Package evaluation of MDTrajectoryFiles on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T08:25:27.710 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.97s ################################################################################ # Installation # Installing MDTrajectoryFiles... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [e55597f1] + MDTrajectoryFiles v0.1.5 Updating `~/.julia/environments/v1.11/Manifest.toml` [e55597f1] + MDTrajectoryFiles v0.1.5 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 14.73s ################################################################################ # Testing # Testing MDTrajectoryFiles Status `/tmp/jl_HwmPdY/Project.toml` [e55597f1] MDTrajectoryFiles v0.1.5 [90137ffa] StaticArrays v1.9.13 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HwmPdY/Manifest.toml` [e55597f1] MDTrajectoryFiles v0.1.5 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Test XTC read and write | 1 1 4.8s Test Summary: | Pass Total Time Test XTC read and write, 5 atoms trajectory | 1 1 0.0s Test DCD read and write: Error During Test at /home/pkgeval/.julia/packages/MDTrajectoryFiles/qjl1b/test/runtests.jl:50 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/MDTrajectoryFiles/qjl1b/src/data/openmm.dcd": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:176 [2] systemerror @ ./error.jl:175 [inlined] [3] open(fname::String; lock::Bool, read::Bool, write::Nothing, create::Nothing, truncate::Nothing, append::Bool) @ Base ./iostream.jl:295 [4] open @ ./iostream.jl:277 [inlined] [5] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:358 [6] open @ ./iostream.jl:357 [inlined] [7] DcdFile(name::String, mode::String; kwargs::@Kwargs{}) @ MDTrajectoryFiles ~/.julia/packages/MDTrajectoryFiles/qjl1b/src/dcdfiles.jl:94 [8] DcdFile(name::String, mode::String) @ MDTrajectoryFiles ~/.julia/packages/MDTrajectoryFiles/qjl1b/src/dcdfiles.jl:42 [9] macro expansion @ ~/.julia/packages/MDTrajectoryFiles/qjl1b/test/runtests.jl:54 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [11] top-level scope @ ~/.julia/packages/MDTrajectoryFiles/qjl1b/test/runtests.jl:52 [12] include(fname::String) @ Main ./sysimg.jl:38 [13] top-level scope @ none:6 [14] eval @ ./boot.jl:430 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [16] _start() @ Base ./client.jl:531 Test Summary: | Error Total Time Test DCD read and write | 1 1 3.7s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MDTrajectoryFiles/qjl1b/test/runtests.jl:50 Testing failed after 22.35s ERROR: LoadError: Package MDTrajectoryFiles errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 58.71s: package tests unexpectedly errored