Package evaluation of Impute on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T15:48:09.428 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.12s ################################################################################ # Installation # Installing Impute... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [f7bf1975] + Impute v0.6.12 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [fbb218c0] + BSON v0.3.9 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [cd3eb016] + HTTP v1.10.15 [f7bf1975] + Impute v0.6.12 [842dd82b] + InlineStrings v1.4.3 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [356022a1] + NamedDims v1.2.2 [b8a86587] + NearestNeighbors v0.4.21 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.5.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [458c3c95] + OpenSSL_jll v3.0.16+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.34s ################################################################################ # Testing # Testing Impute Status `/tmp/jl_WS9gU6/Project.toml` [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [fbb218c0] BSON v0.3.9 [336ed68f] CSV v0.10.15 [861a8166] Combinatorics v1.0.2 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [b4f34e82] Distances v0.10.12 [e30172f5] Documenter v1.10.1 [09f84164] HypothesisTests v0.11.5 [f7bf1975] Impute v0.6.12 [c8e1da08] IterTools v1.10.0 [e1d29d7a] Missings v1.2.0 [356022a1] NamedDims v1.2.2 [b8a86587] NearestNeighbors v0.4.21 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WS9gU6/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [fbb218c0] BSON v0.3.9 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.1 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [d7ba0133] Git v1.3.1 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [b5f81e59] IOCapture v0.2.5 [f7bf1975] Impute v0.6.12 [842dd82b] InlineStrings v1.4.3 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [356022a1] NamedDims v1.2.2 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [892a3eda] StringManipulation v0.4.1 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling InvertedIndicesExt... 4029.2 ms ✓ AxisKeys → InvertedIndicesExt 1 dependency successfully precompiled in 5 seconds. 37 already precompiled. Precompiling HypothesisTests... 4784.7 ms ✓ StatsBase 9955.4 ms ✓ Distributions 5750.9 ms ✓ HypothesisTests 3 dependencies successfully precompiled in 23 seconds. 58 already precompiled. Precompiling StatsBaseExt... 4380.0 ms ✓ AxisKeys → StatsBaseExt 1 dependency successfully precompiled in 5 seconds. 53 already precompiled. Precompiling DistributionsTestExt... 4386.7 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 6 seconds. 48 already precompiled. Precompiling IntervalSetsExt... 2033.8 ms ✓ Accessors → IntervalSetsExt 1 dependency successfully precompiled in 2 seconds. 15 already precompiled. Precompiling AxisKeysExt... 4613.0 ms ✓ Accessors → AxisKeysExt 1 dependency successfully precompiled in 5 seconds. 47 already precompiled. Precompiling TableOperations... 1142.1 ms ✓ TableOperations 1 dependency successfully precompiled in 1 seconds. 16 already precompiled. Precompiling Impute... 5862.1 ms ✓ DataDeps 11319.1 ms ✓ Impute 2 dependencies successfully precompiled in 18 seconds. 88 already precompiled. ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at validators.jl:55 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:55 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at Test.jl:676 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:676 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at Test.jl:676 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:676 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at validators.jl:64 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:64 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at validators.jl:68 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/validators.jl:68 Chaining and Piping: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/chain.jl:1 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/chain.jl:4 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/chain.jl:4 [13] include(fname::String) @ Main ./sysimg.jl:38 [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:56 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [17] include(fname::String) @ Main ./sysimg.jl:38 [18] top-level scope @ none:6 [19] eval @ ./boot.jl:430 [inlined] [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [21] _start() @ Base ./client.jl:531 data: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/data.jl:1 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] datasets() @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:15 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/data.jl:2 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/data.jl:2 [13] include(fname::String) @ Main ./sysimg.jl:38 [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:57 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [17] include(fname::String) @ Main ./sysimg.jl:38 [18] top-level scope @ none:6 [19] eval @ ./boot.jl:430 [inlined] [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [21] _start() @ Base ./client.jl:531 Matrix: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/deprecated.jl:58 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:59 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:59 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [14] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:35 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [16] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:3 [17] include(fname::String) @ Main ./sysimg.jl:38 [18] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:58 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [20] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [21] include(fname::String) @ Main ./sysimg.jl:38 [22] top-level scope @ none:6 [23] eval @ ./boot.jl:430 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [25] _start() @ Base ./client.jl:531 Chain: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/deprecated.jl:255 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:256 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:256 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [14] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/deprecated.jl:3 [15] include(fname::String) @ Main ./sysimg.jl:38 [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:58 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [18] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [19] include(fname::String) @ Main ./sysimg.jl:38 [20] top-level scope @ none:6 [21] eval @ ./boot.jl:430 [inlined] [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [23] _start() @ Base ./client.jl:531 ┌ Warning: interpolate! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: knn! did not mutate input data of type Matrix └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:188 ┌ Warning: knn! did not mutate input data of type AxisArray └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:378 [ Info: knn! did not mutate input data of type NamedDimsArray [ Info: knn! did not mutate input data of type KeyedArray Iris: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:11 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:15 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:15 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [14] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/imputors/knn.jl:2 [15] include(fname::String) @ Main ./sysimg.jl:38 [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:61 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [18] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [19] include(fname::String) @ Main ./sysimg.jl:38 [20] top-level scope @ none:6 [21] eval @ ./boot.jl:430 [inlined] [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [23] _start() @ Base ./client.jl:531 ┌ Warning: locf! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: nocb! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: replace! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: srs! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: substitute! did not mutate input data of row table └ @ Main ~/.julia/packages/Impute/ax0FI/test/testutils.jl:517 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:117 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:117 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:134 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:134 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:154 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:154 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:172 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:172 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:191 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:191 ┌ Warning: eweights will default to scale=true in the future. Use scale=false for previous behaviour. │ caller = macro expansion at substitute.jl:210 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:210 ┌ Warning: mean_and_std will default to corrected=true in the future. Use corrected=false for previous behaviour. │ caller = macro expansion at substitute.jl:216 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:216 ┌ Warning: mean_and_std will default to corrected=true in the future. Use corrected=false for previous behaviour. │ caller = #137 at substitute.jl:223 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/test/imputors/substitute.jl:223 ┌ Warning: Impute.Fill is deprecated in favour of Impute.Replace for constants and Impute.Substitute for calculating summary statistics over non-missing data. │ caller = #Fill#53 at deprecated.jl:46 [inlined] └ @ Core ~/.julia/packages/Impute/ax0FI/src/deprecated.jl:46 Data mismatch - too few variables: Error During Test at /home/pkgeval/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:96 Got exception outside of a @test DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.") Stacktrace: [1] ensure_download_permitted() @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:26 [2] download(datadep::DataDeps.DataDep, localdir::String; remotepath::String, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:70 [3] download(datadep::DataDeps.DataDep, localdir::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:63 [4] handle_missing @ ~/.julia/packages/DataDeps/Y2lje/src/resolution_automatic.jl:10 [inlined] [5] _resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:83 [inlined] [6] resolve(datadep::DataDeps.DataDep, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:29 [7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String) @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:54 [8] resolve @ ~/.julia/packages/DataDeps/Y2lje/src/resolution.jl:73 [inlined] [9] dataset(name::String) @ Impute ~/.julia/packages/Impute/ax0FI/src/data.jl:27 [10] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:97 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [12] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:97 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [14] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/imputors/svd.jl:2 [15] include(fname::String) @ Main ./sysimg.jl:38 [16] macro expansion @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:67 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [18] top-level scope @ ~/.julia/packages/Impute/ax0FI/test/runtests.jl:52 [19] include(fname::String) @ Main ./sysimg.jl:38 [20] top-level scope @ none:6 [21] eval @ ./boot.jl:430 [inlined] [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [23] _start() @ Base ./client.jl:531 Test Summary: | Pass Error Broken Total Time Impute | 662 6 9 677 6m26.0s Validators | 27 27 17.8s DeclareMissings | 21 21 14.2s Chaining and Piping | 1 1 14.1s data | 1 1 0.3s deprecated | 97 2 9 108 38.6s Default colwise | 4 4 2.8s Fill | 10 1 11 3.1s Value | 4 4 1.1s Mean | 6 6 1.7s Matrix | 1 1 0.3s Drop | 75 9 84 29.7s Chain | 1 1 0.3s utils | 8 8 2.8s Filter | 51 51 7.3s Interpolate | 93 93 51.6s KNN | 32 1 33 1m13.6s Default | 29 29 49.3s Iris | 1 1 0.3s Data match | 3 3 24.1s LOCF | 71 71 20.9s NOCB | 71 71 19.8s Replace | 56 56 20.0s SRS | 37 37 11.8s Substitute | 76 76 38.9s WeightedSubstitute | 12 12 13.4s SVD | 14 1 15 32.7s Default | 12 12 28.1s Data match | 1 1 2.7s Data mismatch - too few variables | 1 1 0.3s Data mismatch - poor low rank approximations | 1 1 1.6s Utilities | 4 4 1.7s ERROR: LoadError: Some tests did not pass: 662 passed, 0 failed, 6 errored, 9 broken. in expression starting at /home/pkgeval/.julia/packages/Impute/ax0FI/test/runtests.jl:51 Testing failed after 482.71s ERROR: LoadError: Package Impute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 549.99s: package tests unexpectedly errored