Package evaluation of LaplacianExpectationMaximization on Julia 1.11.4 (8561cc3d68*) started at 2025-04-08T16:59:09.545 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.57s ################################################################################ # Installation # Installing LaplacianExpectationMaximization... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [610349f3] + LaplacianExpectationMaximization v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.26 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.12 [692b3bcd] + JLLWrappers v1.7.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [3bd65402] + Optimisers v0.4.6 [65fa8838] + OptimizationCallbacks v0.1.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 549.2s ################################################################################ # Testing # Testing LaplacianExpectationMaximization Status `/tmp/jl_suEu2z/Project.toml` ⌃ [47edcb42] ADTypes v1.11.0 ⌃ [4c88cf16] Aqua v0.8.9 ⌃ [b0b7db55] ComponentArrays v0.15.19 [2569d6c7] ConcreteStructs v0.2.3 ⌃ [31c24e10] Distributions v0.25.113 ⌃ [7da242da] Enzyme v0.13.16 ⌃ [6a86dc24] FiniteDiff v2.26.2 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [c3a54625] JET v0.9.12 ⌃ [033835bb] JLD2 v0.5.10 [610349f3] LaplacianExpectationMaximization v0.1.0 ⌃ [2ab3a3ac] LogExpFunctions v0.3.28 ⌃ [76087f3c] NLopt v1.1.1 ⌃ [3bd65402] Optimisers v0.4.1 ⌃ [7f7a1694] Optimization v4.0.5 [36348300] OptimizationOptimJL v0.4.1 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_suEu2z/Manifest.toml` ⌃ [47edcb42] ADTypes v1.11.0 [1520ce14] AbstractTrees v0.4.5 ⌃ [7d9f7c33] Accessors v0.1.38 ⌃ [79e6a3ab] Adapt v4.1.1 [66dad0bd] AliasTables v1.1.3 ⌃ [4c88cf16] Aqua v0.8.9 ⌃ [4fba245c] ArrayInterface v7.17.1 [fa961155] CEnum v0.5.0 ⌃ [d360d2e6] ChainRulesCore v1.25.0 ⌃ [da1fd8a2] CodeTracking v1.3.6 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 ⌃ [b0b7db55] ComponentArrays v0.15.19 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 ⌃ [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌃ [a0c0ee7d] DifferentiationInterface v0.6.23 ⌃ [31c24e10] Distributions v0.25.113 ⌃ [ffbed154] DocStringExtensions v0.9.3 ⌃ [4e289a0a] EnumX v1.0.4 ⌃ [7da242da] Enzyme v0.13.16 ⌃ [f151be2c] EnzymeCore v0.8.6 [e2ba6199] ExprTools v0.1.10 ⌅ [6b7a57c9] Expronicon v0.8.5 [9aa1b823] FastClosures v0.3.2 ⌃ [5789e2e9] FileIO v1.16.6 [1a297f60] FillArrays v1.13.0 ⌃ [6a86dc24] FiniteDiff v2.26.2 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌃ [d9f16b24] Functors v0.5.1 [46192b85] GPUArraysCore v0.2.0 ⌅ [61eb1bfa] GPUCompiler v1.0.1 ⌃ [34004b35] HypergeometricFunctions v0.3.25 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 ⌃ [92d709cd] IrrationalConstants v0.2.2 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.12 ⌃ [033835bb] JLD2 v0.5.10 ⌃ [692b3bcd] JLLWrappers v1.6.1 ⌃ [aa1ae85d] JuliaInterpreter v0.9.38 [5be7bae1] LBFGSB v0.4.1 ⌃ [929cbde3] LLVM v9.1.3 [610349f3] LaplacianExpectationMaximization v0.1.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.3.0 ⌃ [2ab3a3ac] LogExpFunctions v0.3.28 [e6f89c97] LoggingExtras v1.1.0 [6f1432cf] LoweredCodeUtils v3.1.0 [d8e11817] MLStyle v0.4.17 ⌃ [1914dd2f] MacroTools v0.5.13 [e1d29d7a] Missings v1.2.0 ⌃ [d41bc354] NLSolversBase v7.8.3 ⌃ [76087f3c] NLopt v1.1.1 ⌃ [77ba4419] NaNMath v1.0.2 ⌃ [d8793406] ObjectFile v0.4.2 ⌃ [429524aa] Optim v1.10.0 ⌃ [3bd65402] Optimisers v0.4.1 ⌃ [7f7a1694] Optimization v4.0.5 ⌃ [bca83a33] OptimizationBase v2.4.0 [65fa8838] OptimizationCallbacks v0.1.0 [36348300] OptimizationOptimJL v0.4.1 ⌃ [bac558e1] OrderedCollections v1.6.3 ⌃ [90014a1f] PDMats v0.11.31 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [33c8b6b6] ProgressLogging v0.1.4 ⌃ [92933f4c] ProgressMeter v1.10.2 ⌃ [43287f4e] PtrArrays v1.2.1 ⌃ [1fd47b50] QuadGK v2.11.1 [3cdcf5f2] RecipesBase v1.3.4 ⌃ [731186ca] RecursiveArrayTools v3.27.4 [189a3867] Reexport v1.2.2 ⌃ [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 ⌃ [0bca4576] SciMLBase v2.64.0 ⌃ [c0aeaf25] SciMLOperators v0.3.12 ⌃ [53ae85a6] SciMLStructures v1.6.1 [6c6a2e73] Scratch v1.2.1 ⌃ [efcf1570] Setfield v1.1.1 [a2af1166] SortingAlgorithms v1.2.1 ⌃ [9f842d2f] SparseConnectivityTracer v0.6.9 ⌃ [0a514795] SparseMatrixColorings v0.4.10 ⌃ [276daf66] SpecialFunctions v2.4.0 ⌃ [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌃ [2913bbd2] StatsBase v0.34.3 ⌃ [4c63d2b9] StatsFuns v1.3.2 [53d494c1] StructIO v0.3.1 ⌃ [2efcf032] SymbolicIndexingInterface v0.3.35 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [5d786b92] TerminalLoggers v0.1.7 ⌃ [a759f4b9] TimerOutputs v0.5.25 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 ⌅ [7cc45869] Enzyme_jll v0.0.165+0 ⌅ [dad2f222] LLVMExtra_jll v0.0.34+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 ⌃ [079eb43e] NLopt_jll v2.8.0+0 ⌃ [efe28fd5] OpenSpecFun_jll v0.5.5+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling LaplacianExpectationMaximization... 3934.1 ms ✓ ADTypes 918.7 ms ✓ PtrArrays 1352.7 ms ✓ Functors 1554.0 ms ✓ FiniteDiff 1425.0 ms ✓ Rmath_jll 1368.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 3949.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2848.1 ms ✓ StaticArrayInterface 2306.4 ms ✓ QuadGK 4196.2 ms ✓ StatsBase 4440.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2724.3 ms ✓ HypergeometricFunctions 53585.6 ms ✓ JLD2 958.2 ms ✓ ADTypes → ADTypesChainRulesCoreExt 728.2 ms ✓ ADTypes → ADTypesConstructionBaseExt 869.5 ms ✓ AliasTables 4901.2 ms ✓ Optimisers 1077.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 2589.6 ms ✓ NLSolversBase 2855.4 ms ✓ Rmath 5275.1 ms ✓ ComponentArrays 8447.8 ms ✓ OptimizationCallbacks 5089.1 ms ✓ LineSearches 8748.6 ms ✓ StatsFuns 2536.6 ms ✓ ComponentArrays → ComponentArraysOptimisersExt 14825.7 ms ✓ Optim 4162.1 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 11970.9 ms ✓ Distributions 5443.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 92145.0 ms ✓ LaplacianExpectationMaximization 30 dependencies successfully precompiled in 261 seconds. 83 already precompiled. Precompiling Optimization... 1482.0 ms ✓ DifferentiationInterface 684.6 ms ✓ SciMLStructures 4298.6 ms ✓ Accessors 8590.3 ms ✓ SparseConnectivityTracer 2646.6 ms ✓ SparseMatrixColorings 1310.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1886.3 ms ✓ Accessors → AccessorsDatesExt 3907.8 ms ✓ SciMLOperators 3213.7 ms ✓ SymbolicIndexingInterface 1555.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1121.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1475.5 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4381.3 ms ✓ RecursiveArrayTools 2085.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 27321.6 ms ✓ SciMLBase 5039.3 ms ✓ OptimizationBase 5088.1 ms ✓ Optimization 17 dependencies successfully precompiled in 77 seconds. 87 already precompiled. Precompiling LogExpFunctionsInverseFunctionsExt... 809.2 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1 dependency successfully precompiled in 1 seconds. 12 already precompiled. Precompiling StatsFunsInverseFunctionsExt... 1668.3 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. Precompiling ComponentArraysRecursiveArrayToolsExt... 1949.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1746.8 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 2 dependencies successfully precompiled in 4 seconds. 80 already precompiled. Precompiling ComponentArraysSciMLBaseExt... 2683.3 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2856.5 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 2 dependencies successfully precompiled in 6 seconds. 97 already precompiled. Precompiling DifferentiationInterfaceForwardDiffExt... 1879.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 41 already precompiled. Precompiling DifferentiationInterfaceFiniteDiffExt... 3234.4 ms ✓ Setfield 842.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2 dependencies successfully precompiled in 4 seconds. 16 already precompiled. Precompiling DifferentiationInterfaceChainRulesCoreExt... 826.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling SparseConnectivityTracerSpecialFunctionsExt... 2328.5 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerLogExpFunctionsExt 3608.6 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerSpecialFunctionsExt 2 dependencies successfully precompiled in 6 seconds. 39 already precompiled. Precompiling SparseConnectivityTracerNaNMathExt... 2684.5 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerNaNMathExt 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling OptimizationFiniteDiffExt... 745.0 ms ✓ OptimizationBase → OptimizationFiniteDiffExt 1 dependency successfully precompiled in 1 seconds. 97 already precompiled. Precompiling OptimizationForwardDiffExt... 1675.0 ms ✓ OptimizationBase → OptimizationForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 110 already precompiled. Precompiling OptimizationExt... 11408.2 ms ✓ LaplacianExpectationMaximization → OptimizationExt 1 dependency successfully precompiled in 14 seconds. 173 already precompiled. Precompiling OptimizationOptimJL... 30811.9 ms ✓ OptimizationOptimJL 1 dependency successfully precompiled in 32 seconds. 137 already precompiled. Precompiling Enzyme... 1015.5 ms ✓ EnzymeCore 4374.4 ms ✓ ObjectFile 3700.6 ms ✓ Enzyme_jll 4374.8 ms ✓ LLVMExtra_jll 13585.0 ms ✓ LLVM 34967.0 ms ✓ GPUCompiler 303007.3 ms ✓ Enzyme 7 dependencies successfully precompiled in 365 seconds. 37 already precompiled. Precompiling ADTypesEnzymeCoreExt... 771.2 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1 dependency successfully precompiled in 1 seconds. 2 already precompiled. Precompiling OptimisersEnzymeCoreExt... 858.3 ms ✓ Optimisers → OptimisersEnzymeCoreExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling AdaptExt... 773.3 ms ✓ EnzymeCore → AdaptExt 1 dependency successfully precompiled in 1 seconds. 4 already precompiled. Precompiling QuadGKEnzymeExt... 22880.6 ms ✓ QuadGK → QuadGKEnzymeExt 1 dependency successfully precompiled in 23 seconds. 49 already precompiled. Precompiling EnzymeExt... 23319.7 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 51725.4 ms ✓ Enzyme → EnzymeChainRulesCoreExt 22078.1 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 30376.4 ms ✓ LaplacianExpectationMaximization → EnzymeExt 4 dependencies successfully precompiled in 130 seconds. 130 already precompiled. Precompiling DifferentiationInterfaceEnzymeExt... 24067.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 1 dependency successfully precompiled in 25 seconds. 48 already precompiled. Precompiling OptimizationEnzymeExt... 44700.7 ms ✓ OptimizationBase → OptimizationEnzymeExt 1 dependency successfully precompiled in 46 seconds. 108 already precompiled. Precompiling DistributionsTestExt... 4459.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 6 seconds. 63 already precompiled. Precompiling AccessorsTestExt... 1145.8 ms ✓ Accessors → AccessorsTestExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Test Summary: | Pass Total Time GaussianModel | 3 3 4.0s Test Summary: | Pass Total Time BiasedCoin | 3 3 2.0s Test Summary: | Pass Total Time HabituatingBiasedCoin | 3 3 0.5s Test Summary: | Pass Total Time MarkovChain | 1 1 4.1s Test Summary: | Pass Total Time HabituatingMarkovChain | 1 1 4.0s Test Summary: | Pass Total Time gradlogp & hesslogp | 14 14 3m27.1s Test Summary: | Pass Broken Total Time ForwardDiff & Enzyme | 1 1 2 3.4s Test Summary: | Pass Total Time NormalPrior | 1 1 1.3s Test Summary: | Pass Total Time copy_elements | 5 5 5.0s Test Summary: | Pass Total Time distribute_shared | 4 4 7.2s Test Summary: | Pass Total Time drop | 8 8 5.4s Test Summary: | Pass Total Time fix | 34 34 1m19.4s ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#22#23"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#24#25"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#40#41"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#34#35"{Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, Vector{Vector{Bool}}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 eval | current | lowest | highest _________________________________________________ 2 | -1867.16 | -1867.16 | -1867.16 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 3 | -462.114 | -1867.16 | -462.114 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 3351 | -394.145 | -1867.16 | -394.145 4890 | -394.145 | -1867.16 | -394.145 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 6829 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 7513 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 7771 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 7944 | -Inf | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8069 | -156549 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8179 | -234361 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8268 | -325950 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8348 | -427252 | -Inf | -394.145 Starting M-Step. ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8426 | -535634 | -Inf | -394.145 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 8528 | -204.883 | -Inf | -204.883 Test Summary: | Pass Total Time maximize_logp | 3 3 4m07.5s Test Summary: | Pass Total Time populations | 5 5 10.6s Test Summary: | Pass Total Time PopGradLogP | 11 11 25.1s Test Summary: | Pass Total Time BIC_int | 1 1 2.1s Test Summary: | Pass Total Time population recovery | 5 5 41.5s Test Summary: | Pass Total Time single sample recovery | 5 5 24.1s Precompiling JET... 14219.8 ms ✓ JuliaInterpreter 23269.1 ms ✓ LoweredCodeUtils 10242.5 ms ✓ JET 3 dependencies successfully precompiled in 48 seconds. 30 already precompiled. [toplevel-info] virtualized the context of Main (took 0.079 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/LaplacianExpectationMaximization.jl [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/api.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/api.jl (took 0.204 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/simulate.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/simulate.jl (took 1.986 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/populations.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/populations.jl (took 0.077 sec) [toplevel-info] entered into 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analyzing from top-level definitions (242/250) [toplevel-info] analyzing from top-level definitions (243/250) [toplevel-info] analyzing from top-level definitions (244/250) [toplevel-info] analyzing from top-level definitions (245/250) [toplevel-info] analyzing from top-level definitions (246/250) [toplevel-info] analyzing from top-level definitions (247/250) [toplevel-info] analyzing from top-level definitions (248/250) [toplevel-info] analyzing from top-level definitions (249/250) [toplevel-info] analyzing from top-level definitions (250/250) [toplevel-info] analyzed 250 top-level definitions (took 22.383 sec) Test Summary: | Pass Total Time static analysis with JET.jl | 1 1 3m38.7s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 211 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm15ScalarEvolution21getOrCreateAddRecExprENS_8ArrayRefIPKNS_4SCEVEEEPKNS_4LoopENS2_11NoWrapFlagsE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution10getAddExprERNS_15SmallVectorImplIPKNS_4SCEVEEENS2_11NoWrapFlagsEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_111LSRInstance26GenerateReassociationsImplERNS_6LSRUseEjRKNS_7FormulaEjmb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_111LSRInstance26GenerateReassociationsImplERNS_6LSRUseEjRKNS_7FormulaEjmb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_111LSRInstance26GenerateReassociationsImplERNS_6LSRUseEjRKNS_7FormulaEjmb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_111LSRInstance24GenerateAllReuseFormulaeEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_111LSRInstanceC1EPN4llvm4LoopERNS1_7IVUsersERNS1_15ScalarEvolutionERNS1_13DominatorTreeERNS1_8LoopInfoERKNS1_19TargetTransformInfoERNS1_15AssumptionCacheERNS1_17TargetLibraryInfoEPNS1_16MemorySSAUpdaterE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL18ReduceLoopStrengthPN4llvm4LoopERNS_7IVUsersERNS_15ScalarEvolutionERNS_13DominatorTreeERNS_8LoopInfoERKNS_19TargetTransformInfoERNS_15AssumptionCacheERNS_17TargetLibraryInfoEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_118LoopStrengthReduce9runOnLoopEPN4llvm4LoopERNS1_13LPPassManagerE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13LPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1388 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 jl_add_to_ee at /source/src/jitlayers.cpp:2285 jl_add_to_ee at /source/src/jitlayers.cpp:2285 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7a5b77e94082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a5b79179249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x74530e72d432) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2136 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2076 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1927 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1785 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1894 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x74530e724d4d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1833 unknown function (ip: 0x74530e719626) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2059 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2003 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x74530e71932d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x74530e718d1d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x74530e715116) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46944.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74530f9c2249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000745302400010 Total snapshots: 51. Utilization: 0% ╎51 @Base/client.jl:531; _start() ╎ 51 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 51 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 51 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path:… ╎ 51 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod:… ╎ 51 @Base/boot.jl:430; eval ╎ ╎ 51 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 51 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 51 @Pkg/src/API.jl:147; test ╎ ╎ 51 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 51 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 51 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 51 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 51 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 51 …src/Operations.jl:2003; test ╎ ╎ ╎ 51 …src/Operations.jl:2059; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 51 …rc/Operations.jl:1833; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 51 …rc/Operations.jl:1841; #sandbox#115 ╎ ╎ ╎ ╎ 51 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 51 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 51 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 51 …/Operations.jl:1894; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 51 …/Operations.jl:1785; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 51 …Operations.jl:1927; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 51 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 51 …Operations.jl:2076; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 51 …perations.jl:2136; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 51 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 51 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 51 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 51 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 51 …ase/task.jl:1021; wait() 50╎ ╎ ╎ ╎ ╎ ╎ ╎ 51 …ase/task.jl:1012; poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [211] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/test/runtests.jl:25 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:577 #1190 at ./Base.jl:617 jfptr_YY.1190_76218.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 19876636 (Pool: 19874937; Big: 1699); GC: 25 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#761 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67193.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jlcapi_uv_writecb_task_67656.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48411.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x74530e739a36) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:462 jfptr__atexit_69718.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2726.93s: test duration exceeded the time limit