Package evaluation of LightGBM on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T09:47:38.828


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.06s


################################################################################
# Installation
#

Installing LightGBM...
   Resolving package versions...
   Installed LightGBM ─ v2.0.0
    Updating `~/.julia/environments/v1.11/Project.toml`
  [7acf609c] + LightGBM v2.0.0
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.0
  [7acf609c] + LightGBM v2.0.0
  [e80e1ace] + MLJModelInterface v1.11.0
  [21216c6a] + Preferences v1.4.3
  [30f210dd] + ScientificTypesBase v3.0.0
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [1d63c593] + LLVMOpenMP_jll v18.1.7+0
⌅ [0e4427ef] + LightGBM_jll v3.3.5+1
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building LightGBM → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/fa2e05581f7393693de1c3a3ca79ae2ded9394ac/build.log`

Installation completed after 11.54s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 374.46s


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# Testing
#

     Testing LightGBM
      Status `/tmp/jl_mcatg1/Project.toml`
  [324d7699] CategoricalArrays v0.10.8
  [8bb1440f] DelimitedFiles v1.9.1
  [7acf609c] LightGBM v2.0.0
  [a7f614a8] MLJBase v1.8.1
  [a19d573c] StatisticalMeasures v0.2.1
  [ade2ca70] Dates v1.11.0
  [8f399da3] Libdl v1.11.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_mcatg1/Manifest.toml`
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [a9b6321e] Atomix v1.1.1
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [324d7699] CategoricalArrays v0.10.8
  [af321ab8] CategoricalDistributions v0.1.15
  [d360d2e6] ChainRulesCore v1.25.1
  [3da002f7] ColorTypes v0.12.1
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [ed09eef8] ComputationalResources v0.3.2
  [187b0558] ConstructionBase v1.5.8
  [6add18c4] ContextVariablesX v0.1.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.118
  [ffbed154] DocStringExtensions v0.9.4
  [cc61a311] FLoops v0.2.2
  [b9860ae5] FLoopsBase v0.1.1
  [1a297f60] FillArrays v1.13.0
  [53c48c17] FixedPointNumbers v0.8.5
  [46192b85] GPUArraysCore v0.2.0
  [076d061b] HashArrayMappedTries v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [22cec73e] InitialValues v0.3.1
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b14d175d] JuliaVariables v0.2.4
  [63c18a36] KernelAbstractions v0.9.34
  [b964fa9f] LaTeXStrings v1.4.0
  [92ad9a40] LearnAPI v1.0.1
  [7acf609c] LightGBM v2.0.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [c2834f40] MLCore v1.0.0
  [a7f614a8] MLJBase v1.8.1
  [e80e1ace] MLJModelInterface v1.11.0
  [d8e11817] MLStyle v0.4.17
  [f1d291b0] MLUtils v0.4.8
  [1914dd2f] MacroTools v0.5.15
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [872c559c] NNlib v0.9.30
  [71a1bf82] NameResolution v0.1.5
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.33
  [d96e819e] Parameters v0.12.3
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [8162dcfd] PrettyPrint v0.2.0
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [321657f4] ScientificTypes v3.1.0
  [30f210dd] ScientificTypesBase v3.0.0
  [7e506255] ScopedValues v1.3.0
  [efcf1570] Setfield v1.1.2
  [605ecd9f] ShowCases v0.1.0
  [699a6c99] SimpleTraits v0.9.4
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [171d559e] SplittablesBase v0.1.15
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [a19d573c] StatisticalMeasures v0.2.1
  [c062fc1d] StatisticalMeasuresBase v0.1.2
  [64bff920] StatisticalTraits v3.4.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.4.0
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [28d57a85] Transducers v0.4.84
  [3a884ed6] UnPack v1.0.2
  [013be700] UnsafeAtomics v0.3.0
  [1d63c593] LLVMOpenMP_jll v18.1.7+0
⌅ [0e4427ef] LightGBM_jll v3.3.5+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [8e850b90] libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
[ Info: lib_lightgbm found in system dirs!
[LightGBM] [Fatal] Size of feature_names error, should equal with total number of features
[LightGBM] [Fatal] Size of feature_names error, should equal with total number of features
[LightGBM] [Fatal] Size of feature_names error, should equal with total number of features
[LightGBM] [Fatal] Size of feature_names error, should equal with total number of features
[LightGBM] [Fatal] Could not find ignore column any_column in data file
[LightGBM] [Fatal] Unknown token label in data file
[LightGBM] [Fatal] Could not find group/query column some_column in data file
[LightGBM] [Fatal] [Used indices of subset]: does not tolerate element [#1 = 4] outside [0, 2]
[LightGBM] [Fatal] Input data type error or field not found
[LightGBM] [Warning] Feature (Column_0) is missed in data file. If it is weight/query/group/ignore_column, you can ignore this warning.
[LightGBM] [Warning] Feature (Column_1) is missed in data file. If it is weight/query/group/ignore_column, you can ignore this warning.
[LightGBM] [Warning] Contains only one class
[LightGBM] [Info] Number of positive: 0, number of negative: 3
[LightGBM] [Info] Total Bins 0
[LightGBM] [Info] Number of data points in the train set: 3, number of used features: 0
[LightGBM] [Warning] Contains only one class
[LightGBM] [Info] Number of positive: 0, number of negative: 3
[LightGBM] [Info] Total Bins 0
[LightGBM] [Info] Number of data points in the train set: 3, number of used features: 0
Test Summary:  | Pass  Broken  Total   Time
FFI unit tests |  256       3    259  34.0s
Precompiling MLJBase...
   3428.1 ms  ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt
   3157.7 ms  ✓ NNlib → NNlibSpecialFunctionsExt
  52125.2 ms  ✓ MLUtils
   3646.8 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   7378.7 ms  ✓ CategoricalDistributions
  55708.0 ms  ✓ StatisticalMeasuresBase
 171211.3 ms  ✓ MLJBase
  7 dependencies successfully precompiled in 299 seconds. 136 already precompiled.
Precompiling StatisticalMeasures...
  42478.4 ms  ✓ StatisticalMeasures
   6901.2 ms  ✓ StatisticalMeasures → ScientificTypesExt
  2 dependencies successfully precompiled in 50 seconds. 134 already precompiled.
Precompiling DefaultMeasuresExt...
   7040.0 ms  ✓ MLJBase → DefaultMeasuresExt
  1 dependency successfully precompiled in 8 seconds. 145 already precompiled.
[LightGBM] [Warning] Auto-choosing col-wise multi-threading, the overhead of testing was 0.000332 seconds.
You can set `force_col_wise=true` to remove the overhead.
[LightGBM] [Info] Total Bins 1670
[LightGBM] [Info] Number of data points in the train set: 500, number of used features: 10
[LightGBM] [Info] Start training from score 0.077708
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
Test Summary:       | Pass  Total     Time
MLJ interface tests |   75     75  7m24.1s
[ Info: lib_not_on_sys not found in system dirs, trying fallback
[ Info: libcrypt found in system dirs!
[ Info: lib_that_simply_doesnt_exist not found in system dirs, trying fallback
Test Summary: | Pass  Total     Time
Basic tests   |  168    168  1m21.7s
(OLD) Basic Tests: Error During Test at /home/pkgeval/.julia/packages/LightGBM/xQZ0z/test/runtests.jl:91
  Got exception outside of a @test
  LoadError: KeyError: key "LIGHTGBM_EXAMPLES_PATH" not found
  Stacktrace:
    [1] (::Base.var"#807#808")(k::String)
      @ Base ./env.jl:164
    [2] access_env
      @ ./env.jl:60 [inlined]
    [3] getindex(::Base.EnvDict, k::String)
      @ Base ./env.jl:164
    [4] top-level scope
      @ ~/.julia/packages/LightGBM/xQZ0z/test/integration/basic_tests.jl:7
    [5] include(fname::String)
      @ Main ./sysimg.jl:38
    [6] macro expansion
      @ ~/.julia/packages/LightGBM/xQZ0z/test/runtests.jl:92 [inlined]
    [7] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
    [8] macro expansion
      @ ~/.julia/packages/LightGBM/xQZ0z/test/runtests.jl:92 [inlined]
    [9] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
   [10] top-level scope
      @ ~/.julia/packages/LightGBM/xQZ0z/test/runtests.jl:91
   [11] include(fname::String)
      @ Main ./sysimg.jl:38
   [12] top-level scope
      @ none:6
   [13] eval
      @ ./boot.jl:430 [inlined]
   [14] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:296
   [15] _start()
      @ Base ./client.jl:531
  in expression starting at /home/pkgeval/.julia/packages/LightGBM/xQZ0z/test/integration/basic_tests.jl:1
weightsTest.jl: Test Failed at /home/pkgeval/.julia/packages/LightGBM/xQZ0z/test/integration/weightsTest.jl:50
  Expression: false

Stacktrace:
 [1] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined]
 [2] macro expansion
   @ ~/.julia/packages/LightGBM/xQZ0z/test/integration/weightsTest.jl:50 [inlined]
 [3] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
 [4] top-level scope
   @ ~/.julia/packages/LightGBM/xQZ0z/test/integration/weightsTest.jl:10
initScoreTest.jl: Test Failed at /home/pkgeval/.julia/packages/LightGBM/xQZ0z/test/integration/initScoreTest.jl:50
  Expression: false

Stacktrace:
 [1] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined]
 [2] macro expansion
   @ ~/.julia/packages/LightGBM/xQZ0z/test/integration/initScoreTest.jl:50 [inlined]
 [3] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined]
 [4] top-level scope
   @ ~/.julia/packages/LightGBM/xQZ0z/test/integration/initScoreTest.jl:13
[LightGBM] [Warning] Auto-choosing col-wise multi-threading, the overhead of testing was 0.000231 seconds.
You can set `force_col_wise=true` to remove the overhead.
[LightGBM] [Info] Total Bins 12
[LightGBM] [Info] Number of data points in the train set: 8, number of used features: 3
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] No further splits with positive gain, best gain: -inf
[LightGBM] [Warning] Stopped training because there are no more leaves that meet the split requirements
Test Summary:        | Pass  Fail  Error  Total   Time
Integration tests    |    2     2      1      5  19.2s
  (OLD) Basic Tests  |                 1      1  10.4s
  Weights Test       |          1             1   4.1s
    weightsTest.jl   |          1             1   4.1s
  Init Score Test    |          1             1   0.1s
    initScoreTest.jl |          1             1   0.0s
  Group Query Test   |    2                   2   4.7s
ERROR: LoadError: Some tests did not pass: 2 passed, 2 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/LightGBM/xQZ0z/test/runtests.jl:89

Testing failed after 584.66s

ERROR: LoadError: Package LightGBM errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124
 [3] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined]
 [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
 [6] test
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
 [7] #test#74
   @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
 [8] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:219
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 999.82s: package tests unexpectedly errored