Package evaluation of LightGraphsExtras on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:04:15.713 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.83s ################################################################################ # Installation # Installing LightGraphsExtras... Resolving package versions... Installed Homebrew ─ v0.7.1 Installed GLPK ───── v0.7.0 Updating `~/.julia/environments/v1.11/Project.toml` [89bd72ed] + LightGraphsExtras v0.3.0 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.1.0 ⌅ [9e28174c] + BinDeps v0.8.10 [49dc2e85] + Calculus v0.5.2 [bbf7d656] + CommonSubexpressions v0.3.1 ⌅ [34da2185] + Compat v2.2.1 ⌃ [864edb3b] + DataStructures v0.17.20 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 ⌅ [f6369f11] + ForwardDiff v0.10.38 ⌅ [60bf3e95] + GLPK v0.7.0 [3c7084bd] + GLPKMathProgInterface v0.5.0 ⌅ [92fee26a] + GZip v0.5.2 [d9be37ee] + Homebrew v0.7.1 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 ⌅ [4076af6c] + JuMP v0.18.6 [093fc24a] + LightGraphs v1.3.5 [89bd72ed] + LightGraphsExtras v0.3.0 ⌃ [2f5eb75a] + LightGraphsFlows v0.3.1 ⌅ [f8899e07] + LinQuadOptInterface v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 ⌅ [b8f27783] + MathOptInterface v0.5.1 [fdba3010] + MathProgBase v0.7.8 ⌅ [b51810bb] + MatrixDepot v0.7.0 ⌅ [77ba4419] + NaNMath v0.3.7 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [89212889] + ReverseDiffSparse v0.8.6 [699a6c99] + SimpleTraits v0.9.4 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [30578b45] + URIParser v0.4.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Homebrew → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f01fb2f34675f9839d55ba7238bab63ebd2e531e/build.log` Building GLPK ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/ec92e88edf48471e7e0983b22e0b4a13e24900c7/build.log` Installation failed after 27.85s ERROR: LoadError: Error building `GLPK`: % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 4019k 100 4019k 0 0 9321k 0 --:--:-- --:--:-- --:--:-- 9326k checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for exp in -lm... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for gettimeofday... yes checking gmp.h usability... no checking gmp.h presence... no checking for gmp.h... no configure: error: gmp.h header not found [ Info: Attempting to create directory /home/pkgeval/.julia/packages/GLPK/vPY13/deps/downloads [ Info: Downloading file http://ftp.gnu.org/gnu/glpk/glpk-4.61.tar.gz [ Info: Done downloading file http://ftp.gnu.org/gnu/glpk/glpk-4.61.tar.gz [ Info: Attempting to create directory /home/pkgeval/.julia/packages/GLPK/vPY13/deps/src [ Info: Attempting to create directory /home/pkgeval/.julia/packages/GLPK/vPY13/deps [ Info: Directory /home/pkgeval/.julia/packages/GLPK/vPY13/deps already exists [ Info: Attempting to create directory /home/pkgeval/.julia/packages/GLPK/vPY13/deps/builds/libglpk [ Info: Changing directory to /home/pkgeval/.julia/packages/GLPK/vPY13/deps/builds/libglpk ERROR: LoadError: failed process: Process(setenv(`/home/pkgeval/.julia/packages/GLPK/vPY13/deps/src/glpk-4.61/configure --with-gmp --prefix=/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr`,["PYTHON=", "LANG=C.UTF-8", "PATH=/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "OPENBLAS_MAIN_FREE=1", "CPPFLAGS= -I/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr/include -I/opt/julia//include", "LDFLAGS= -L/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr/lib -L/opt/julia//lib -Wl,-rpath -Wl,/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr/lib", "JULIA_CPU_THREADS=1", "JULIA_NUM_PRECOMPILE_TASKS=1", "DISPLAY=:1", "PKG_CONFIG_PATH=/home/pkgeval/.julia/packages/GLPK/vPY13/deps/usr/lib/pkgconfig", "JULIA_LOAD_PATH=@:/tmp/jl_HYkE0Q", "PKGEVAL=true", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKG_PRECOMPILE_AUTO=0", "JULIA_PKGEVAL=true", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "R_HOME=*", "HOME=/home/pkgeval"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:598 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:513 [3] run(::Cmd) @ Base ./process.jl:510 [4] run(s::BinDeps.SynchronousStepCollection) @ BinDeps ~/.julia/packages/BinDeps/ZEval/src/BinDeps.jl:521 [5] run(s::FileRule) @ BinDeps ~/.julia/packages/BinDeps/ZEval/src/BinDeps.jl:483 [6] run(s::BinDeps.SynchronousStepCollection) (repeats 2 times) @ BinDeps ~/.julia/packages/BinDeps/ZEval/src/BinDeps.jl:521 [7] satisfy!(dep::BinDeps.LibraryDependency, methods::Vector{DataType}) @ BinDeps ~/.julia/packages/BinDeps/ZEval/src/dependencies.jl:944 [8] satisfy!(dep::BinDeps.LibraryDependency) @ BinDeps ~/.julia/packages/BinDeps/ZEval/src/dependencies.jl:922 [9] macro expansion @ ~/.julia/packages/BinDeps/ZEval/src/dependencies.jl:977 [inlined] [10] top-level scope @ ~/.julia/packages/GLPK/vPY13/deps/build.jl:975 [11] include(fname::String) @ Main ./sysimg.jl:38 [12] top-level scope @ none:5 in expression starting at /home/pkgeval/.julia/packages/GLPK/vPY13/deps/build.jl:51 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1191 [3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 [5] with_temp_env(fn::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 [6] (::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 [7] mktempdir(fn::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:819 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:815 [9] mktempdir @ ./file.jl:815 [inlined] [10] #sandbox#115 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1172 [12] build_versions @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1090 [inlined] [13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1468 [14] add @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1414 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:312 [16] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [17] add(pkgs::Vector{Pkg.Types.PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 [18] add(pkg::Pkg.Types.PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [19] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 59.77s: package could not be installed