Package evaluation of LiteQTL on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:00:30.435 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.72s ################################################################################ # Installation # Installing LiteQTL... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [85e3bc59] + LiteQTL v0.2.4 Updating `~/.julia/environments/v1.11/Manifest.toml` Precompiling CUDA_Driver_jll... 4331.6 ms ✓ CUDA_Driver_jll 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. [621f4979] + AbstractFFTs v1.5.0 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 [a9b6321e] + Atomix v1.1.1 ⌅ [ab4f0b2a] + BFloat16s v0.4.2 ⌅ [fa961155] + CEnum v0.4.2 [336ed68f] + CSV v0.10.15 ⌅ [052768ef] + CUDA v5.0.0 ⌅ [1af6417a] + CUDA_Runtime_Discovery v0.2.4 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.0 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] + ExprTools v0.1.10 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [0c68f7d7] + GPUArrays v9.1.0 ⌅ [46192b85] + GPUArraysCore v0.1.5 ⌅ [61eb1bfa] + GPUCompiler v0.24.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 ⌅ [929cbde3] + LLVM v6.6.3 [b964fa9f] + LaTeXStrings v1.4.0 [85e3bc59] + LiteQTL v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 ⌅ [5da4648a] + NVTX v0.3.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.0 [e6cf234a] + RandomNumbers v1.6.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [013be700] + UnsafeAtomics v0.2.1 ⌅ [d80eeb9a] + UnsafeAtomicsLLVM v0.1.5 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [4ee394cb] + CUDA_Driver_jll v0.6.0+4 ⌅ [76a88914] + CUDA_Runtime_jll v0.9.2+4 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 ⌅ [dad2f222] + LLVMExtra_jll v0.0.29+0 [e98f9f5b] + NVTX_jll v3.1.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.88s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling CUDA_Driver_jll... 3251.9 ms ✓ CUDA_Driver_jll 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: LiteQTL Failed to precompile LiteQTL [85e3bc59-379b-574d-918d-c856ad6b8b91] to "/home/pkgeval/.julia/compiled/v1.11/LiteQTL/jl_RtdslZ". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_rzjn8P". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:557 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:1 in expression starting at stdin:6 CUDA Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_8ZXiQp". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [1285c0f1-ff9f-5867-b66e-0f359bcf09ba] to "/home/pkgeval/.julia/compiled/v1.11/SpecialFunctionsExt/jl_nfMo9a". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_omnjSb". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:557 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/ext/SpecialFunctionsExt.jl:3 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 86.17s ################################################################################ # Testing # Testing LiteQTL Status `/tmp/jl_F2mAIt/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [052768ef] CUDA v5.0.0 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.1 [85e3bc59] LiteQTL v0.2.4 [1bc83da4] SafeTestsets v0.1.0 [10745b16] Statistics v1.11.1 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_F2mAIt/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [a9b6321e] Atomix v1.1.1 ⌅ [ab4f0b2a] BFloat16s v0.4.2 ⌅ [fa961155] CEnum v0.4.2 [336ed68f] CSV v0.10.15 ⌅ [052768ef] CUDA v5.0.0 ⌅ [1af6417a] CUDA_Runtime_Discovery v0.2.4 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.1 [e2ba6199] ExprTools v0.1.10 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [0c68f7d7] GPUArrays v9.1.0 ⌅ [46192b85] GPUArraysCore v0.1.5 ⌅ [61eb1bfa] GPUCompiler v0.24.5 [d7ba0133] Git v1.3.1 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 ⌅ [929cbde3] LLVM v6.6.3 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [85e3bc59] LiteQTL v0.2.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [d0879d2d] MarkdownAST v0.1.2 [e1d29d7a] Missings v1.2.0 ⌅ [5da4648a] NVTX v0.3.5 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [013be700] UnsafeAtomics v0.2.1 ⌅ [d80eeb9a] UnsafeAtomicsLLVM v0.1.5 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 ⌅ [4ee394cb] CUDA_Driver_jll v0.6.0+4 ⌅ [76a88914] CUDA_Runtime_jll v0.9.2+4 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 ⌅ [dad2f222] LLVMExtra_jll v0.0.29+0 [94ce4f54] Libiconv_jll v1.18.0+0 [e98f9f5b] NVTX_jll v3.1.1+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling LiteQTL... ✗ CUDA ✗ CUDA → SpecialFunctionsExt ✗ Atomix → AtomixCUDAExt Info Given LiteQTL was explicitly requested, output will be shown live  ERROR: LoadError: InitError: type Nothing has no field major Stacktrace:  [1] getproperty  @ ./Base.jl:49 [inlined]  [2] __init__()  @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64  [3] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1378  [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1366  [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)  @ Base ./loading.jl:1254  [6] _include_from_serialized (repeats 2 times)  @ ./loading.jl:1210 [inlined]  [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2057  [8] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2527  [9] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [10] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [11] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [13] macro expansion  @ ./loading.jl:2314 [inlined]  [14] macro expansion  @ ./lock.jl:273 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [16] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [17] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [18] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [19] include  @ ./Base.jl:557 [inlined]  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2881  [21] top-level scope  @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_q0i5WX". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:35  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3174  [3] (::Base.var"#1110#1111"{Base.PkgId})()  @ Base ./loading.jl:2579  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95  [5] #mkpidlock#6  @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116  [7] #invokelatest#2  @ ./essentials.jl:1057 [inlined]  [8] invokelatest  @ ./essentials.jl:1052 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3698  [10] maybe_cachefile_lock  @ ./loading.jl:3695 [inlined]  [11] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2565  [12] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [13] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [14] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [15] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [16] macro expansion  @ ./loading.jl:2314 [inlined]  [17] macro expansion  @ ./lock.jl:273 [inlined]  [18] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [19] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [20] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [21] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [22] include  @ ./Base.jl:557 [inlined]  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2881  [24] top-level scope  @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:1 in expression starting at stdin:6 ✗ LiteQTL 0 dependencies successfully precompiled in 52 seconds. 129 already precompiled. ERROR: LoadError: The following 3 direct dependencies failed to precompile: LiteQTL Failed to precompile LiteQTL [85e3bc59-379b-574d-918d-c856ad6b8b91] to "/home/pkgeval/.julia/compiled/v1.11/LiteQTL/jl_aSQ200". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_q0i5WX". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:557 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/src/LiteQTL.jl:1 in expression starting at stdin:6 CUDA Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_bsjDTj". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [1285c0f1-ff9f-5867-b66e-0f359bcf09ba] to "/home/pkgeval/.julia/compiled/v1.11/SpecialFunctionsExt/jl_Elmy2p". ERROR: LoadError: InitError: type Nothing has no field major Stacktrace: [1] getproperty @ ./Base.jl:49 [inlined] [2] __init__() @ GPUCompiler ~/.julia/packages/GPUCompiler/2mJjc/src/GPUCompiler.jl:64 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [6] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [8] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [9] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [10] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [11] invoke_in_world @ ./essentials.jl:1086 [inlined] [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [13] macro expansion @ ./loading.jl:2314 [inlined] [14] macro expansion @ ./lock.jl:273 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [16] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [17] invoke_in_world @ ./essentials.jl:1086 [inlined] [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [19] include @ ./Base.jl:557 [inlined] [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [21] top-level scope @ stdin:6 during initialization of module GPUCompiler in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/src/CUDA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile CUDA [052768ef-5323-5732-b1bb-66c8b64840ba] to "/home/pkgeval/.julia/compiled/v1.11/CUDA/jl_W8iTZc". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:557 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/CUDA/nbRJk/ext/SpecialFunctionsExt.jl:3 in expression starting at stdin:6 in expression starting at /home/pkgeval/.julia/packages/LiteQTL/X0a1l/test/runtests.jl:1 Testing failed after 67.75s ERROR: LoadError: Package LiteQTL errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 200.96s: package fails to precompile