Package evaluation of Knockoffs on Julia 1.11.4 (8561cc3d68*) started at 2025-04-08T21:16:50.636 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.38s ################################################################################ # Installation # Installing Knockoffs... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [878bf26d] + Knockoffs v2.0.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 ⌅ [67c07d97] + Automa v0.8.4 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] + BlockDiagonals v0.1.42 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [587fd27a] + CovarianceEstimation v0.2.13 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.50 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [26cc04aa] + FiniteDifferences v0.12.32 [f6369f11] + ForwardDiff v1.0.1 [38e38edf] + GLM v1.9.0 ⌃ [8d5ece8b] + GLMNet v0.7.0 [14197337] + GenericLinearAlgebra v0.3.15 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 ⌅ [b99e6be6] + Hypatia v0.7.4 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [4076af6c] + JuMP v1.25.0 [878bf26d] + Knockoffs v2.0.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.38.1 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [6fe1bfb0] + OffsetArrays v1.16.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [1d0040c9] + PolyesterWeave v0.2.2 [3a141323] + PolynomialRoots v1.0.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [78c6b45d] + glmnet_jll v5.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.1+4 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1302.76s ################################################################################ # Testing # Testing Knockoffs Status `/tmp/jl_USjS0Y/Project.toml` ⌅ [0a1fb500] BlockDiagonals v0.1.42 [336ed68f] CSV v0.10.15 [aaaa29a8] Clustering v0.15.8 [587fd27a] CovarianceEstimation v0.2.13 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.118 [fdbdab4c] ElasticArrays v1.2.12 [38e38edf] GLM v1.9.0 ⌃ [8d5ece8b] GLMNet v0.7.0 ⌅ [b99e6be6] Hypatia v0.7.4 [4076af6c] JuMP v1.25.0 [878bf26d] Knockoffs v2.0.2 [bdcacae8] LoopVectorization v0.12.172 [429524aa] Optim v1.12.0 [85a6dd25] PositiveFactorizations v0.2.4 [92933f4c] ProgressMeter v1.10.4 [189a3867] Reexport v1.2.2 [f2b01f46] Roots v2.2.7 [4e780e97] SnpArrays v0.3.22 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [c751599d] ToeplitzMatrices v0.8.5 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_USjS0Y/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 ⌅ [67c07d97] Automa v0.8.4 [28d598bf] BGZFStreams v0.3.2 [6e4b80f9] BenchmarkTools v1.6.0 [0e736298] Bessels v0.2.8 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] BlockDiagonals v0.1.42 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [587fd27a] CovarianceEstimation v0.2.13 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.8.3 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.50 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [fdbdab4c] ElasticArrays v1.2.12 [4e289a0a] EnumX v1.0.5 [7a1cc6ca] FFTW v1.8.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [38e38edf] GLM v1.9.0 ⌃ [8d5ece8b] GLMNet v0.7.0 [14197337] GenericLinearAlgebra v0.3.15 [c27321d9] Glob v1.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 ⌅ [b99e6be6] Hypatia v0.7.4 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [4076af6c] JuMP v1.25.0 [878bf26d] Knockoffs v2.0.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d3d80556] LineSearches v7.3.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.172 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.38.1 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 [6fe1bfb0] OffsetArrays v1.16.0 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [1d0040c9] PolyesterWeave v0.2.2 [3a141323] PolynomialRoots v1.0.0 [f27b6e38] Polynomials v4.0.19 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.4.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [9449cd9e] TSVD v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [c751599d] ToeplitzMatrices v0.8.5 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.6 [3d5dd08c] VectorizationBase v0.21.71 [ea10d353] WeakRefStrings v1.4.2 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [78c6b45d] glmnet_jll v5.0.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.1+4 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling ToeplitzMatrices... 40699.5 ms ✓ Polynomials 3639.9 ms ✓ Polynomials → PolynomialsFFTWExt 7080.4 ms ✓ DSP 4618.1 ms ✓ ToeplitzMatrices 4 dependencies successfully precompiled in 57 seconds. 60 already precompiled. Precompiling PolynomialsChainRulesCoreExt... 2779.3 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1 dependency successfully precompiled in 3 seconds. 24 already precompiled. Precompiling PolynomialsMutableArithmeticsExt... 3255.0 ms ✓ Polynomials → PolynomialsMutableArithmeticsExt 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling OffsetArraysExt... 3681.5 ms ✓ DSP → OffsetArraysExt 1 dependency successfully precompiled in 4 seconds. 61 already precompiled. Precompiling ToeplitzMatricesStatsBaseExt... 4461.0 ms ✓ ToeplitzMatrices → ToeplitzMatricesStatsBaseExt 1 dependency successfully precompiled in 6 seconds. 73 already precompiled. 165.106527 seconds (75.96 M allocations: 3.991 GiB, 1.36% gc time, 99.06% compilation time) Test Summary: | Pass Total Time fixed knockoffs | 10204 10204 2m45.7s 14.572580 seconds (322.58 k allocations: 184.605 MiB, 0.55% gc time) Test Summary: | Pass Total Time model X Guassian Knockoffs | 4 4 14.6s 9.006230 seconds (307.97 k allocations: 186.423 MiB, 9.96% gc time) Test Summary: | Pass Total Time model X 2nd order Knockoffs | 3 3 9.0s Test Summary: | Pass Total Time utility functions | 247456 247456 27.9s Test Summary: | Pass Total Time MK_statistics | 16 16 4.0s Test Summary: | Pass Total Time Markov chain knockoffs have the right correlation structure | 55 55 30.2s 53.808217 seconds (647.73 k allocations: 589.609 MiB, 0.93% gc time) 0.115761 seconds (103 allocations: 15.384 MiB) 0.144824 seconds (109 allocations: 15.389 MiB) 4.871615 seconds (403.34 k allocations: 69.823 MiB, 49.99% compilation time) 4.091541 seconds (1.24 k allocations: 49.591 MiB, 17.99% gc time) 3.252003 seconds (1.24 k allocations: 49.591 MiB, 0.94% gc time) Test Summary: | Pass Total Time SDP vs MVR vs ME knockoffs | 2 2 1m06.3s 65.852027 seconds (659.01 k allocations: 587.174 MiB, 0.37% gc time) 0.908773 seconds (72 allocations: 10.467 MiB) Test Summary: | Pass Total Time SDP vs SDP fast | 1 1 1m06.8s 0.580230 seconds (72 allocations: 10.467 MiB) 1.483631 seconds (72 allocations: 10.467 MiB) Test Summary: | Pass Total Time keyword arguments | 1 1 2.1s 0.584519 seconds (103 allocations: 42.423 MiB, 7.15% gc time) 5.458174 seconds (1.25 k allocations: 125.277 MiB, 0.45% gc time) 5.111081 seconds (1.57 k allocations: 134.459 MiB, 0.20% gc time) Test Summary: | Pass Total Time debiasing preserves sparsity pattern | 5 5 11.2s ┌ Warning: `Progress(n::Integer, dt::Real, desc::AbstractString = "Progress: ", barlen = nothing, color::Symbol = :green, output::IO = stderr; offset::Integer = 0)` is deprecated, use `Progress(n; dt = dt, desc = desc, barlen = barlen, color = color, output = output, offset = offset)` instead. │ caller = ip:0x0 └ @ Core :-1 Approximating covariance by blocks... 33%|████▋ | ETA: 0:00:03 Approximating covariance by blocks... 83%|███████████▋ | ETA: 0:00:01 Approximating covariance by blocks... 100%|██████████████| Time: 0:00:05 17.694485 seconds (4.32 M allocations: 726.243 MiB, 1.78% gc time, 68.95% compilation time) 0.440164 seconds (992 allocations: 43.010 MiB, 2.19% gc time) 1.059098 seconds (1.02 k allocations: 202.086 MiB, 1.71% gc time) Test Summary: | Pass Total Time approximate constructions | 4 4 19.3s norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 0.7044388571689835 norm(ko.betas[i] - b) = 0.879750303505637 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 0.7044387294061174 norm(ko.betas[i] - b) = 0.9607680773846126 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.7919251278577844 norm(ko.betas[i] - b) = 1.0183935821402585 norm(ko.betas[i] - b) = 1.019309911295841 Test Summary: | Pass Total Time fit lasso Gaussian | 3 3 1.9s norm(ls_ko.betas[i] - b) = 1.898369367937291 norm(ls_ko.betas[i] - b) = 1.898369367937291 norm(ls_ko.betas[i] - b) = 1.898369367937291 norm(ls_ko.betas[i] - b) = 0.4880027600182147 norm(ls_ko.betas[i] - b) = 0.6228446256183272 norm(lasso_ko.betas[i] - b) = 1.898369367937291 norm(lasso_ko.betas[i] - b) = 1.898369367937291 norm(lasso_ko.betas[i] - b) = 1.898369367937291 norm(lasso_ko.betas[i] - b) = 1.6046122369956328 norm(lasso_ko.betas[i] - b) = 1.5990540493936085 norm(nodebias_ko.betas[i] - b) = 1.898369367937291 norm(nodebias_ko.betas[i] - b) = 1.898369367937291 norm(nodebias_ko.betas[i] - b) = 1.662231193450143 norm(nodebias_ko.betas[i] - b) = 1.6604119549015366 norm(nodebias_ko.betas[i] - b) = 1.6604633394479436 Test Summary: | Pass Total Time fit lasso logistic | 3 3 1m02.0s Test Summary: | Pass Total Time predict via knockoff-filter | 15 15 1.8s 140.867889 seconds (65.87 M allocations: 3.300 GiB, 0.74% gc time, 99.99% compilation time) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (PCA): obj = 0.0076425694218480575, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.0034459041620199357, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (PCA): obj = 0.002468051757417651, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 5 (PCA): obj = 0.0017054405081494684, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 6 (PCA): obj = 0.0012815483847531087, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 7 (PCA): obj = 0.0009487836727680071, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 8 (PCA): obj = 0.000730738543804908, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 9 (PCA): obj = 0.0006182524210547019, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 10 (PCA): obj = 0.000558175587766423, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 11 (PCA): obj = 0.0005253955252115187, δ = 0.0002733251270502751, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 12 (PCA): obj = 0.0005011821332138296, δ = 0.00017258408984083783, t1 = 0.01, t2 = 0.0, t3 = 0.02 Iter 13 (PCA): obj = 0.0005003029756800681, δ = 0.00012494593920418898, t1 = 0.01, t2 = 0.0, t3 = 0.02 16.859316 seconds (1.99 M allocations: 110.492 MiB, 1.04% gc time, 98.66% compilation time) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (PCA): obj = 0.007642569421848044, δ = 0.1049513868593349, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.003445904162019915, δ = 0.012891029698779576, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (PCA): obj = 0.002468051757417631, δ = 0.004615087855127155, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 5 (PCA): obj = 0.0017054405081494545, δ = 0.00934076126679786, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 6 (PCA): obj = 0.0012815483847530853, δ = 0.0036136772135410087, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 7 (PCA): obj = 0.0009487836727679915, δ = 0.0020343293010157046, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 8 (PCA): obj = 0.0007307385438048969, δ = 0.0014838583134576626, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 9 (PCA): obj = 0.0006182524210546915, δ = 0.0006769799569998174, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 10 (PCA): obj = 0.0005581755877664172, δ = 0.0006571834545315721, t1 = 0.0, t2 = 0.0, t3 = 0.01 Iter 11 (CCD): obj = 2.084040498699191e-15, δ = 0.0012531657723307554, t1 = 0.01, t2 = 0.0, t3 = 0.01 Iter 12 (CCD): obj = 2.084040498699191e-15, δ = 0.0, t1 = 0.01, t2 = 0.01, t3 = 0.01 Iter 13 (PCA): obj = 0.00012393119554853323, δ = 9.45712295155215e-5, t1 = 0.01, t2 = 0.01, t3 = 0.01 Iter 14 (CCD): obj = 2.0637767177437896e-15, δ = 4.6788636386851934e-5, t1 = 0.01, t2 = 0.01, t3 = 0.01 0.044631 seconds (4.45 k allocations: 11.231 MiB) SDP initial obj = 2.600000000000002 Iter 1 (PCA): obj = 0.04235355947096328, δ = 0.9874010495584882, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 2 (CCD): obj = 2.0263912245508265e-15, δ = 0.026246930919087696, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = 0.00012393119554919874, δ = 9.4571229516383e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 4 (CCD): obj = 1.9964477628324397e-15, δ = 4.678863638751807e-5, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.022159 seconds (2.28 k allocations: 11.077 MiB) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = 2134.232587701349, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0 2.901040 seconds (378.57 k allocations: 29.196 MiB, 99.18% compilation time) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = 2134.232587701349, δ = 0.064365048700893, t1 = 0.0, t2 = 0.0 Iter 3 (CCD): obj = 2134.2325877012863, δ = 2.3275091878961352e-7, t1 = 0.0, t2 = 0.0,t3 = 0.0 0.067006 seconds (1.44 k allocations: 11.158 MiB, 63.12% gc time) MVR initial obj = 3627.758405239078 Iter 1 (PCA): obj = 2134.3338341797335, δ = 0.9825804476712029, t1 = 0.0, t2 = 0.0 Iter 2 (CCD): obj = 2134.3244105744884, δ = 0.0011116260339162362, t1 = 0.0, t2 = 0.0,t3 = 0.0 Iter 3 (PCA): obj = 2134.2327037668074, δ = 0.061319793151697825, t1 = 0.0, t2 = 0.0 Iter 4 (CCD): obj = 2134.232651949957, δ = 0.00012568491784442073, t1 = 0.0, t2 = 0.01,t3 = 0.0 0.024189 seconds (1.69 k allocations: 11.175 MiB) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0 2.181495 seconds (266.08 k allocations: 23.973 MiB, 99.25% compilation time) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (PCA): obj = -153.24879130720362, δ = 0.06018956607736612, t1 = 0.0, t2 = 0.0 Iter 3 (CCD): obj = -153.2487895675824, δ = 0.00010284693384665026, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.016937 seconds (1.41 k allocations: 11.031 MiB) Maxent initial obj = -257.9275190821772 Iter 1 (PCA): obj = -153.27202274240102, δ = 0.9946996466431096, t1 = 0.0, t2 = 0.0 Iter 2 (CCD): obj = -153.26564804055067, δ = 0.003144588665808597, t1 = 0.0, t2 = 0.0, t3 = 0.0 Iter 3 (PCA): obj = -153.24886074953, δ = 0.05119933659455436, t1 = 0.0, t2 = 0.0 Iter 4 (CCD): obj = -153.24880953840918, δ = 0.0006013379878981288, t1 = 0.0, t2 = 0.0, t3 = 0.0 0.043193 seconds (1.66 k allocations: 11.048 MiB, 43.58% gc time) Init obj = 3.30638908588147, with 10 unique blocks to optimze Iter 1: obj = 1.7013055430609987, δ = 0.6214119887160745 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 2: obj = 1.6318826408084548, δ = 0.13882107406256028 Iter 3: obj = 1.6041803582625438, δ = 0.12356624820618467 Iter 4: obj = 1.5881819411973455, δ = 0.07005736768408549 Iter 5: obj = 1.5808389988904294, δ = 0.04314292814993516 Iter 6: obj = 1.5757258381231147, δ = 0.08304477982973907 Iter 7: obj = 1.5708566896982692, δ = 0.0739079821626819 Iter 8: obj = 1.5668992364207368, δ = 0.05193615133523177 Iter 9: obj = 1.5640292756824072, δ = 0.031961563204566557 Iter 10: obj = 1.5612806207433167, δ = 0.055252417035458135 Iter 11: obj = 1.558867322691858, δ = 0.029816097901507688 Iter 12: obj = 1.556704060752225, δ = 0.059162975796437756 Iter 13: obj = 1.5548809815780533, δ = 0.04653551606595252 Iter 14: obj = 1.5535584640516436, δ = 0.04896068709469811 Iter 15: obj = 1.5523105271203674, δ = 0.06973962565253461 Iter 16: obj = 1.551390613139207, δ = 0.05946042309261995 Iter 17: obj = 1.5505230234172003, δ = 0.058292164830576976 Iter 18: obj = 1.5498623010911599, δ = 0.1308014257061174 Iter 19: obj = 1.54916481021187, δ = 0.08314056795410385 Iter 20: obj = 1.5486537474096802, δ = 0.05445352814646476 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 21: obj = 1.548230128921454, δ = 0.07536304970449187 Iter 22: obj = 1.5477212191516585, δ = 0.08337498117267911 Iter 23: obj = 1.5473671617055436, δ = 0.0708273107126407 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 24: obj = 1.5470763294067709, δ = 0.034096057588146045 Iter 25: obj = 1.5468242336987177, δ = 0.04890038863846502 Iter 26: obj = 1.5466116603348943, δ = 0.055471872181843185 Iter 27: obj = 1.5464589775682365, δ = 0.03791423745050934 Iter 28: obj = 1.5462739656891884, δ = 0.04493380606633209 Iter 29: obj = 1.5461084977817212, δ = 0.07877141794626583 Iter 30: obj = 1.545967897702873, δ = 0.041225754601842524 Iter 31: obj = 1.5458410971503873, δ = 0.029207991555286195 Iter 32: obj = 1.5457325108672941, δ = 0.029361796519457473 Iter 33: obj = 1.5456347877241738, δ = 0.06035578936238983 Iter 34: obj = 1.5455466407292973, δ = 0.05513795857756615 Iter 35: obj = 1.5454680754057777, δ = 0.11489811209245815 Iter 36: obj = 1.5453965108101322, δ = 0.11459103803255921 Iter 37: obj = 1.545331474510372, δ = 0.10075253092523107 Iter 38: obj = 1.5452709852573596, δ = 0.10981212041155064 Iter 39: obj = 1.545218156714565, δ = 0.068918554656545 Iter 40: obj = 1.545169351950697, δ = 0.030007221471497647 Iter 41: obj = 1.5451252931996702, δ = 0.02972208289068956 Iter 42: obj = 1.5450841503546784, δ = 0.027606907707309114 Iter 43: obj = 1.545046183950504, δ = 0.04806650117146022 Iter 44: obj = 1.5450128826046323, δ = 0.05686612739065472 Iter 45: obj = 1.5449826183467361, δ = 0.07590084616115877 Iter 46: obj = 1.5449542546851056, δ = 0.07703906490156409 Iter 47: obj = 1.544929001983441, δ = 0.04541074176063242 Iter 48: obj = 1.5449056326571642, δ = 0.1388616783715047 Iter 49: obj = 1.5448844847697736, δ = 0.12871070028332893 Iter 50: obj = 1.5448650304810656, δ = 0.04925168572434524 Iter 51: obj = 1.5448470009749056, δ = 0.039091708106586964 Iter 52: obj = 1.544830544470731, δ = 0.006492570143016907 55.942981 seconds (22.40 M allocations: 1.192 GiB, 0.54% gc time, 86.16% compilation time) Init obj = 5022.238768295894, with 10 unique blocks to optimze Iter 1: obj = 2668.244076465289, δ = 0.5443841391141556 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 2: obj = 2668.050774256755, δ = 0.1857986710867161 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 3: obj = 2693.7654577301473, δ = 0.05937427018784969 Iter 4: obj = 2700.075956286876, δ = 0.019657329502260734 ┌ Warning: cannot step in centering direction └ @ Hypatia.Solvers ~/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:111 Iter 5: obj = 2704.3206062491586, δ = 0.011303066723086896 Iter 6: obj = 2707.4953749773304, δ = 0.00931677160841271 44.739720 seconds (12.06 M allocations: 1.066 GiB, 0.53% gc time, 48.34% compilation time) Init obj = -334.2099510515071, with 10 unique blocks to optimze Iter 1: obj = -240.89248750710573, δ = 0.19996036235655368 Iter 2: obj = -243.06420045227097, δ = 0.02057377857120135 Iter 3: obj = -243.0167527462874, δ = 0.0008804408111319773 24.087838 seconds (12.51 M allocations: 644.975 MiB, 1.15% gc time, 96.46% compilation time) 0.102257 seconds (33.70 k allocations: 13.246 MiB, 23.19% compilation time) 1.051535 seconds (96.16 k allocations: 47.397 MiB, 2.05% gc time, 2.07% compilation time) Test Summary: | Pass Total Time group knockoff optimization | 3558 3558 4m56.7s 4.195929 seconds (1.09 M allocations: 56.620 MiB, 1.04% gc time, 99.59% compilation time) Test Summary: | Pass Total Time block descent for a single block | 2 2 16.6s Test Summary: | Pass Total Time group knockoff utilities | 7 7 6.7s Test Summary: | Pass Total Time representative group knockoffs | 15 15 1m33.2s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 235 running 1 of 1 signal (10): User defined signal 1 == at ./promotion.jl:639 [inlined] iterate at ./range.jl:908 [inlined] generic_trimatdiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:1400 _ldiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:966 [inlined] ldiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:973 unknown function (ip: 0x7cb386f45fc6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 sqrt_hess_prod! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Cones/possemideftri.jl:169 unknown function (ip: 0x7cb386f385a7) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 update_lhs_fact at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:238 update_lhs at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:196 unknown function (ip: 0x7cb386f325e9) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 macro expansion at ./timing.jl:421 [inlined] step at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:71 step_and_check at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:612 solve at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:373 optimize! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/MathOptInterface/wrapper.jl:228 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7cb387346412) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 unknown function (ip: 0x7cb387272eb9) unknown function (ip: 0x7cb387272e5f) optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Bridges/bridge_optimizer.jl:367 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7cb387272e12) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #optimize!#104 at /home/pkgeval/.julia/packages/JuMP/RGIK3/src/optimizer_interface.jl:595 optimize! at /home/pkgeval/.julia/packages/JuMP/RGIK3/src/optimizer_interface.jl:546 [inlined] #solve_SDP#15 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:82 solve_SDP at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:70 [inlined] #solve_s#12 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:38 solve_s at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:27 [inlined] #modelX_gaussian_knockoffs#3 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/modelX.jl:62 [inlined] modelX_gaussian_knockoffs at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/modelX.jl:53 [inlined] macro expansion at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/test/runtests.jl:787 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] top-level scope at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/test/runtests.jl:774 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7cb3a5100082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7cb3a645b249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#731 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7d3acdce6a22) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2136 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2076 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1927 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1785 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1894 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7d3acdcdf23d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1833 unknown function (ip: 0x7d3acdcd3b0a) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2059 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2003 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7d3acdcd380d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7d3acdcd31fd) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7d3acdccf5f6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:557 jfptr_include_46944.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d3aced26249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007d3ac1600010 Total snapshots: 12. Utilization: 0% ╎12 @Base/client.jl:531; _start() ╎ 12 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 12 @Base/Base.jl:557; include(mod::Module, _path::String) ╎ 12 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path:… ╎ 12 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod:… ╎ 12 @Base/boot.jl:430; eval ╎ ╎ 12 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 12 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 12 @Pkg/src/API.jl:147; test ╎ ╎ 12 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 12 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 12 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 12 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 12 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 12 …src/Operations.jl:2003; test ╎ ╎ ╎ 12 …src/Operations.jl:2059; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 12 …rc/Operations.jl:1833; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 12 …rc/Operations.jl:1841; #sandbox#115 ╎ ╎ ╎ ╎ 12 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 12 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 12 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 12 …/Operations.jl:1894; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 12 …/Operations.jl:1785; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 12 …Operations.jl:1927; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 12 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 12 …Operations.jl:2076; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 12 …perations.jl:2136; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 12 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 12 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 12 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 12 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 12 …ase/task.jl:1021; wait() 11╎ ╎ ╎ ╎ ╎ ╎ ╎ 12 …ase/task.jl:1012; poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [235] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/test/runtests.jl:773 == at ./promotion.jl:639 [inlined] iterate at ./range.jl:908 [inlined] generic_trimatdiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:1400 _ldiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:966 [inlined] ldiv! at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/triangular.jl:973 unknown function (ip: 0x7cb386f45fc6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 sqrt_hess_prod! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Cones/possemideftri.jl:169 unknown function (ip: 0x7cb386f385a7) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 update_lhs_fact at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:238 update_lhs at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/systemsolvers/qrchol.jl:196 unknown function (ip: 0x7cb386f325e9) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 macro expansion at ./timing.jl:421 [inlined] step at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/steppers/combined.jl:71 step_and_check at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:612 solve at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/Solvers/Solvers.jl:373 optimize! at /home/pkgeval/.julia/packages/Hypatia/Yxeja/src/MathOptInterface/wrapper.jl:228 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7cb387346412) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 unknown function (ip: 0x7cb387272eb9) unknown function (ip: 0x7cb387272e5f) optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Bridges/bridge_optimizer.jl:367 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/doGwJ/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7cb387272e12) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #optimize!#104 at /home/pkgeval/.julia/packages/JuMP/RGIK3/src/optimizer_interface.jl:595 optimize! at /home/pkgeval/.julia/packages/JuMP/RGIK3/src/optimizer_interface.jl:546 [inlined] #solve_SDP#15 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:82 solve_SDP at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:70 [inlined] #solve_s#12 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:38 solve_s at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/utilities.jl:27 [inlined] #modelX_gaussian_knockoffs#3 at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/modelX.jl:62 [inlined] modelX_gaussian_knockoffs at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/src/modelX.jl:53 [inlined] macro expansion at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/test/runtests.jl:787 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] top-level scope at /home/pkgeval/.julia/packages/Knockoffs/YJCQB/test/runtests.jl:774 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 poptask at ./task.jl:1012 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 wait at ./task.jl:1021 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x7cb3a5100082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 #wait#731 at ./condition.jl:130 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 profile_printing_listener at ./Base.jl:577 _start at ./client.jl:531 #1190 at ./Base.jl:617 jfptr__start_73645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7cb3a645b249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) Allocations: 334620527 (Pool: 334588576; Big: 31951); GC: 211 jfptr_YY.1190_76218.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 19796556 (Pool: 19795889; Big: 667); GC: 24 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#761 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67193.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jlcapi_uv_writecb_task_67656.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48411.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x7d3acdcf3046) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:462 jfptr__atexit_69718.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2723.54s: test duration exceeded the time limit