Package evaluation of LinearNoiseApproximation on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T22:19:27.721


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.69s


################################################################################
# Installation
#

Installing LinearNoiseApproximation...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [9859b720] + LinearNoiseApproximation v0.1.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
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  [ec485272] + ArnoldiMethod v0.4.0
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  [e2ed5e7c] + Bijections v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [00ebfdb7] + CSTParser v3.4.3
⌅ [479239e8] + Catalyst v13.5.1
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  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.2
⌅ [a80b9123] + CommonMark v0.8.16
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⌅ [459566f4] + DiffEqCallbacks v2.37.0
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  [d3d80556] + LineSearches v7.3.0
  [9859b720] + LinearNoiseApproximation v0.1.1
⌅ [7ed4a6bd] + LinearSolve v2.39.1
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⌃ [8913a72c] + NonlinearSolve v3.15.1
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⌃ [4302a76b] + OrdinaryDiffEqDifferentiation v1.4.0
  [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] + OrdinaryDiffEqExponentialRK v1.4.0
  [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0
⌃ [5960d6e9] + OrdinaryDiffEqFIRK v1.9.0
  [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] + OrdinaryDiffEqIMEXMultistep v1.3.0
  [521117fe] + OrdinaryDiffEqLinear v1.1.0
  [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0
⌃ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.5.0
  [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.0
  [5b33eab2] + OrdinaryDiffEqPRK v1.1.0
  [04162be5] + OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] + OrdinaryDiffEqRKN v1.1.0
⌃ [43230ef6] + OrdinaryDiffEqRosenbrock v1.8.0
  [2d112036] + OrdinaryDiffEqSDIRK v1.3.0
  [669c94d9] + OrdinaryDiffEqSSPRK v1.2.1
  [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0
  [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] + OrdinaryDiffEqVerner v1.1.1
  [90014a1f] + PDMats v0.11.33
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [d96e819e] + Parameters v0.12.3
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  [d236fae5] + PreallocationTools v0.4.26
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
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⌅ [727e6d20] + SimpleNonlinearSolve v1.12.4
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⌅ [d1185830] + SymbolicUtils v1.7.1
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 7.7s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 7 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#816 at ./asyncevent.jl:311
jfptr_YY.816_67229.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x000079b839f32270 Total snapshots: 269. Utilization: 0%
   ╎269 @Base/asyncevent.jl:311; (::Base.var"#816#817"{FileWatching.Pidfile.var…
   ╎ 269 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  269 @Base/condition.jl:125; wait
   ╎   269 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    269 @Base/task.jl:1021; wait()
268╎     269 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
task_done_hook at ./task.jl:694
jfptr_task_done_hook_66630.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
jl_finish_task at /source/src/task.c:319
start_task at /source/src/task.c:1213
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x0000714b21bc2ef0 Total snapshots: 319. Utilization: 0%
   ╎319 @Base/task.jl:694; task_done_hook(t::Task)
   ╎ 319 @Base/task.jl:1021; wait()
318╎  319 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[7] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#731 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
wait_readnb at ./stream.jl:416
eof at ./stream.jl:106

PkgEval terminated after 2764.48s: test duration exceeded the time limit