Package evaluation of F1Method on Julia 1.11.4 (a71dd056e0*) started at 2025-04-08T14:19:57.469 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.55s ################################################################################ # Installation # Installing F1Method... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [d5605bae] + F1Method v0.5.1 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 ⌃ [4fba245c] + ArrayInterface v7.7.1 [d360d2e6] + ChainRulesCore v1.25.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [d5605bae] + F1Method v0.5.1 [1a297f60] + FillArrays v1.13.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [46192b85] + GPUArraysCore v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 ⌅ [0bca4576] + SciMLBase v1.98.1 [c0aeaf25] + SciMLOperators v0.3.13 [276daf66] + SpecialFunctions v2.5.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [781d530d] + TruncatedStacktraces v1.4.0 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 734.94s ################################################################################ # Testing # Testing F1Method Status `/tmp/jl_dCKAbN/Project.toml` ⌃ [ace601d6] AIBECS v0.13.2 [31c24e10] Distributions v0.25.118 [d5605bae] F1Method v0.5.1 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [0bca4576] SciMLBase v1.98.1 [1986cc42] Unitful v1.22.0 ⌃ [04f20302] WorldOceanAtlasTools v0.6.1 [37e2e46d] LinearAlgebra v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dCKAbN/Manifest.toml` ⌅ [47edcb42] ADTypes v0.2.7 ⌃ [ace601d6] AIBECS v0.13.2 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌃ [4fba245c] ArrayInterface v7.7.1 ⌃ [13072b0f] AxisAlgorithms v1.0.1 ⌅ [76274a88] Bijectors v0.10.8 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 ⌅ [179af706] CFTime v0.1.4 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.25.1 [9e997f8a] 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[189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 ⌅ [0bca4576] SciMLBase v1.98.1 [c0aeaf25] SciMLOperators v0.3.13 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 ⌅ [8e980c4a] Shapefile v0.8.1 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [cae243ae] StackViews v0.1.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.4.0 [88034a9c] StringDistances v0.11.3 [892a3eda] StringManipulation v0.4.1 ⌅ [2efcf032] SymbolicIndexingInterface v0.2.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [06e1c1a7] TiledIteration v0.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] 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Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling F1Method... 14075.5 ms ? SciMLBase Info Given F1Method was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 7222.0 ms ? F1Method WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling SciMLBase... Info Given SciMLBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 5527.9 ms ? SciMLBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. WARNING: Method definition isconstant(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:254 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:8. quasi-Rosenbrock derivative: Error During Test at /home/pkgeval/.julia/packages/F1Method/gUiS2/test/runtests.jl:6 Got exception outside of a @test LoadError: All methods for the model function `f` had too few arguments. For example, an ODEProblem `f` must define either `f(u,p,t)` or `f(du,u,p,t)`. This error can be thrown if you define an ODE model for example as `f(u,t)`. The parameters `p` are not optional in the definition of `f`! For more information on the required number of arguments for the function you were defining, consult the documentation for the `SciMLProblem` or `SciMLFunction` type that was being constructed. For example, here is the no parameter Lorenz equation. The two valid versions are out of place: ```julia function lorenz(u,p,t) du1 = 10.0*(u[2]-u[1]) du2 = u[1]*(28.0-u[3]) - u[2] du3 = u[1]*u[2] - 8/3*u[3] [du1,du2,du3] end u0 = [1.0;0.0;0.0] tspan = (0.0,100.0) prob = ODEProblem(lorenz,u0,tspan) ``` and in-place: ```julia function lorenz!(du,u,p,t) du[1] = 10.0*(u[2]-u[1]) du[2] = u[1]*(28.0-u[3]) - u[2] du[3] = u[1]*u[2] - 8/3*u[3] end u0 = [1.0;0.0;0.0] tspan = (0.0,100.0) prob = ODEProblem(lorenz!,u0,tspan) ``` Offending function: f Methods: # 1 method for generic function "statefun" from Main.SubModuleRosenBrock: [1] statefun(x, p) @ ~/.julia/packages/F1Method/gUiS2/test/rosenbrock.jl:59 Stacktrace: [1] isinplace(f::Function, inplace_param_number::Int64, fname::String, iip_preferred::Bool; has_two_dispatches::Bool, isoptimization::Bool) @ SciMLBase ~/.julia/packages/SciMLBase/szsYq/src/utils.jl:267 [2] isinplace @ ~/.julia/packages/SciMLBase/szsYq/src/utils.jl:240 [inlined] [3] isinplace(f::Function, inplace_param_number::Int64) @ SciMLBase ~/.julia/packages/SciMLBase/szsYq/src/utils.jl:240 [4] SciMLBase.ODEFunction(f::Function; kwargs::@Kwargs{jac::Main.SubModuleRosenBrock.var"#5#7"}) @ SciMLBase ~/.julia/packages/SciMLBase/szsYq/src/scimlfunctions.jl:2430 [5] top-level scope @ ~/.julia/packages/F1Method/gUiS2/test/rosenbrock.jl:63 [6] include(fname::String) @ Main ./sysimg.jl:38 [7] macro expansion @ ~/.julia/packages/F1Method/gUiS2/test/runtests.jl:7 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1704 [inlined] [9] top-level scope @ ~/.julia/packages/F1Method/gUiS2/test/runtests.jl:7 [10] include(fname::String) @ Main ./sysimg.jl:38 [11] top-level scope @ none:6 [12] eval @ ./boot.jl:430 [inlined] [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [14] _start() @ Base ./client.jl:531 in expression starting at /home/pkgeval/.julia/packages/F1Method/gUiS2/test/rosenbrock.jl:3 Test Summary: | Error Total Time quasi-Rosenbrock derivative | 1 1 1m09.8s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/F1Method/gUiS2/test/runtests.jl:6 Testing failed after 76.65s ERROR: LoadError: Package F1Method errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2124 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2007 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 860.04s: illegal method overwrites during precompilation