Package evaluation of MLJNonnegativeMatrixFactorization on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T19:02:02.095


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.56s


################################################################################
# Installation
#

Installing MLJNonnegativeMatrixFactorization...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [7d9fca2a] + Arpack v0.5.4
  [a9b6321e] + Atomix v1.1.1
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [324d7699] + CategoricalArrays v0.10.8
  [af321ab8] + CategoricalDistributions v0.1.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [3da002f7] + ColorTypes v0.12.1
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [ed09eef8] + ComputationalResources v0.3.2
  [187b0558] + ConstructionBase v1.5.8
  [6add18c4] + ContextVariablesX v0.1.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.118
  [ffbed154] + DocStringExtensions v0.9.4
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [1a297f60] + FillArrays v1.13.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [46192b85] + GPUArraysCore v0.2.0
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [22cec73e] + InitialValues v0.3.1
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b14d175d] + JuliaVariables v0.2.4
  [63c18a36] + KernelAbstractions v0.9.34
  [b964fa9f] + LaTeXStrings v1.4.0
  [92ad9a40] + LearnAPI v1.0.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [c2834f40] + MLCore v1.0.0
  [a7f614a8] + MLJBase v1.8.1
  [e80e1ace] + MLJModelInterface v1.11.0
  [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1
  [d8e11817] + MLStyle v0.4.17
  [f1d291b0] + MLUtils v0.4.8
  [1914dd2f] + MacroTools v0.5.15
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [6f286f6a] + MultivariateStats v0.10.3
  [872c559c] + NNlib v0.9.30
  [71a1bf82] + NameResolution v0.1.5
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.33
  [d96e819e] + Parameters v0.12.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [321657f4] + ScientificTypes v3.1.0
  [30f210dd] + ScientificTypesBase v3.0.0
  [7e506255] + ScopedValues v1.3.0
  [efcf1570] + Setfield v1.1.2
  [605ecd9f] + ShowCases v0.1.0
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [c062fc1d] + StatisticalMeasuresBase v0.1.2
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
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  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
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  [3a884ed6] + UnPack v1.0.2
  [013be700] + UnsafeAtomics v0.3.0
⌅ [68821587] + Arpack_jll v3.5.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
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  [f43a241f] + Downloads v1.6.0
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  [b77e0a4c] + InteractiveUtils v1.11.0
  [b27032c2] + LibCURL v0.6.4
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  [56ddb016] + Logging v1.11.0
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  [2f01184e] + SparseArrays v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
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  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.41s


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# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:63
Precompiling package dependencies...

Precompilation completed after 140.88s


################################################################################
# Testing
#

     Testing MLJNonnegativeMatrixFactorization
┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920
      Status `/tmp/jl_XKAf8z/Project.toml`
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.118
⌃ [a7f614a8] MLJBase v1.7.0
  [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1
  [697918b4] MLJTestIntegration v0.5.2
  [6ef6ca0d] NMF v1.0.3
  [860ef19b] StableRNGs v1.0.2
  [bd369af6] Tables v1.12.0
  [37e2e46d] LinearAlgebra v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_XKAf8z/Manifest.toml`
  [da404889] ARFFFiles v1.5.0
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  [944b1d66] CodecZlib v0.7.8
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  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [b3c1a2ee] IterationControl v0.5.4
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  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
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  [63c18a36] KernelAbstractions v0.9.34
  [b964fa9f] LaTeXStrings v1.4.0
  [a5e1c1ea] LatinHypercubeSampling v1.9.0
⌅ [92ad9a40] LearnAPI v0.1.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [c2834f40] MLCore v1.0.0
⌅ [64a0f543] MLFlowClient v0.5.1
  [add582a8] MLJ v0.20.7
  [45f359ea] MLJBalancing v0.1.5
⌃ [a7f614a8] MLJBase v1.7.0
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  [e80e1ace] MLJModelInterface v1.11.0
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  [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1
  [697918b4] MLJTestIntegration v0.5.2
  [72560011] MLJTestInterface v0.2.8
  [03970b2e] MLJTuning v0.8.8
  [d8e11817] MLStyle v0.4.17
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  [6ef6ca0d] NMF v1.0.3
  [872c559c] NNlib v0.9.30
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  [636a865e] NearestNeighborModels v0.2.3
  [b8a86587] NearestNeighbors v0.4.21
  [b7351bd1] NonNegLeastSquares v0.4.1
  [8b6db2d4] OpenML v0.3.2
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  [bac558e1] OrderedCollections v1.8.0
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  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
⌅ [aea7be01] PrecompileTools v1.2.1
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  [ae029012] Requires v1.3.1
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  [321657f4] ScientificTypes v3.1.0
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  [7e506255] ScopedValues v1.3.0
  [6c6a2e73] Scratch v1.2.1
  [efcf1570] Setfield v1.1.2
  [605ecd9f] ShowCases v0.1.0
  [777ac1f9] SimpleBufferStream v1.2.0
  [699a6c99] SimpleTraits v0.9.4
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [171d559e] SplittablesBase v0.1.15
  [860ef19b] StableRNGs v1.0.2
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
⌅ [a19d573c] StatisticalMeasures v0.1.7
  [c062fc1d] StatisticalMeasuresBase v0.1.2
  [64bff920] StatisticalTraits v3.4.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
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  [4c63d2b9] StatsFuns v1.4.0
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  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
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⌅ [68821587] Arpack_jll v3.5.1+1
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  [0dad84c5] ArgTools v1.1.2
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling MLJTestIntegration...
   5185.3 ms  ✓ ARFFFiles
   1332.5 ms  ✓ CategoricalArrays → CategoricalArraysJSONExt
   3835.6 ms  ✓ MLFlowClient
   3625.2 ms  ✓ NearestNeighborModels
  42625.0 ms  ✓ StatisticalMeasures
  26329.9 ms  ✓ MLJModels
  12166.3 ms  ✓ MLJEnsembles
  13006.2 ms  ✓ MLJBalancing
  15767.1 ms  ✓ MLJTestInterface
  15195.1 ms  ✓ MLJIteration
  13475.8 ms  ✓ MLJTuning
   6874.3 ms  ✓ OpenML
  13421.1 ms  ✓ MLJFlow
   9066.0 ms  ✓ StatisticalMeasures → ScientificTypesExt
   9100.6 ms  ✓ MLJBase → DefaultMeasuresExt
  22055.1 ms  ✓ MLJ
  41236.5 ms  ✓ MLJTestIntegration
  17 dependencies successfully precompiled in 259 seconds. 192 already precompiled.
Test Summary:     | Pass  Total   Time
cost-functions.jl |    3      3  16.4s
Precompiling NMF...
  31909.6 ms  ✓ NMF
  1 dependency successfully precompiled in 32 seconds. 33 already precompiled.
nmf-base.jl: Test Failed at /home/pkgeval/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:118
  Expression: isapprox(cost, cost2, rtol = 0.001)
   Evaluated: isapprox(1.5401763110434175e-5, 1.8684078767747248e-5; rtol = 0.001)

Stacktrace:
 [1] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined]
 [2] macro expansion
   @ ~/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:118 [inlined]
 [3] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
 [4] top-level scope
   @ ~/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:46
Test Summary: | Pass  Fail  Total     Time
nmf-base.jl   |   12     1     13  1m20.7s
ERROR: LoadError: Some tests did not pass: 12 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:45

Testing failed after 392.41s

ERROR: LoadError: Package MLJNonnegativeMatrixFactorization errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 562.43s: package has test failures