Package evaluation of LsqFit on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:01:19.119 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.73s ################################################################################ # Installation # Installing LsqFit... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [2fda8390] + LsqFit v0.15.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [2fda8390] + LsqFit v0.15.1 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 4.41s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 34.7s ################################################################################ # Testing # Testing LsqFit Status `/tmp/jl_b2Pg6l/Project.toml` [31c24e10] Distributions v0.25.118 [f6369f11] ForwardDiff v1.0.1 [2fda8390] LsqFit v0.15.1 [d41bc354] NLSolversBase v7.9.1 [860ef19b] StableRNGs v1.0.2 [82ae8749] StatsAPI v1.7.0 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_b2Pg6l/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [2fda8390] LsqFit v0.15.1 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [860ef19b] StableRNGs v1.0.2 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Testing Running tests... Running tests: * curve_fit.jl 0 4.170164e-01 NaN * lambda: 10.0 1 3.939656e-01 3.085414e-01 * g(x): 0.30854137324099296 * lambda: 1.0 * dx: [0.007651778569387607, 0.032457013681967864] 2 2.598694e-01 2.010318e-01 * g(x): 0.2010318382778667 * lambda: 0.1 * dx: [0.0835813942295759, 0.22193580869898744] 3 3.781482e-02 6.136862e-02 * g(x): 0.06136862056313576 * lambda: 0.010000000000000002 * dx: [0.28666017182558234, 0.6765348862049942] 4 2.795383e-03 6.558707e-03 * g(x): 0.0065587072982348765 * lambda: 0.0010000000000000002 * dx: [0.1439197937151352, 0.5136832633136607] 5 2.464018e-03 1.268328e-04 * g(x): 0.00012683279593612398 * lambda: 0.00010000000000000003 * dx: [0.006874487764080267, 0.07688600991252798] 6 2.463946e-03 3.804713e-08 * g(x): 3.804713202295012e-8 * lambda: 1.0000000000000004e-5 * dx: [-2.6032141009594982e-5, 0.0010869452787025903] 7 2.463946e-03 1.483315e-11 * g(x): 1.4833150116175253e-11 * lambda: 1.0000000000000004e-6 * dx: [-9.84560617912872e-7, -1.300705478449996e-5] 8 2.463946e-03 1.285007e-14 * g(x): 1.2850072568515447e-14 * lambda: 1.0000000000000005e-7 * dx: [1.1890383726874841e-8, 1.6284628778953183e-7] norm(fit.param - [1.0, 2.0]) < 0.05 ? 0.001967888085165314 curve fit: Error During Test at /home/pkgeval/.julia/packages/LsqFit/rHpK1/test/curve_fit.jl:2 Got exception outside of a @test UndefRefError: access to undefined reference Stacktrace: [1] getindex @ ./essentials.jl:917 [inlined] [2] seed! @ ~/.julia/packages/ForwardDiff/Wq9Wb/src/apiutils.jl:76 [inlined] [3] seed! @ ~/.julia/packages/ForwardDiff/Wq9Wb/src/apiutils.jl:75 [inlined] [4] vector_mode_dual_eval!(f!::NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, cfg::ForwardDiff.JacobianConfig{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}}}, y::Vector{BigFloat}, x::Vector{BigFloat}) @ ForwardDiff ~/.julia/packages/ForwardDiff/Wq9Wb/src/apiutils.jl:30 [5] vector_mode_jacobian!(result::Matrix{BigFloat}, f!::NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, y::Vector{BigFloat}, x::Vector{BigFloat}, cfg::ForwardDiff.JacobianConfig{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}}}) @ ForwardDiff ~/.julia/packages/ForwardDiff/Wq9Wb/src/jacobian.jl:157 [6] jacobian! @ ~/.julia/packages/ForwardDiff/Wq9Wb/src/jacobian.jl:82 [inlined] [7] jacobian! @ ~/.julia/packages/DifferentiationInterface/7eD1K/ext/DifferentiationInterfaceForwardDiffExt/twoarg.jl:489 [inlined] [8] (::NLSolversBase.var"#j!#15"{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, DifferentiationInterfaceForwardDiffExt.ForwardDiffTwoArgJacobianPrep{Nothing, ForwardDiff.JacobianConfig{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2, Tuple{Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}, Vector{ForwardDiff.Dual{ForwardDiff.Tag{NLSolversBase.var"#ff!#1"{LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}}, BigFloat}, BigFloat, 2}}}}, Tuple{}}, ADTypes.AutoForwardDiff{2, Nothing}, Vector{BigFloat}})(_j::Matrix{BigFloat}, _x::Vector{BigFloat}) @ NLSolversBase ~/.julia/packages/NLSolversBase/totsP/src/objective_types/oncedifferentiable.jl:85 [9] jacobian!!(obj::OnceDifferentiable{Vector{BigFloat}, Matrix{BigFloat}, Vector{BigFloat}}, J::Matrix{BigFloat}, x::Vector{BigFloat}) @ NLSolversBase ~/.julia/packages/NLSolversBase/totsP/src/interface.jl:142 [10] jacobian!! @ ~/.julia/packages/NLSolversBase/totsP/src/interface.jl:140 [inlined] [11] jacobian! @ ~/.julia/packages/NLSolversBase/totsP/src/interface.jl:135 [inlined] [12] levenberg_marquardt(df::OnceDifferentiable{Vector{BigFloat}, Matrix{BigFloat}, Vector{BigFloat}}, initial_x::Vector{BigFloat}; x_tol::Float64, g_tol::Float64, maxIter::Int64, maxTime::Float64, lambda::BigFloat, tau::BigFloat, lambda_increase::Float64, lambda_decrease::Float64, min_step_quality::Float64, good_step_quality::Float64, show_trace::Bool, store_trace::Bool, lower::Vector{BigFloat}, upper::Vector{BigFloat}, avv!::Nothing) @ LsqFit ~/.julia/packages/LsqFit/rHpK1/src/levenberg_marquardt.jl:174 [13] levenberg_marquardt @ ~/.julia/packages/LsqFit/rHpK1/src/levenberg_marquardt.jl:79 [inlined] [14] lmfit(R::OnceDifferentiable{Vector{BigFloat}, Matrix{BigFloat}, Vector{BigFloat}}, p0::Vector{BigFloat}, wt::Vector{BigFloat}; autodiff::Symbol, kwargs::@Kwargs{}) @ LsqFit ~/.julia/packages/LsqFit/rHpK1/src/curve_fit.jl:82 [15] lmfit @ ~/.julia/packages/LsqFit/rHpK1/src/curve_fit.jl:75 [inlined] [16] lmfit(f::LsqFit.var"#18#20"{var"#model#1", StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{BigFloat}}, p0::Vector{BigFloat}, wt::Vector{BigFloat}; autodiff::Symbol, kwargs::@Kwargs{}) @ LsqFit ~/.julia/packages/LsqFit/rHpK1/src/curve_fit.jl:72 [17] lmfit @ ~/.julia/packages/LsqFit/rHpK1/src/curve_fit.jl:54 [inlined] [18] curve_fit(model::var"#model#1", xdata::StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, ydata::Vector{BigFloat}, p0::Vector{BigFloat}; inplace::Bool, kwargs::@Kwargs{autodiff::Symbol}) @ LsqFit ~/.julia/packages/LsqFit/rHpK1/src/curve_fit.jl:140 [19] macro expansion @ ~/.julia/packages/LsqFit/rHpK1/test/curve_fit.jl:29 [inlined] [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [21] top-level scope @ ~/.julia/packages/LsqFit/rHpK1/test/curve_fit.jl:4 [22] include(fname::String) @ Main ./sysimg.jl:38 [23] top-level scope @ ~/.julia/packages/LsqFit/rHpK1/test/runtests.jl:13 [24] include(fname::String) @ Main ./sysimg.jl:38 [25] top-level scope @ none:6 [26] eval @ ./boot.jl:430 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [28] _start() @ Base ./client.jl:531 Test Summary: | Pass Error Total Time curve fit | 27 1 28 1m57.2s #195 | 2 2 0.1s ERROR: LoadError: Some tests did not pass: 27 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LsqFit/rHpK1/test/curve_fit.jl:2 in expression starting at /home/pkgeval/.julia/packages/LsqFit/rHpK1/test/runtests.jl:11 Testing failed after 130.33s ERROR: LoadError: Package LsqFit errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 192.83s: package tests unexpectedly errored