Package evaluation of ImarisWriter on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T09:47:04.624 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.31s ################################################################################ # Installation # Installing ImarisWriter... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [7685c673] + ImarisWriter v0.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [7685c673] + ImarisWriter v0.2.0 [692b3bcd] + JLLWrappers v1.7.0 [21216c6a] + Preferences v1.4.3 ⌅ [0234f1f7] + HDF5_jll v1.12.2+2 [9166e923] + ImarisWriter_jll v0.0.1+0 [5ced341a] + Lz4_jll v1.10.1+0 ⌅ [458c3c95] + OpenSSL_jll v1.1.23+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: ImarisWriter Failed to precompile ImarisWriter [7685c673-c356-4b9b-8b22-c9f5550fdd46] to "/home/pkgeval/.julia/compiled/v1.11/ImarisWriter/jl_Tm05n4". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/bedcfe9ab563ee1de22055bd416daedff9aee4e9/lib/libbpImarisWriter96.so" libhdf5-00e8fae8.so.200.0.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:120 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] macro expansion @ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined] [4] __init__() @ ImarisWriter_jll ~/.julia/packages/ImarisWriter_jll/lXEgz/src/wrappers/x86_64-linux-gnu-cxx11.jl:11 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include @ ./Base.jl:557 [inlined] [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [23] top-level scope @ stdin:6 during initialization of module ImarisWriter_jll in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/src/ImarisWriter.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 22.6s ################################################################################ # Testing # Testing ImarisWriter Status `/tmp/jl_K1JIpp/Project.toml` [7685c673] ImarisWriter v0.2.0 [9166e923] ImarisWriter_jll v0.0.1+0 [8f399da3] Libdl v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_K1JIpp/Manifest.toml` [7685c673] ImarisWriter v0.2.0 [692b3bcd] JLLWrappers v1.7.0 [21216c6a] Preferences v1.4.3 ⌅ [0234f1f7] HDF5_jll v1.12.2+2 [9166e923] ImarisWriter_jll v0.0.1+0 [5ced341a] Lz4_jll v1.10.1+0 ⌅ [458c3c95] OpenSSL_jll v1.1.23+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [83775a58] Zlib_jll v1.2.13+1 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling ImarisWriter... Info Given ImarisWriter was explicitly requested, output will be shown live  ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/bedcfe9ab563ee1de22055bd416daedff9aee4e9/lib/libbpImarisWriter96.so" libhdf5-00e8fae8.so.200.0.0: cannot open shared object file: No such file or directory Stacktrace:  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)  @ Base.Libc.Libdl ./libdl.jl:120  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] macro expansion  @ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined]  [4] __init__()  @ ImarisWriter_jll ~/.julia/packages/ImarisWriter_jll/lXEgz/src/wrappers/x86_64-linux-gnu-cxx11.jl:11  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1378  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1366  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)  @ Base ./loading.jl:1254  [8] _include_from_serialized (repeats 2 times)  @ ./loading.jl:1210 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2057  [10] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2527  [11] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [12] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [13] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [14] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [15] macro expansion  @ ./loading.jl:2314 [inlined]  [16] macro expansion  @ ./lock.jl:273 [inlined]  [17] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [18] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [19] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [20] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [21] include  @ ./Base.jl:557 [inlined]  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2881  [23] top-level scope  @ stdin:6 during initialization of module ImarisWriter_jll in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/src/ImarisWriter.jl:1 in expression starting at stdin:6 ✗ ImarisWriter 0 dependencies successfully precompiled in 5 seconds. 29 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: ImarisWriter Failed to precompile ImarisWriter [7685c673-c356-4b9b-8b22-c9f5550fdd46] to "/home/pkgeval/.julia/compiled/v1.11/ImarisWriter/jl_yc1SZZ". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/bedcfe9ab563ee1de22055bd416daedff9aee4e9/lib/libbpImarisWriter96.so" libhdf5-00e8fae8.so.200.0.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:120 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] macro expansion @ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined] [4] __init__() @ ImarisWriter_jll ~/.julia/packages/ImarisWriter_jll/lXEgz/src/wrappers/x86_64-linux-gnu-cxx11.jl:11 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include @ ./Base.jl:557 [inlined] [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [23] top-level scope @ stdin:6 during initialization of module ImarisWriter_jll in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/src/ImarisWriter.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/ImarisWriter/SvTXY/test/runtests.jl:1 Testing failed after 11.17s ERROR: LoadError: Package ImarisWriter errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 56.44s: package requires a missing binary dependency