Package evaluation of LimberJack on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T13:16:36.258 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.76s ################################################################################ # Installation # Installing LimberJack... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [6b86205d] + LimberJack v0.1.6 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [992eb4ea] + CondaPkg v0.2.27 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [5789e2e9] + FileIO v1.17.0 ⌅ [a98d9a8b] + Interpolations v0.14.7 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [6b86205d] + LimberJack v0.1.6 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [15e1cf62] + NPZ v0.4.3 ⌃ [e7bfaba1] + NumericalIntegration v0.2.0 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [a5390f91] + ZipFile v0.10.1 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 2.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 92.61s ################################################################################ # Testing # Testing LimberJack ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1920 Status `/tmp/jl_h3jged/Project.toml` ⌅ [f6369f11] ForwardDiff v0.10.38 [6b86205d] LimberJack v0.1.6 [15e1cf62] NPZ v0.4.3 [10745b16] Statistics v1.11.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_h3jged/Manifest.toml` ⌅ [79e6a3ab] Adapt v3.7.2 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.27 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [5789e2e9] FileIO v1.17.0 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [a98d9a8b] Interpolations v0.14.7 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [6b86205d] LimberJack v0.1.6 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 ⌃ [e7bfaba1] NumericalIntegration v0.2.0 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [e17b2a0c] UnsafePointers v1.0.0 ⌅ [efce3f68] WoodburyMatrices v0.5.6 [a5390f91] ZipFile v0.10.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Resolving changes + libstdcxx-ng + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_h3jged/.CondaPkg ✔ Created /tmp/jl_h3jged/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_h3jged/.CondaPkg/pixi.toml │ [dependencies] │ libstdcxx-ng = ">=3.4,<13.0" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_h3jged/.CondaPkg/pixi.toml ✔ The default environment has been installed. testing main functions Main tests: Error During Test at /home/pkgeval/.julia/packages/LimberJack/Arqb1/test/runtests.jl:39 Got exception outside of a @test SystemError: opening file "test_output.npz": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:176 [2] systemerror @ ./error.jl:175 [inlined] [3] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:295 [4] open @ ./iostream.jl:277 [inlined] [5] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:358 [6] open @ ./iostream.jl:357 [inlined] [7] Writer @ ~/.julia/packages/ZipFile/yQ7yx/src/ZipFile.jl:179 [inlined] [8] npzwrite(filename::String, vars::Dict{String, Vector}) @ NPZ ~/.julia/packages/NPZ/UCofn/src/NPZ.jl:429 [9] macro expansion @ ~/.julia/packages/LimberJack/Arqb1/test/runtests.jl:770 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [11] top-level scope @ ~/.julia/packages/LimberJack/Arqb1/test/runtests.jl:40 [12] include(fname::String) @ Main ./sysimg.jl:38 [13] top-level scope @ none:6 [14] eval @ ./boot.jl:430 [inlined] [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [16] _start() @ Base ./client.jl:531 Test Summary: | Pass Error Total Time Main tests | 78 1 79 8m30.8s CreateCosmo | 1 1 0.0s BMHz | 1 1 2.0s BMChi | 2 2 0.5s BMGrowth | 3 3 1.2s linear_Pk_σ8 | 2 2 1.3s linear_Pk_As | 1 1 0.0s nonlinear_Pk | 8 8 2.2s Traces | 3 3 7.6s EisHu_Cℓs | 6 6 8.2s nonlin_EisHu_Cℓs | 6 6 1.9s emul_Cℓs | 6 6 0.0s EisHu_Halo_Cℓs | 6 6 0.0s emul_Halo_Cℓs | 6 6 0.0s IsBaseDiff | 3 3 1m24.9s IsLinPkDiff | 2 2 1m03.3s IsNonlinPkDiff | 8 8 57.2s AreClsDiff | 6 6 3m41.5s Nuisances | 3 3 3.0s AreNuisancesDiff | 5 5 51.7s ERROR: LoadError: Some tests did not pass: 78 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LimberJack/Arqb1/test/runtests.jl:28 Testing failed after 678.69s ERROR: LoadError: Package LimberJack errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 796.97s: package tests unexpectedly errored