Package evaluation of JudiLingMeasures on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T18:45:01.702 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.21s ################################################################################ # Installation # Installing JudiLingMeasures... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [c131b360] + JudiLingMeasures v0.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 ⌅ [15f4f7f2] + AutoHashEquals v0.2.0 [fbb218c0] + BSON v0.3.9 ⌅ [6e4b80f9] + BenchmarkTools v1.5.0 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [2e981812] + DataLoaders v0.1.3 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 ⌅ [ffbed154] + DocStringExtensions v0.8.6 [c5bfea45] + Embeddings v0.4.6 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [92fee26a] + GZip v0.6.2 ⌅ [91feb7a0] + GoogleDrive v0.1.3 [cd3eb016] + HTTP v1.10.15 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b43a184b] + JudiLing v0.12.0 [c131b360] + JudiLingMeasures v0.2.0 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] + LearnBase v0.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 ⌃ [9920b226] + MLDataPattern v0.5.4 [66a33bbf] + MLLabelUtils v0.5.7 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.4.0 [88034a9c] + StringDistances v0.11.3 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 ⌅ [b189fb0b] + ThreadPools v1.2.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 3.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 200.88s ################################################################################ # Testing # Testing JudiLingMeasures Status `/tmp/jl_8RnkYW/Project.toml` [8f4d0f93] Conda v1.10.2 [a93c6f00] DataFrames v1.7.0 [b4f34e82] Distances v0.10.12 [b43a184b] JudiLing v0.12.0 [c131b360] JudiLingMeasures v0.2.0 [438e738f] PyCall v1.96.4 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [37e2e46d] LinearAlgebra v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8RnkYW/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [15f4f7f2] AutoHashEquals v0.2.0 [fbb218c0] BSON v0.3.9 ⌅ [6e4b80f9] BenchmarkTools v1.5.0 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [2e981812] DataLoaders v0.1.3 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 ⌅ [ffbed154] DocStringExtensions v0.8.6 [c5bfea45] Embeddings v0.4.6 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [92fee26a] GZip v0.6.2 ⌅ [91feb7a0] GoogleDrive v0.1.3 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b43a184b] JudiLing v0.12.0 [c131b360] JudiLingMeasures v0.2.0 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] LearnBase v0.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 ⌃ [9920b226] MLDataPattern v0.5.4 [66a33bbf] MLLabelUtils v0.5.7 [1914dd2f] MacroTools v0.5.15 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [438e738f] PyCall v1.96.4 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.4.0 [88034a9c] StringDistances v0.11.3 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 ⌅ [b189fb0b] ThreadPools v1.2.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [3a884ed6] UnPack v1.0.2 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time l1_rowwise | 4 4 4.1s Test Summary: | Pass Total Time l2_rowwise | 4 4 4.5s Test Summary: | Pass Total Time correlation_rowwise | 5 5 22.0s Test Summary: | Pass Total Time sem_density_mean | 4 4 5.1s Test Summary: | Pass Total Time mean_rowwise | 4 4 1.6s Test Summary: | Pass Total Time euclidean_distance_rowwise | 4 4 6.6s Test Summary: | Pass Total Time get_nearest_neighbour_eucl | 2 2 0.6s Test Summary: | Pass Total Time max_rowwise | 4 4 3.6s Test Summary: | Pass Total Time count_rows | 2 2 0.7s Test Summary: | Pass Total Time get_avg_levenshtein | 4 4 0.9s Test Summary: | Pass Total Time entropy | 5 5 4.8s Test Summary: | Pass Total Time correlation_diagonal_rowwise | 4 4 1.3s Test Summary: | Pass Total Time cosine_similarity | 4 4 2.0s Test Summary: | Pass Total Time safe_sum | 3 3 0.2s Test Summary: | Pass Total Time safe_length | 3 3 0.0s Test Summary: | Pass Total Time safe_divide | 4 4 0.0s Test Summary: | Pass Total Time mse_rowwise | 4 4 0.3s Test Summary: | Pass Total Time normalise_vector | 4 4 0.3s Test Summary: | Pass Total Time normalise_matrix_rowwise | 4 4 3.6s Making fac C ========== Timestep 1 Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... Progress: 67%|███████████████████████████▍ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ========== Timestep 2 average 1.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... ========== Timestep 3 average 1.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... ========== Timestep 4 average 0.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.0 Returning a sparse matrix format Calculating Ythat... Sparsity: 0.0 Finding paths... Progress: 67%|███████████████████████████▍ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Evaluating paths... average 1.0 of paths to evaluate Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Making fac C ========== Timestep 1 Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... ========== Timestep 2 average 1.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... ========== Timestep 3 average 1.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.1111111111111111 Returning a dense matrix format Calculating Ythat... Sparsity: 0.3333333333333333 Finding paths... ========== Timestep 4 average 0.0 of paths currently Calculating Yt... Calculating Mt... Auto mode: Sparsity: 0.0 Returning a sparse matrix format Calculating Ythat... Sparsity: 0.0 Finding paths... Evaluating paths... average 1.0 of paths to evaluate ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Test Summary: | Pass Total Time Make measure preparations | 5 5 0.3s Test Summary: | Pass Total Time L1 Norm | 5 5 0.9s Test Summary: | Pass Total Time L2 Norm | 4 4 0.0s Test Summary: | Pass Total Time Density | 6 6 2.6s Test Summary: | Pass Total Time ALC | 5 5 0.7s Test Summary: | Pass Total Time EDNN | 5 5 2.1s Test Summary: | Pass Total Time NNC | 5 5 0.9s Test Summary: | Pass Total Time last_support | 2 2 1.4s Test Summary: | Pass Total Time path_counts | 4 4 23.5s Test Summary: | Pass Total Time path_sum | 3 3 1.3s Test Summary: | Pass Total Time within_path_entropies | 4 4 3.2s Test Summary: | Pass Total Time ALDC | 3 3 3.1s Test Summary: | Pass Total Time Mean word support | 2 2 0.4s Test Summary: | Pass Total Time TargetCorrelation | 12 12 0.1s Test Summary: | Pass Total Time Rank | 5 5 4.1s Test Summary: | Pass Total Time lwlr | 2 2 0.5s Test Summary: | Pass Total Time PathSumChat | 2 2 0.5s Test Summary: | Pass Total Time C-Precision | 5 5 16.1s Test Summary: | Pass Total Time Semantic Support For Form | 6 6 2.0s Test Summary: | Pass Total Time SCPP | 2 2 1.4s Test Summary: | Pass Total Time MeanWordSupportChat | 2 2 0.2s Test Summary: | Pass Total Time lwlrChat | 2 2 2.5s Test Summary: | Pass Total Time Path Entropies Chat | 2 2 2.4s Test Summary: | Pass Total Time Target Path Sum | 2 2 0.0s Test Summary: | Pass Total Time Path Entropies SCP | 2 2 2.4s Test Summary: | Pass Total Time Total Distance | 4 4 1.2s Test Summary: | Pass Total Time Uncertainty | 8 8 8.1s Test Summary: | Pass Total Time Functional Load | 8 8 1.1s Recognition not implemented Recognition not implemented Recognition not implemented Recognition not implemented Recognition not implemented ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Recognition not implemented ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Recognition not implemented ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Recognition not implemented ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Recognition not implemented ┌ Warning: eval_SC: The C or S matrix contains duplicate vectors (usually because of homophones/homographs). Supplying the dataset and target column is recommended for a realistic evaluation. See the documentation of this function for more information. └ @ JudiLing ~/.julia/packages/JudiLing/TmEZc/src/eval.jl:263 Recognition not implemented Test Summary: | Pass Total Time All measures | 31 31 3.3s Testing JudiLingMeasures tests passed Testing completed after 265.34s PkgEval succeeded after 486.46s