Package evaluation of FoldRNA on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T11:30:16.707 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.88s ################################################################################ # Installation # Installing FoldRNA... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [c54b6bf2] + FoldRNA v0.2.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.4 [c54b6bf2] + FoldRNA v0.2.3 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [c5292f4c] + ResumableFunctions v1.0.3 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [1986cc42] + Unitful v1.22.0 ⌅ [1b77fbbe] + GSL_jll v2.7.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.7+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [2f80f16e] + PCRE_jll v8.45.0+0 [b7a990de] + ViennaRNA_jll v2.6.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [781609d7] + GMP_jll v6.3.0+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [3a97d323] + MPFR_jll v4.2.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 2.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 58.71s ################################################################################ # Testing # Testing FoldRNA Status `/tmp/jl_BdRUby/Project.toml` [864edb3b] DataStructures v0.18.22 [c54b6bf2] FoldRNA v0.2.3 [2ab3a3ac] LogExpFunctions v0.3.29 [6fe1bfb0] OffsetArrays v1.16.0 [c5292f4c] ResumableFunctions v1.0.3 [90137ffa] StaticArrays v1.9.13 [1986cc42] Unitful v1.22.0 [b7a990de] ViennaRNA_jll v2.6.4+0 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_BdRUby/Manifest.toml` [34da2185] Compat v4.16.0 [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.4 [c54b6bf2] FoldRNA v0.2.3 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [c5292f4c] ResumableFunctions v1.0.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [1986cc42] Unitful v1.22.0 ⌅ [1b77fbbe] GSL_jll v2.7.2+0 [1d63c593] LLVMOpenMP_jll v18.1.7+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [2f80f16e] PCRE_jll v8.45.0+0 [b7a990de] ViennaRNA_jll v2.6.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [781609d7] GMP_jll v6.3.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [3a97d323] MPFR_jll v4.2.1+0 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... testing FoldRNA testing FixedsizePQ testing Alphabet testing Log semiring testing MinPlus semiring testing Pairtable testing allseq testing allstruct testing bpmodel testing loopmodel testing numstruct testing Fold testing score BpModel testing score LoopModel testing exhaustive testing design testing readparam Test Summary: | Pass Total Time FoldRNA | 2928 2928 2m09.5s FixedsizePQ | 17 17 2.8s Alphabet | 10 10 1.6s Log semiring | 131 131 1.5s MinPlus semiring | 126 126 1.2s Pairtable | 1056 1056 3.8s allseq | 77 77 1.5s allstruct | 176 176 6.0s bpmodel | 23 23 1.6s loopmodel | 16 16 56.9s numstruct | 891 891 0.8s Fold | 24 24 3.2s score BpModel | 2 2 0.0s score LoopModel | 251 251 3.0s exhaustive | 125 125 7.7s design | 1 1 0.1s readparam | 2 2 25.1s Testing FoldRNA tests passed Testing completed after 135.99s PkgEval succeeded after 279.59s