Package evaluation of GraphicalModelLearning on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:18:18.263 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.68s ################################################################################ # Installation # Installing GraphicalModelLearning... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [73787735] + GraphicalModelLearning v0.2.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [f6369f11] + ForwardDiff v1.0.1 [73787735] + GraphicalModelLearning v0.2.2 [b6b21f68] + Ipopt v1.8.0 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [4076af6c] + JuMP v1.25.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [b8f27783] + MathOptInterface v1.38.1 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [856f2bd8] + StructTypes v1.11.0 [3bb67fe8] + TranscodingStreams v0.11.3 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 37.05s ################################################################################ # Testing # Testing GraphicalModelLearning Status `/tmp/jl_vFn774/Project.toml` [8bb1440f] DelimitedFiles v1.9.1 [73787735] GraphicalModelLearning v0.2.2 [b6b21f68] Ipopt v1.8.0 [4076af6c] JuMP v1.25.0 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vFn774/Manifest.toml` [6e4b80f9] BenchmarkTools v1.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [f6369f11] ForwardDiff v1.0.1 [73787735] GraphicalModelLearning v0.2.2 [b6b21f68] Ipopt v1.8.0 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [4076af6c] JuMP v1.25.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [b8f27783] MathOptInterface v1.38.1 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.4 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [856f2bd8] StructTypes v1.11.0 [3bb67fe8] TranscodingStreams v0.11.3 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.12.0+0 [9cc047cb] Ipopt_jll v300.1400.1700+0 [d00139f3] METIS_jll v5.1.3+0 [d7ed1dd3] MUMPS_seq_jll v500.700.301+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [319450e9] SPRAL_jll v2024.5.8+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: assuming spin alphabet [ Info: assuming spin alphabet [ Info: assuming spin alphabet [ Info: assuming spin alphabet [ Info: assuming spin alphabet [ Info: assuming spin alphabet ****************************************************************************** This program contains Ipopt, a library for large-scale nonlinear optimization. Ipopt is released as open source code under the Eclipse Public License (EPL). For more information visit https://github.com/coin-or/Ipopt ****************************************************************************** inverse ising formulations: Test Failed at /home/pkgeval/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:89 Expression: isapprox(learned_gm_rise, base_learned_gm) Evaluated: isapprox([0.000134991265635557 -0.1999451158084041 … 0.000304218458424003 -1.0260185942111196e-5; -0.19991326095579998 -0.4000322518247261 … 0.4997061208121928 2.1855663580938936e-5; … ; 0.0004279753730469003 0.4997400503764947 … -0.00024835956006181276 0.4998810190481609; 3.126878247659776e-5 0.00012725561505662783 … 0.4999614881763928 0.0005679522859531004], [0.00013499126538021072 -0.19994511580849514 … 0.00030421845842424847 -1.0260185942093786e-5; -0.1999092452330613 -0.4000319760622424 … 0.4997139551872083 8.323170528495587e-6; … ; 0.0004277663010713038 0.49974004964255686 … -0.0002484192254904004 0.49988101300065974; 1.4336096793346968e-5 8.605763612790237e-5 … 0.4999861511524643 0.0005641879682303313]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:89 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:68 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:17 inverse ising formulations: Test Failed at /home/pkgeval/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:95 Expression: isapprox(learned_gm_logrise, base_learned_gm) Evaluated: isapprox([0.00010579507928153635 -0.20018291929402898 … 0.00039027670299410754 -5.0321220215380804e-5; -0.20018593325029882 -0.4000459366039882 … 0.4997595353838072 -1.796231288868154e-5; … ; 0.00047675153525581523 0.49981082328766147 … -0.00023454763692453055 0.4999240808402192; -2.1086925766625026e-5 0.00010438121796026266 … 0.500014432698938 0.0005762978281236268], [0.00010579489422784827 -0.20018278686711904 … 0.0003897899740002753 -4.804754495655914e-5; -0.2001749877480932 -0.4000445806939153 … 0.4997673361461935 -5.642939888462136e-6; … ; 0.00047675447798192506 0.4998108194262111 … -0.00023454535699486592 0.49992407489276697; -1.1032938784735193e-5 8.54749019688042e-5 … 0.5000250448665091 0.0005728951425988235]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:95 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:68 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:17 inverse ising formulations: Test Failed at /home/pkgeval/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:101 Expression: isapprox(learned_gm_rple, base_learned_gm) Evaluated: isapprox([0.00016461574578477447 -0.1994364641608904 … 2.652157763053839e-5 6.61233367540915e-7; -0.19938368117480929 -0.39986719206461907 … 0.49951678686905193 3.6061078765974326e-5; … ; 0.00025868906122273954 0.4994635193578424 … -0.00038519301512384866 0.49978005093448263; 2.2101045881540013e-5 0.00013484598991482044 … 0.49972520731275794 0.0002320979365006385], [0.00016461523997746865 -0.1994349849710663 … 2.536126955801212e-5 2.1389596346923568e-7; -0.199349047638867 -0.39986099832375455 … 0.4995413800968234 1.7646289328783706e-5; … ; 0.00025869046080828054 0.4994635194203633 … -0.00038519274985979684 0.49978005100665773; 2.2101045245978822e-5 0.00013484601107139162 … 0.4997252073103073 0.00023209793737429644]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:679 [inlined] [2] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:101 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:68 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:17 inverse multi-body formulations: Error During Test at /home/pkgeval/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:130 Got exception outside of a @test AssertionError: JuMP.termination_status(model) == JuMP.MOI.LOCALLY_SOLVED Stacktrace: [1] learn(samples::Matrix{Float64}, formulation::multiRISE, method::NLP) @ GraphicalModelLearning ~/.julia/packages/GraphicalModelLearning/OClhI/src/GraphicalModelLearning.jl:127 [2] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:152 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [4] macro expansion @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:132 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [6] top-level scope @ ~/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:17 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] top-level scope @ none:6 [9] eval @ ./boot.jl:430 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [11] _start() @ Base ./client.jl:531 [ Info: assuming spin alphabet Test Summary: | Pass Fail Error Total Time GraphicalModelLearning | 110 3 1 114 1m57.6s factor graphs | 30 30 0.4s gibbs sampler | 3 3 6.1s gibbs sampler, 2nd order | 3 3 0.2s gibbs sampler with replicates | 9 9 1.1s inverse ising formulations | 9 3 12 1m33.1s RISE | 3 3 1m19.4s logRISE | 3 3 1.0s RPLE | 3 3 1.1s learned model accuracy | 18 18 4.2s inverse multi-body formulations | 37 1 38 12.4s docs example | 1 1 0.1s ERROR: LoadError: Some tests did not pass: 110 passed, 3 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GraphicalModelLearning/OClhI/test/runtests.jl:15 Testing failed after 158.84s ERROR: LoadError: Package GraphicalModelLearning errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 220.82s: package tests unexpectedly errored