Package evaluation of GeneDrive on Julia 1.11.4 (a71dd056e0*) started at 2025-04-09T02:24:28.916 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.74s ################################################################################ # Installation # Installing GeneDrive... Resolving package versions... Installed PlotlyJS ─ v0.18.15 Installed WebIO ──── v0.8.21 Updating `~/.julia/environments/v1.11/Project.toml` [d9acca20] + GeneDrive v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌅ [ec485272] + ArnoldiMethod v0.1.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [4c555306] + ArrayLayouts v1.11.1 [bf4720bc] + AssetRegistry v0.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [ad839575] + Blink v0.12.9 ⌅ [2a0fbf3d] + CPUSummary v0.1.30 [336ed68f] + CSV v0.10.15 [9961bab8] + Cbc v1.2.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 ⌃ [2b5f629d] + DiffEqBase v6.145.2 ⌅ [459566f4] + DiffEqCallbacks v2.36.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 ⌅ [f151be2c] + EnzymeCore v0.6.6 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [c87230d0] + FFMPEG v0.4.2 ⌅ [7034ab61] + FastBroadcast v0.2.8 [9aa1b823] + FastClosures v0.3.2 [29a986be] + FastLapackInterface v2.0.4 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [de31a74c] + FunctionalCollections v0.5.0 ⌅ [d9f16b24] + Functors v0.4.12 ⌅ [46192b85] + GPUArraysCore v0.1.5 [28b8d3ca] + GR v0.73.13 [d9acca20] + GeneDrive v0.1.0 [c145ed77] + GenericSchur v0.5.4 ⌃ [86223c79] + Graphs v1.9.0 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.15 [9fb69e20] + Hiccup v0.2.2 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.8.0 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.10 [692b3bcd] + JLLWrappers v1.7.0 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [4076af6c] + JuMP v1.25.0 [2ddba703] + Juniper v0.9.2 ⌅ [ef3ab10e] + KLU v0.4.1 [ba0b0d4f] + Krylov v0.9.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.7 [73f95e8e] + LatticeRules v0.0.1 [10f19ff3] + LayoutPointers v0.1.17 [50d2b5c4] + Lazy v0.15.1 ⌅ [5078a376] + LazyArrays v1.10.0 [093fc24a] + LightGraphs v1.3.5 [d3d80556] + LineSearches v7.3.0 ⌅ [7ed4a6bd] + LinearSolve v2.22.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.38.1 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [ffc61752] + Mustache v1.0.20 [d8a4904e] + MutableArithmetics v1.6.4 [a975b10e] + Mux v1.0.2 ⌃ [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 ⌅ [8913a72c] + NonlinearSolve v3.1.0 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.16.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 ⌃ [1dea7af3] + OrdinaryDiffEq v6.66.0 [90014a1f] + PDMats v0.11.33 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [a03496cd] + PlotlyBase v0.8.20 [f0f68f2c] + PlotlyJS v0.18.15 [f2990250] + PlotlyKaleido v2.3.0 [91a5bcdd] + Plots v1.40.11 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 ⌃ [d236fae5] + PreallocationTools v0.4.24 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.3 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [f2c3362d] + RecursiveFactorization v0.2.23 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌃ [0bca4576] + SciMLBase v2.10.0 [c0aeaf25] + SciMLOperators v0.3.13 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 ⌅ [727e6d20] + SimpleNonlinearSolve v1.4.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 ⌃ [47a9eef4] + SparseDiffTools v2.18.0 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 [860ef19b] + StableRNGs v1.0.2 ⌅ [aedffcd0] + Static v0.8.10 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [d5829a12] + TriangularSolve v0.2.1 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.5.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.22.0 [45397f5d] + UnitfulLatexify v1.6.4 [41fe7b60] + Unzip v0.2.0 [3d5dd08c] + VectorizationBase v0.21.71 [19fa3120] + VertexSafeGraphs v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.4+0 [38041ee0] + Cbc_jll v200.1000.800+0 [3830e938] + Cgl_jll v0.6000.600+0 ⌅ [06985876] + Clp_jll v100.1700.700+1 ⌅ [be027038] + CoinUtils_jll v200.1100.600+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.6.5+0 ⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.0+2 [d2c73de3] + GR_jll v0.73.13+0 [78b55507] + Gettext_jll v0.21.0+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [d4300ac3] + Libgcrypt_jll v1.11.1+0 [7e76a0d4] + Libglvnd_jll v1.7.0+0 [7add5ba3] + Libgpg_error_jll v1.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.0.1+1 [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [e7412a2a] + Ogg_jll v1.3.5+1 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 ⌅ [7da25872] + Osi_jll v0.10800.700+0 [36c8627f] + Pango_jll v1.56.1+0 [30392449] + Pixman_jll v0.44.2+0 ⌅ [c0090381] + Qt6Base_jll v6.7.1+1 ⌅ [629bc702] + Qt6Declarative_jll v6.7.1+2 ⌅ [ce943373] + Qt6ShaderTools_jll v6.7.1+1 ⌃ [e99dba38] + Qt6Wayland_jll v6.7.1+1 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 ⌃ [a2964d1f] + Wayland_jll v1.21.0+2 [2381bf8a] + Wayland_protocols_jll v1.36.0+0 [02c8fc9c] + XML2_jll v2.13.6+1 [aed1982a] + XSLT_jll v1.1.43+0 [ffd25f8a] + XZ_jll v5.8.1+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.4+0 [4f6342f7] + Xorg_libX11_jll v1.8.6+3 [0c0b7dd1] + Xorg_libXau_jll v1.0.12+0 [935fb764] + Xorg_libXcursor_jll v1.2.3+0 [a3789734] + Xorg_libXdmcp_jll v1.1.5+0 [1082639a] + Xorg_libXext_jll v1.3.6+3 [d091e8ba] + Xorg_libXfixes_jll v6.0.0+0 [a51aa0fd] + Xorg_libXi_jll v1.8.2+0 [d1454406] + Xorg_libXinerama_jll v1.1.5+0 [ec84b674] + Xorg_libXrandr_jll v1.5.4+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.11+1 [14d82f49] + Xorg_libpthread_stubs_jll v0.1.2+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.0+3 [cc61e674] + Xorg_libxkbfile_jll v1.1.2+1 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.4+0 [12413925] + Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] + Xorg_xcb_util_jll v0.4.0+1 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] + Xorg_xkbcomp_jll v1.4.6+1 [33bec58e] + Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [35ca27e7] + eudev_jll v3.2.9+0 [214eeab7] + fzf_jll v0.56.3+0 [1a1c6b14] + gperf_jll v3.1.1+1 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.11.0+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [36db933b] + libinput_jll v1.18.0+0 [b53b4c65] + libpng_jll v1.6.47+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [009596ad] + mtdev_jll v1.1.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [d8fb68d0] + xkbcommon_jll v1.4.1+2 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/e415b25fdec06e57590a7d5ac8e0cf662fa317e2/build.log` Installation completed after 27.62s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 675.6s ################################################################################ # Testing # Testing GeneDrive Status `/tmp/jl_KoIpCH/Project.toml` ⌅ [2a0fbf3d] CPUSummary v0.1.30 [336ed68f] CSV v0.10.15 [9961bab8] Cbc v1.2.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 ⌃ [2b5f629d] DiffEqBase v6.145.2 ⌅ [459566f4] DiffEqCallbacks v2.36.1 [31c24e10] Distributions v0.25.118 [d9acca20] GeneDrive v0.1.0 [b6b21f68] Ipopt v1.8.0 [682c06a0] JSON v0.21.4 [4076af6c] JuMP v1.25.0 [2ddba703] Juniper v0.9.2 [093fc24a] LightGraphs v1.3.5 [b8f27783] MathOptInterface v1.38.1 [2774e3e8] NLsolve v4.5.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.66.0 [f0f68f2c] PlotlyJS v0.18.15 [91a5bcdd] Plots v1.40.11 ⌅ [731186ca] RecursiveArrayTools v2.38.10 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KoIpCH/Manifest.toml` ⌅ [47edcb42] ADTypes v0.2.7 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] 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[29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling GeneDrive... 7247.1 ms ? SciMLBase 14741.9 ms ✓ SparseDiffTools 3653.1 ms ✓ LoopVectorization → SpecialFunctionsExt 22427.4 ms ? DiffEqBase 144238.2 ms ? LinearSolve 31083.8 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 12357.1 ms ? DiffEqBase → DiffEqBaseUnitfulExt 37790.5 ms ? DiffEqBase → DiffEqBaseDistributionsExt 12437.9 ms ? SimpleNonlinearSolve 12490.7 ms ? DiffEqCallbacks 12055.0 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 13406.2 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 12049.0 ms ? NonlinearSolve 12943.1 ms ? NonlinearSolve → NonlinearSolveNLsolveExt 12324.8 ms ? OrdinaryDiffEq Info Given GeneDrive was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 34214.4 ms ? GeneDrive 3 dependencies successfully precompiled in 419 seconds. 391 already precompiled. 13 dependencies failed but may be precompilable after restarting julia 13 dependencies had output during precompilation: ┌ NonlinearSolve → NonlinearSolveNLsolveExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ LinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ NonlinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqCallbacks │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase → DiffEqBaseDistributionsExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ GeneDrive │ [Output was shown above] └ ┌ DiffEqBase → DiffEqBaseUnitfulExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ LinearSolve → LinearSolveRecursiveArrayToolsExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ OrdinaryDiffEq │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SimpleNonlinearSolve │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling DiffEqBase... 6241.5 ms ? SciMLBase Info Given DiffEqBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 11054.6 ms ? DiffEqBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling SciMLBase... Info Given SciMLBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 6509.0 ms ? SciMLBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. WARNING: Method definition isconstant(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:254 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:8. Precompiling DiffEqCallbacks... 2179.2 ms ✓ FiniteDiff 5939.2 ms ? SciMLBase 1287.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 5257.3 ms ? DiffEqBase 2723.0 ms ✓ NLSolversBase 5461.1 ms ✓ LineSearches 3814.0 ms ✓ NLsolve Info Given DiffEqCallbacks was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-8f179eb2a75c is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 1923.9 ms ? DiffEqCallbacks 5 dependencies successfully precompiled in 32 seconds. 116 already precompiled. 2 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. 3 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ DiffEqBase │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-0026-8f1c824e681e is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2541 └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqCallbacks │ [Output was shown above] └ ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-0026-8f179eb2a75c is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2541 Precompiling JuMP... 81061.3 ms ✓ MathOptInterface 54616.7 ms ✓ JuMP 2 dependencies successfully precompiled in 140 seconds. 49 already precompiled. Precompiling Ipopt... 39781.9 ms ✓ Ipopt 1 dependency successfully precompiled in 42 seconds. 71 already precompiled. Precompiling Cbc... 1264.4 ms ✓ CoinUtils_jll 1369.9 ms ✓ Osi_jll 1453.4 ms ✓ Clp_jll 1296.1 ms ✓ Cgl_jll 1402.9 ms ✓ Cbc_jll 8690.3 ms ✓ Cbc 6 dependencies successfully precompiled in 18 seconds. 68 already precompiled. Precompiling Juniper... 11077.1 ms ✓ Juniper 1 dependency successfully precompiled in 13 seconds. 51 already precompiled. WARNING: Method definition solve_dynamic_model(GeneDrive.Network, Array{T, 1} where T, Any, Any) in module GeneDrive at /home/pkgeval/.julia/packages/GeneDrive/vNsku/src/helpers.jl:290 overwritten at /home/pkgeval/.julia/packages/GeneDrive/vNsku/src/helpers.jl:352. ┌ Warning: Replacing docs for `GeneDrive.solve_dynamic_model :: Tuple{GeneDrive.Network, Vector, Any, Any}` in module `GeneDrive` └ @ Base.Docs docs/Docs.jl:243 Temp Response Functions: Error During Test at /home/pkgeval/.julia/packages/GeneDrive/vNsku/test/tests_temperature_response.jl:1 Got exception outside of a @test MethodError: no method matching NoResponse() The type `NoResponse` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: NoResponse(!Matched::Float64) @ GeneDrive ~/.julia/packages/GeneDrive/vNsku/src/temperature_responses.jl:28 NoResponse(!Matched::Any) @ GeneDrive ~/.julia/packages/GeneDrive/vNsku/src/temperature_responses.jl:28 Stacktrace: [1] macro expansion @ ~/.julia/packages/GeneDrive/vNsku/test/tests_temperature_response.jl:4 [inlined] [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [3] top-level scope @ ~/.julia/packages/GeneDrive/vNsku/test/tests_temperature_response.jl:4 [4] include(fname::String) @ Main ./sysimg.jl:38 [5] macro expansion @ ~/.julia/packages/GeneDrive/vNsku/test/runtests.jl:5 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [7] top-level scope @ ~/.julia/packages/GeneDrive/vNsku/test/runtests.jl:5 [8] include(fname::String) @ Main ./sysimg.jl:38 [9] top-level scope @ none:6 [10] eval @ ./boot.jl:430 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [12] _start() @ Base ./client.jl:531 Test Summary: | Error Total Time GeneDrive | 1 1 7.5s Temp Response Functions | 1 1 7.3s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GeneDrive/vNsku/test/runtests.jl:4 Testing failed after 798.21s ERROR: LoadError: Package GeneDrive errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1548.14s: illegal method overwrites during precompilation