Package evaluation of FiniteMesh on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T10:44:24.351 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.22s ################################################################################ # Installation # Installing FiniteMesh... Resolving package versions... Installed Conda ────── v1.10.2 Installed PyCall ───── v1.96.4 Installed FiniteMesh ─ v0.3.6 Updating `~/.julia/environments/v1.11/Project.toml` [d3ebd857] + FiniteMesh v0.3.6 Updating `~/.julia/environments/v1.11/Manifest.toml` [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.4 [d3ebd857] + FiniteMesh v0.3.6 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.15 [69de0a69] + Parsers v2.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [438e738f] + PyCall v1.96.4 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building FiniteMesh → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3d2b3fd70f80b34d1a60233d09e73d324e9bafe2/build.log` Installation failed after 98.12s ERROR: LoadError: Error building `FiniteMesh`: /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic( Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - meshio The following packages will be downloaded: package | build ---------------------------|----------------- blosc-1.21.6 | he440d0b_1 47 KB conda-forge cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge cftime-1.6.4 | py312hc0a28a1_1 242 KB conda-forge h5py-3.13.0 |nompi_py312hedeef09_100 1.3 MB conda-forge hdf4-4.2.15 | h2a13503_7 739 KB conda-forge hdf5-1.14.3 |nompi_h2d575fe_109 3.7 MB conda-forge importlib-metadata-8.6.1 | pyha770c72_0 28 KB conda-forge importlib_metadata-8.6.1 | hd8ed1ab_0 9 KB conda-forge libaec-1.1.3 | h59595ed_0 35 KB conda-forge libjpeg-turbo-3.0.0 | hd590300_1 604 KB conda-forge libnetcdf-4.9.2 |nompi_h00e09a9_116 815 KB conda-forge libzip-1.11.2 | h6991a6a_0 106 KB conda-forge markdown-it-py-3.0.0 | pyhd8ed1ab_1 63 KB conda-forge mdurl-0.1.2 | pyhd8ed1ab_1 14 KB conda-forge meshio-5.3.5 | pyhd8ed1ab_0 374 KB conda-forge netcdf4-1.7.2 |nompi_py312h21d6d8e_101 1.1 MB conda-forge pygments-2.19.1 | pyhd8ed1ab_0 868 KB conda-forge rich-14.0.0 | pyh29332c3_0 196 KB conda-forge snappy-1.2.1 | h8bd8927_1 42 KB conda-forge typing_extensions-4.13.1 | pyh29332c3_0 51 KB conda-forge zipp-3.21.0 | pyhd8ed1ab_1 21 KB conda-forge zlib-1.3.1 | hb9d3cd8_2 90 KB conda-forge ------------------------------------------------------------ Total: 10.4 MB The following NEW packages will be INSTALLED: blosc conda-forge/linux-64::blosc-1.21.6-he440d0b_1 cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1 cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 cftime conda-forge/linux-64::cftime-1.6.4-py312hc0a28a1_1 h5py conda-forge/linux-64::h5py-3.13.0-nompi_py312hedeef09_100 hdf4 conda-forge/linux-64::hdf4-4.2.15-h2a13503_7 hdf5 conda-forge/linux-64::hdf5-1.14.3-nompi_h2d575fe_109 importlib-metadata conda-forge/noarch::importlib-metadata-8.6.1-pyha770c72_0 importlib_metadata conda-forge/noarch::importlib_metadata-8.6.1-hd8ed1ab_0 libaec conda-forge/linux-64::libaec-1.1.3-h59595ed_0 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.0.0-hd590300_1 libnetcdf conda-forge/linux-64::libnetcdf-4.9.2-nompi_h00e09a9_116 libzip conda-forge/linux-64::libzip-1.11.2-h6991a6a_0 markdown-it-py conda-forge/noarch::markdown-it-py-3.0.0-pyhd8ed1ab_1 mdurl conda-forge/noarch::mdurl-0.1.2-pyhd8ed1ab_1 meshio conda-forge/noarch::meshio-5.3.5-pyhd8ed1ab_0 netcdf4 conda-forge/linux-64::netcdf4-1.7.2-nompi_py312h21d6d8e_101 pygments conda-forge/noarch::pygments-2.19.1-pyhd8ed1ab_0 rich conda-forge/noarch::rich-14.0.0-pyh29332c3_0 snappy conda-forge/linux-64::snappy-1.2.1-h8bd8927_1 typing_extensions conda-forge/noarch::typing_extensions-4.13.1-pyh29332c3_0 zipp conda-forge/noarch::zipp-3.21.0-pyhd8ed1ab_1 zlib conda-forge/linux-64::zlib-1.3.1-hb9d3cd8_2 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.15.2 | py312ha707e6e_0 16.3 MB conda-forge ------------------------------------------------------------ Total: 16.3 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.15.2-py312ha707e6e_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment [ Info: Running `conda install -q -y meshio` in root environment [ Info: Running `conda install -q -y scipy` in root environment [ Info: installing python mates ERROR: LoadError: IOError: could not spawn `pip3 install meshio scipy --user`: no such file or directory (ENOENT) Stacktrace: [1] _spawn_primitive(file::String, cmd::Cmd, stdio::Memory{Union{RawFD, Base.SyncCloseFD, IO}}) @ Base ./process.jl:140 [2] _spawn @ ./process.jl:157 [inlined] [3] #883 @ ./process.jl:149 [inlined] [4] setup_stdios(f::Base.var"#883#884"{Cmd}, stdios::Vector{Union{RawFD, Base.FileRedirect, IO}}) @ Base ./process.jl:236 [5] _spawn @ ./process.jl:148 [inlined] [6] run(::Cmd; wait::Bool) @ Base ./process.jl:512 [7] run(::Cmd) @ Base ./process.jl:510 [8] top-level scope @ ~/.julia/packages/FiniteMesh/xmLB8/deps/build.jl:16 [9] include(fname::String) @ Main ./sysimg.jl:38 [10] top-level scope @ none:5 in expression starting at /home/pkgeval/.julia/packages/FiniteMesh/xmLB8/deps/build.jl:16 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1191 [3] withenv(::Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1931 [5] with_temp_env(fn::Pkg.Operations.var"#118#123"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1789 [6] (::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1898 [7] mktempdir(fn::Pkg.Operations.var"#116#121"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#67#74"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec, String}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:819 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:815 [9] mktempdir @ ./file.jl:815 [inlined] [10] #sandbox#115 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1845 [inlined] [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1172 [12] build_versions @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1090 [inlined] [13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1468 [14] add @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1414 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:312 [16] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [17] add(pkgs::Vector{Pkg.Types.PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 [18] add(pkg::Pkg.Types.PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [19] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 176.76s: package could not be installed