volume data to integer type │ Tin = Float32 │ Tout = Int16 └ @ Minc2 ~/.julia/packages/Minc2/2fPpW/src/minc2_io.jl:340 Test Summary: | Pass Total Time Testing reading wrong voxel type | 1 1 4.5s Test Summary: | Pass Total Time Reading 4D volume, raw | 4 4 22.0s Test Summary: | Pass Total Time Writing 3D volume in Float64 | 5 5 6.1s Test Summary: | Pass Total Time Writing 3D volume in short | 5 5 0.4s Test Summary: | Pass Total Time Re-generate header | 4 4 5.1s Test Summary: | Pass Total Time Test Transforms | 6 6 2.9s Test Summary: | Pass Total Time Read and Write Linear ITK transforms | 14 14 5.7s Test Summary: | Pass Total Time Read and Write NonLinear ITK transforms | 15 15 42.4s Test Summary: | Pass Total Time Read and Write MINC .xfm transforms | 13 13 20.8s Test Summary: | Pass Total Time Test Spatial coordinates correctness | 25 25 6.2s Test Summary: | Pass Total Time Test Jacobian calculation | 19 19 37.5s Testing Minc2 tests passed Testing completed after 178.11s PkgEval succeeded after 284.64s